Wall clock time and date at job start Tue Mar 31 2020 15:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35237 * 126.06796 * 2 1 4 4 C 1.40405 * 107.86573 * 179.97438 * 3 2 1 5 5 N 1.40159 * 125.97113 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00398 * 359.97438 * 5 4 3 7 7 O 1.21292 * 119.99343 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00293 * 179.97438 * 6 5 4 9 9 H 1.08999 * 110.66766 * 301.78981 * 8 6 5 10 10 C 1.54706 * 110.74682 * 65.00371 * 8 6 5 11 11 C 1.51642 * 101.93056 * 143.60597 * 10 8 6 12 12 C 1.37739 * 132.18204 * 164.59943 * 11 10 8 13 13 C 1.38349 * 119.97746 * 180.40271 * 12 11 10 14 14 C 1.38278 * 119.77305 * 359.94096 * 13 12 11 15 15 C 1.37940 * 120.34809 * 359.88040 * 14 13 12 16 16 C 1.38889 * 107.03667 * 344.62125 * 11 10 8 17 17 O 1.36133 * 111.23386 * 358.92085 * 16 11 10 18 18 N 1.31220 * 108.05629 * 359.97438 * 4 3 2 19 19 N 1.34964 * 126.06704 * 179.68176 * 2 1 3 20 20 C 1.46497 * 125.98067 * 0.03694 * 19 2 1 21 21 C 1.50705 * 109.46928 * 89.99752 * 20 19 2 22 22 H 1.07999 * 119.99891 * 0.02562 * 21 20 19 23 23 C 1.37881 * 119.99719 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00054 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99593 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47486 * 60.00208 * 25 23 21 27 27 H 1.48502 * 109.47006 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47169 * 299.99905 * 25 23 21 29 29 H 1.09001 * 109.46953 * 90.02780 * 1 2 3 30 30 H 1.09000 * 109.47318 * 210.02378 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.03008 * 1 2 3 32 32 H 1.08003 * 126.06505 * 359.95231 * 3 2 1 33 33 H 0.97000 * 119.99746 * 179.97438 * 5 4 3 34 34 H 1.09001 * 110.93948 * 261.76681 * 10 8 6 35 35 H 1.09006 * 110.94406 * 25.44260 * 10 8 6 36 36 H 1.07999 * 120.01075 * 0.35064 * 12 11 10 37 37 H 1.08004 * 120.11206 * 179.97438 * 13 12 11 38 38 H 1.08006 * 119.83078 * 179.85848 * 14 13 12 39 39 H 1.08003 * 119.87856 * 179.97438 * 15 14 13 40 40 H 1.08997 * 109.47454 * 209.99968 * 20 19 2 41 41 H 1.09004 * 109.46663 * 330.00121 * 20 19 2 42 42 H 0.96999 * 119.99863 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6546 0.0006 5 7 4.7734 1.4750 0.0013 6 6 4.6367 2.8158 0.0009 7 8 3.5301 3.3124 0.0005 8 6 5.8586 3.6979 0.0023 9 1 6.4839 3.4876 0.8699 10 6 6.6623 3.5227 -1.3080 11 6 7.1591 4.9328 -1.5618 12 6 8.1399 5.4329 -2.3895 13 6 8.3943 6.7926 -2.4169 14 6 7.6604 7.6448 -1.6125 15 6 6.6751 7.1466 -0.7855 16 6 6.4108 5.7794 -0.7542 17 8 5.4850 5.0856 -0.0367 18 7 3.6337 -0.6576 0.0015 19 7 2.3016 -1.0909 0.0061 20 6 1.8501 -2.4846 0.0130 21 6 1.6960 -2.9697 -1.4054 22 1 1.9131 -2.3064 -2.2296 23 6 1.2777 -4.2605 -1.6509 24 7 1.0129 -5.0680 -0.6473 25 14 1.0874 -4.8620 -3.4091 26 1 2.3942 -4.7693 -4.1083 27 1 0.6284 -6.2743 -3.4020 28 1 0.0876 -4.0206 -4.1146 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 1.9719 2.1211 -0.0007 33 1 5.6584 1.0777 0.0021 34 1 7.4964 2.8358 -1.1645 35 1 6.0168 3.1852 -2.1189 36 1 8.7107 4.7638 -3.0163 37 1 9.1632 7.1870 -3.0648 38 1 7.8597 8.7061 -1.6315 39 1 6.1068 7.8190 -0.1601 40 1 2.5844 -3.1019 0.5304 41 1 0.8912 -2.5531 0.5267 42 1 0.7183 -5.9759 -0.8200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271164276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:38 Heat of formation + Delta-G solvation = 24.804482 kcal Electronic energy + Delta-G solvation = -26279.710021 eV Core-core repulsion = 22419.410898 eV Total energy + Delta-G solvation = -3860.299122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.65525 -42.14554 -40.43879 -38.29622 -36.44903 -35.38828 -33.94721 -33.02272 -32.67490 -31.02932 -30.69791 -28.58478 -27.92825 -26.04269 -24.80949 -23.41883 -22.81410 -22.48454 -21.37682 -20.85068 -18.83106 -18.75682 -18.25756 -17.91424 -17.62321 -17.21616 -16.86680 -16.39476 -16.26695 -15.93574 -15.60110 -15.09241 -14.82015 -14.49720 -14.39334 -14.32999 -14.07414 -13.98331 -13.84643 -13.73661 -13.53902 -13.18230 -13.06858 -12.86207 -12.67087 -12.64758 -12.28910 -12.19636 -12.15159 -11.76130 -11.60766 -11.42535 -10.98487 -10.73581 -9.85501 -9.65076 -9.21945 -9.17076 -8.33576 -6.50897 0.31025 0.40293 0.76885 1.02934 1.26702 1.38851 1.39574 1.48935 1.94608 2.07769 2.33200 2.44922 2.76927 2.96643 3.13239 3.28882 3.64625 3.82748 3.87643 3.94174 4.11638 4.22461 4.31169 4.39009 4.52335 4.55465 4.67559 4.68284 4.69094 4.73492 4.86722 4.92890 4.96641 5.07449 5.09850 5.19905 5.36758 5.43746 5.52654 5.55566 5.62482 5.79801 5.84246 6.11543 6.19622 6.21532 6.60026 6.83116 6.99749 7.19859 8.72500 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021775 B = 0.002313 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.598525 B =12100.876216 C =12796.485495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.089 3.911 3 C -0.302 4.302 4 C 0.273 3.727 5 N -0.611 5.611 6 C 0.525 3.475 7 O -0.533 6.533 8 C 0.078 3.922 9 H 0.154 0.846 10 C -0.096 4.096 11 C -0.182 4.182 12 C -0.073 4.073 13 C -0.146 4.146 14 C -0.085 4.085 15 C -0.150 4.150 16 C 0.071 3.929 17 O -0.304 6.304 18 N -0.349 5.349 19 N -0.340 5.340 20 C 0.275 3.725 21 C -0.554 4.554 22 H 0.050 0.950 23 C 0.023 3.977 24 N -0.917 5.917 25 Si 0.970 3.030 26 H -0.274 1.274 27 H -0.273 1.273 28 H -0.267 1.267 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.163 0.837 33 H 0.430 0.570 34 H 0.141 0.859 35 H 0.087 0.913 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.133 0.867 40 H 0.027 0.973 41 H 0.053 0.947 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.984 21.934 -1.381 26.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.333 4.333 4 C 0.019 3.981 5 N -0.262 5.262 6 C 0.311 3.689 7 O -0.407 6.407 8 C 0.019 3.981 9 H 0.171 0.829 10 C -0.133 4.133 11 C -0.183 4.183 12 C -0.091 4.091 13 C -0.164 4.164 14 C -0.102 4.102 15 C -0.168 4.168 16 C 0.027 3.973 17 O -0.218 6.218 18 N -0.180 5.180 19 N -0.122 5.122 20 C 0.156 3.844 21 C -0.592 4.592 22 H 0.068 0.932 23 C -0.178 4.178 24 N -0.555 5.555 25 Si 0.794 3.206 26 H -0.200 1.200 27 H -0.198 1.198 28 H -0.191 1.191 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.180 0.820 33 H 0.269 0.731 34 H 0.159 0.841 35 H 0.105 0.895 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.177 0.823 39 H 0.151 0.849 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.621 21.035 -1.192 25.645 hybrid contribution -0.416 -0.390 -0.559 0.799 sum 14.205 20.645 -1.751 25.121 Atomic orbital electron populations 1.20481 0.85337 1.04268 1.04000 1.21722 0.96682 0.86423 0.99278 1.21410 0.90201 0.99830 1.21825 1.19200 0.88443 0.89221 1.01226 1.42241 1.07446 1.04255 1.72283 1.20709 0.91186 0.81422 0.75588 1.90681 1.28106 1.74242 1.47635 1.23179 0.91818 0.79914 1.03225 0.82859 1.21835 1.00751 0.95863 0.94886 1.20878 1.01068 0.95022 1.01348 1.20684 0.95329 0.96436 0.96645 1.21481 1.01494 0.92634 1.00772 1.21274 0.93451 1.01563 0.93946 1.20577 1.01463 0.91097 1.03705 1.19963 0.90008 0.94249 0.93097 1.86895 1.45385 1.18756 1.70773 1.77186 1.00013 1.09590 1.31192 1.48818 1.01722 1.07556 1.54140 1.19279 0.95037 0.72242 0.97857 1.21393 1.47684 0.98362 0.91736 0.93219 1.25722 0.93943 0.95978 1.02155 1.69989 1.44914 1.07720 1.32895 0.85421 0.78756 0.77662 0.78752 1.19978 1.19771 1.19138 0.89767 0.91079 0.87685 0.82010 0.73100 0.84094 0.89487 0.83328 0.82532 0.82329 0.84931 0.95511 0.92947 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.80 10.11 71.24 0.72 -2.08 16 2 C 0.09 3.79 6.92 41.39 0.29 4.08 16 3 C -0.30 -12.48 9.52 22.11 0.21 -12.27 16 4 C 0.27 10.91 8.11 133.32 1.08 11.99 16 5 N -0.61 -17.59 5.44 -307.51 -1.67 -19.27 16 6 C 0.53 15.01 7.10 87.66 0.62 15.63 16 7 O -0.53 -20.05 13.70 15.15 0.21 -19.84 16 8 C 0.08 1.58 4.05 30.43 0.12 1.70 16 9 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 10 C -0.10 -1.52 6.63 30.73 0.20 -1.32 16 11 C -0.18 -3.25 6.27 -19.53 -0.12 -3.37 16 12 C -0.07 -0.97 10.03 22.18 0.22 -0.75 16 13 C -0.15 -1.63 10.07 22.31 0.22 -1.40 16 14 C -0.08 -1.05 10.02 22.21 0.22 -0.83 16 15 C -0.15 -2.68 10.06 22.45 0.23 -2.45 16 16 C 0.07 1.57 7.04 22.68 0.16 1.73 16 17 O -0.30 -8.06 10.39 -76.84 -0.80 -8.86 16 18 N -0.35 -16.06 12.59 -54.45 -0.69 -16.74 16 19 N -0.34 -16.33 3.59 -338.44 -1.22 -17.55 16 20 C 0.27 14.39 5.99 85.64 0.51 14.90 16 21 C -0.55 -30.76 9.39 25.60 0.24 -30.52 16 22 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 23 C 0.02 1.26 5.46 84.66 0.46 1.72 16 24 N -0.92 -51.41 13.29 21.45 0.28 -51.13 16 25 Si 0.97 42.70 29.54 68.60 2.03 44.72 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 29 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.07 2.43 7.06 -2.39 -0.02 2.42 16 31 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.16 6.61 5.92 -2.91 -0.02 6.59 16 33 H 0.43 8.95 8.82 -92.71 -0.82 8.13 16 34 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.60 7.92 -2.38 -0.02 1.58 16 36 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 37 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 38 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 39 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 2.72 7.03 -2.39 -0.02 2.71 16 42 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -75.28 362.43 3.79 -71.49 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.25 Total: 20.41 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.40 Total: -3.24 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.29 Total: -104.68 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.59 Total: -28.70 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -75.28 3.79 -71.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271164276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.298 kcal (2) G-P(sol) polarization free energy of solvation -75.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds