Wall clock time and date at job start Tue Mar 31 2020 16:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47467 * 2 1 4 4 N 1.31918 * 120.17586 * 262.39992 * 3 2 1 5 5 N 1.28282 * 122.33023 * 179.97438 * 4 3 2 6 6 C 1.31920 * 122.51830 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00800 * 179.97438 * 6 5 4 8 8 C 1.38489 * 119.97193 * 359.73722 * 6 5 4 9 9 C 1.39747 * 120.17429 * 82.36935 * 3 2 1 10 10 C 1.48093 * 121.14849 * 0.02562 * 9 3 2 11 11 O 1.21535 * 119.99838 * 3.13250 * 10 9 3 12 12 N 1.34778 * 120.00262 * 183.13281 * 10 9 3 13 13 C 1.39839 * 119.99956 * 176.40628 * 12 10 9 14 14 C 1.38979 * 120.03981 * 215.69920 * 13 12 10 15 15 C 1.38150 * 120.06851 * 179.97438 * 14 13 12 16 16 C 1.38174 * 120.13631 * 359.71566 * 15 14 13 17 17 C 1.38909 * 120.07768 * 0.56294 * 16 15 14 18 18 O 1.35753 * 120.03427 * 179.71859 * 17 16 15 19 19 C 1.34827 * 117.00159 * 353.41550 * 18 17 16 20 20 H 1.07999 * 119.99414 * 5.10143 * 19 18 17 21 21 C 1.38648 * 120.00179 * 185.10410 * 19 18 17 22 22 N 1.31557 * 119.99852 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00094 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47074 * 89.99969 * 23 21 19 25 25 H 1.48500 * 109.46931 * 209.99899 * 23 21 19 26 26 H 1.48495 * 109.47115 * 329.99920 * 23 21 19 27 27 C 1.38737 * 120.03544 * 35.68368 * 13 12 10 28 28 H 1.09004 * 109.46689 * 60.00288 * 1 2 3 29 29 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47521 * 300.00289 * 1 2 3 31 31 H 1.08995 * 109.47521 * 239.99711 * 2 1 3 32 32 H 1.09004 * 109.46689 * 119.99712 * 2 1 3 33 33 H 1.09000 * 109.46992 * 90.00346 * 7 6 5 34 34 H 1.09006 * 109.46943 * 209.99431 * 7 6 5 35 35 H 1.08997 * 109.47729 * 329.99757 * 7 6 5 36 36 H 1.08005 * 121.09188 * 180.26259 * 8 6 5 37 37 H 0.96994 * 120.00168 * 356.41055 * 12 10 9 38 38 H 1.08008 * 119.96739 * 359.97438 * 14 13 12 39 39 H 1.08003 * 119.93341 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.96180 * 180.27442 * 16 15 14 41 41 H 0.97008 * 119.99810 * 179.97438 * 22 21 19 42 42 H 1.08001 * 120.07248 * 0.03187 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3956 1.9956 -1.1304 5 7 2.8286 3.2022 -1.1783 6 6 2.9425 3.9579 -0.1030 7 6 3.4586 5.3686 -0.2245 8 6 2.5831 3.4560 1.1367 9 6 2.1153 2.1364 1.1974 10 6 1.7163 1.5238 2.4853 11 8 1.3622 0.3617 2.5215 12 7 1.7457 2.2548 3.6172 13 6 1.2978 1.6996 4.8199 14 6 0.6317 2.4926 5.7468 15 6 0.1886 1.9446 6.9350 16 6 0.4007 0.6058 7.2033 17 6 1.0708 -0.1908 6.2836 18 8 1.2838 -1.5047 6.5505 19 6 0.9429 -1.9428 7.7792 20 1 0.4460 -1.2784 8.4707 21 6 1.2303 -3.2460 8.1551 22 7 1.8352 -4.0553 7.3126 23 14 0.7586 -3.8527 9.8577 24 1 -0.6091 -4.4296 9.8163 25 1 1.7220 -4.8941 10.2965 26 1 0.7880 -2.7168 10.8137 27 6 1.5176 0.3565 5.0891 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.6228 6.0482 -0.3906 34 1 3.9759 5.6466 0.6939 35 1 4.1505 5.4314 -1.0644 36 1 2.6650 4.0602 2.0281 37 1 2.0774 3.1661 3.5975 38 1 0.4604 3.5383 5.5380 39 1 -0.3292 2.5627 7.6536 40 1 0.0491 0.1793 8.1311 41 1 2.0366 -4.9671 7.5757 42 1 2.0352 -0.2618 4.3707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273476343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:05 Heat of formation + Delta-G solvation = 2.082858 kcal Electronic energy + Delta-G solvation = -26761.688659 eV Core-core repulsion = 22900.404253 eV Total energy + Delta-G solvation = -3861.284406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.68040 -41.39056 -40.30365 -38.33562 -36.40757 -35.60069 -34.77456 -34.25333 -32.73584 -31.16684 -30.07516 -28.95839 -27.36153 -26.52276 -25.57586 -23.92156 -23.31972 -22.76779 -21.80489 -20.11529 -19.31980 -18.84976 -18.50807 -17.16747 -17.05080 -16.80705 -16.70945 -16.36372 -16.18358 -15.90207 -15.53639 -15.47364 -15.18771 -14.87876 -14.51639 -14.34849 -14.24057 -14.06606 -13.58750 -13.31702 -13.25279 -13.17970 -12.98965 -12.84356 -12.69475 -12.38980 -12.18358 -12.12491 -11.93194 -11.53946 -11.43728 -11.37039 -11.09540 -10.76904 -10.65032 -10.51499 -9.37955 -8.90517 -8.46293 -6.15587 -0.90562 -0.29752 0.43196 0.70594 1.35105 1.44296 1.53259 1.54897 1.68772 2.18339 2.37365 2.77107 2.83023 3.02428 3.14870 3.19767 3.39039 3.57152 3.66522 3.93691 4.13295 4.15864 4.18644 4.31753 4.36749 4.40114 4.47325 4.58936 4.67339 4.73772 4.79963 4.84793 4.92999 4.97726 5.02028 5.11223 5.20350 5.23510 5.31407 5.37576 5.41507 5.63664 5.74171 6.03131 6.16887 6.25513 6.92935 6.97857 7.50651 7.80092 8.77300 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.002807 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.758563 B = 9972.202053 C =10941.189691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C 0.112 3.888 4 N -0.264 5.264 5 N -0.252 5.252 6 C 0.061 3.939 7 C -0.099 4.099 8 C -0.058 4.058 9 C -0.137 4.137 10 C 0.554 3.446 11 O -0.523 6.523 12 N -0.640 5.640 13 C 0.181 3.819 14 C -0.198 4.198 15 C -0.049 4.049 16 C -0.252 4.252 17 C 0.126 3.874 18 O -0.234 6.234 19 C -0.412