Wall clock time and date at job start Tue Mar 31 2020 16:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47467 * 2 1 4 4 N 1.31918 * 120.17586 * 262.39992 * 3 2 1 5 5 N 1.28282 * 122.33023 * 179.97438 * 4 3 2 6 6 C 1.31920 * 122.51830 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00800 * 179.97438 * 6 5 4 8 8 C 1.38489 * 119.97193 * 359.73722 * 6 5 4 9 9 C 1.39747 * 120.17429 * 82.36935 * 3 2 1 10 10 C 1.48093 * 121.14849 * 0.02562 * 9 3 2 11 11 O 1.21535 * 119.99838 * 3.13250 * 10 9 3 12 12 N 1.34778 * 120.00262 * 183.13281 * 10 9 3 13 13 C 1.39839 * 119.99956 * 176.40628 * 12 10 9 14 14 C 1.38979 * 120.03981 * 215.69920 * 13 12 10 15 15 C 1.38150 * 120.06851 * 179.97438 * 14 13 12 16 16 C 1.38174 * 120.13631 * 359.71566 * 15 14 13 17 17 C 1.38909 * 120.07768 * 0.56294 * 16 15 14 18 18 O 1.35753 * 120.03427 * 179.71859 * 17 16 15 19 19 C 1.34827 * 117.00159 * 353.41550 * 18 17 16 20 20 H 1.07999 * 119.99414 * 5.10143 * 19 18 17 21 21 C 1.38648 * 120.00179 * 185.10410 * 19 18 17 22 22 N 1.31557 * 119.99852 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00094 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47074 * 89.99969 * 23 21 19 25 25 H 1.48500 * 109.46931 * 209.99899 * 23 21 19 26 26 H 1.48495 * 109.47115 * 329.99920 * 23 21 19 27 27 C 1.38737 * 120.03544 * 35.68368 * 13 12 10 28 28 H 1.09004 * 109.46689 * 60.00288 * 1 2 3 29 29 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47521 * 300.00289 * 1 2 3 31 31 H 1.08995 * 109.47521 * 239.99711 * 2 1 3 32 32 H 1.09004 * 109.46689 * 119.99712 * 2 1 3 33 33 H 1.09000 * 109.46992 * 90.00346 * 7 6 5 34 34 H 1.09006 * 109.46943 * 209.99431 * 7 6 5 35 35 H 1.08997 * 109.47729 * 329.99757 * 7 6 5 36 36 H 1.08005 * 121.09188 * 180.26259 * 8 6 5 37 37 H 0.96994 * 120.00168 * 356.41055 * 12 10 9 38 38 H 1.08008 * 119.96739 * 359.97438 * 14 13 12 39 39 H 1.08003 * 119.93341 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.96180 * 180.27442 * 16 15 14 41 41 H 0.97008 * 119.99810 * 179.97438 * 22 21 19 42 42 H 1.08001 * 120.07248 * 0.03187 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3956 1.9956 -1.1304 5 7 2.8286 3.2022 -1.1783 6 6 2.9425 3.9579 -0.1030 7 6 3.4586 5.3686 -0.2245 8 6 2.5831 3.4560 1.1367 9 6 2.1153 2.1364 1.1974 10 6 1.7163 1.5238 2.4853 11 8 1.3622 0.3617 2.5215 12 7 1.7457 2.2548 3.6172 13 6 1.2978 1.6996 4.8199 14 6 0.6317 2.4926 5.7468 15 6 0.1886 1.9446 6.9350 16 6 0.4007 0.6058 7.2033 17 6 1.0708 -0.1908 6.2836 18 8 1.2838 -1.5047 6.5505 19 6 0.9429 -1.9428 7.7792 20 1 0.4460 -1.2784 8.4707 21 6 1.2303 -3.2460 8.1551 22 7 1.8352 -4.0553 7.3126 23 14 0.7586 -3.8527 9.8577 24 1 -0.6091 -4.4296 9.8163 25 1 1.7220 -4.8941 10.2965 26 1 0.7880 -2.7168 10.8137 27 6 1.5176 0.3565 5.0891 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.6228 6.0482 -0.3906 34 1 3.9759 5.6466 0.6939 35 1 4.1505 5.4314 -1.0644 36 1 2.6650 4.0602 2.0281 37 1 2.0774 3.1661 3.5975 38 1 0.4604 3.5383 5.5380 39 1 -0.3292 2.5627 7.6536 40 1 0.0491 0.1793 8.1311 41 1 2.0366 -4.9671 7.5757 42 1 2.0352 -0.2618 4.3707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273476343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:06 Heat of formation + Delta-G solvation = 25.580334 kcal Electronic energy + Delta-G solvation = -26760.669732 eV Core-core repulsion = 22900.404253 eV Total energy + Delta-G solvation = -3860.265479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71683 -40.12290 -38.70269 -36.77983 -35.35791 -34.39111 -33.81445 -32.31141 -31.78316 -29.60051 -28.64799 -28.17487 -25.67199 -25.32617 -24.57137 -22.59693 -22.09406 -21.41647 -20.53164 -18.60705 -17.96579 -17.70203 -16.99483 -16.23996 -15.75454 -15.64825 -15.19331 -15.06718 -14.98795 -14.29244 -14.27214 -14.08681 -13.90237 -13.62551 -13.49672 -13.40461 -12.94145 -12.76762 -12.60884 -12.46047 -11.87634 -11.80036 -11.66278 -11.40563 -11.08966 -11.04381 -10.96376 -10.84727 -10.52720 -10.50138 -10.38359 -9.91609 -9.78447 -9.59472 -9.24337 -8.87168 -7.84542 -7.28261 -6.47186 -4.06558 0.00908 0.53598 1.91579 2.24857 2.65638 2.83828 3.11590 3.11948 3.17009 3.31944 3.60632 3.89531 3.94987 4.03850 4.25726 4.38108 4.53000 4.73295 4.88165 5.06523 5.09469 5.11896 5.24815 5.30328 5.35946 5.37921 5.52946 5.63187 5.65649 5.71026 5.87419 5.95701 6.01989 6.08433 6.25427 6.27303 6.31056 6.55525 6.72667 6.92104 6.98888 7.26913 7.37595 7.45396 7.66253 7.96882 8.04676 8.39156 8.97556 9.67234 10.70387 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.002807 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.758563 B = 9972.202053 C =10941.189691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 C 0.125 3.875 4 N -0.238 5.238 5 N -0.225 5.225 6 C 0.056 3.944 7 C -0.100 4.100 8 C -0.084 4.084 9 C -0.122 4.122 10 C 0.553 3.447 11 O -0.481 6.481 12 N -0.658 5.658 13 C 0.170 3.830 14 C -0.233 4.233 15 C -0.058 4.058 16 C -0.242 4.242 17 C 0.166 3.834 18 O -0.171 6.171 19 C -0.393 4.393 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.183 4.183 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.154 0.846 37 H 0.404 0.596 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.129 0.871 41 H 0.271 0.729 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 17.329 -10.014 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.122 4.122 3 C -0.019 4.019 4 N -0.080 5.080 5 N -0.069 5.069 6 C -0.089 4.089 7 C -0.158 4.158 8 C -0.114 4.114 9 C -0.137 4.137 10 C 0.339 3.661 11 O -0.354 6.354 12 N -0.303 5.303 13 C 0.078 3.922 14 C -0.254 4.254 15 C -0.077 4.077 16 C -0.262 4.262 17 C 0.111 3.889 18 O -0.074 6.074 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.493 5.493 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.205 4.205 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.171 0.829 37 H 0.240 0.760 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.094 15.897 -11.817 19.838 hybrid contribution -0.256 0.499 2.458 2.521 sum 0.838 16.396 -9.359 18.897 Atomic orbital electron populations 1.21588 0.93298 1.02870 1.01459 1.20839 0.97325 0.88507 1.05551 1.23208 0.91635 0.98697 0.88356 1.73091 1.07875 1.03273 1.23737 1.72832 1.07775 0.99395 1.26863 1.22843 0.96990 0.98991 0.90055 1.20694 1.01987 0.88889 1.04226 1.22529 0.94750 0.94362 0.99752 1.21097 1.01700 0.95099 0.95764 1.17928 0.78961 0.86428 0.82797 1.90841 1.44104 1.15128 1.85307 1.43174 1.63416 1.16994 1.06711 1.17108 0.97629 0.92757 0.84746 1.20258 1.08933 0.99152 0.97084 1.20509 0.97288 0.94425 0.95429 1.21211 1.08039 0.94462 1.02457 1.19114 0.92034 0.85189 0.92514 1.83990 1.72330 1.17632 1.33460 1.21347 1.39489 0.97152 0.88904 0.88950 1.25310 0.96320 0.95090 0.99775 1.70051 1.37541 1.06585 1.35119 0.85705 0.78557 0.78926 0.80197 1.19829 1.20230 1.19166 1.20133 1.08189 0.94085 0.98044 0.93279 0.91244 0.92239 0.89982 0.86395 0.89679 0.90046 0.89694 0.82876 0.76005 0.87346 0.86918 0.85361 0.91936 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.54 37.16 0.35 -1.35 16 2 C -0.08 -1.10 5.48 -27.89 -0.15 -1.25 16 3 C 0.13 1.68 6.16 -81.99 -0.51 1.17 16 4 N -0.24 -3.32 11.42 33.81 0.39 -2.93 16 5 N -0.23 -2.84 11.41 33.57 0.38 -2.46 16 6 C 0.06 0.52 6.86 -82.46 -0.57 -0.04 16 7 C -0.10 -0.53 10.19 36.01 0.37 -0.17 16 8 C -0.08 -0.75 9.36 -38.78 -0.36 -1.11 16 9 C -0.12 -1.49 5.92 -104.58 -0.62 -2.11 16 10 C 0.55 7.99 7.46 -12.22 -0.09 7.90 16 11 O -0.48 -8.63 9.72 5.33 0.05 -8.57 16 12 N -0.66 -8.68 5.29 -10.66 -0.06 -8.74 16 13 C 0.17 2.94 6.28 -83.75 -0.53 2.41 16 14 C -0.23 -3.70 9.97 -39.34 -0.39 -4.09 16 15 C -0.06 -0.99 10.03 -39.64 -0.40 -1.39 16 16 C -0.24 -5.09 9.16 -39.36 -0.36 -5.45 16 17 C 0.17 4.01 6.64 -39.13 -0.26 3.75 16 18 O -0.17 -4.90 9.75 0.05 0.00 -4.90 16 19 C -0.39 -10.88 9.49 30.88 0.29 -10.58 16 20 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 23 Si 0.94 20.30 29.55 -169.99 -5.02 15.27 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 C -0.18 -3.97 8.63 -39.20 -0.34 -4.30 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.84 7.01 -51.93 -0.36 0.48 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.12 1.75 5.76 -51.93 -0.30 1.45 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.15 0.77 6.62 -52.48 -0.35 0.42 16 37 H 0.40 3.59 7.02 -40.82 -0.29 3.31 16 38 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.13 3.06 6.30 -52.49 -0.33 2.73 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -33.63 355.58 -6.51 -40.13 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.71 Total: 6.86 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -3.65 Total: -15.61 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 1.47 Total: -38.54 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.05 Total: -13.48 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.63 -6.51 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273476343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.712 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds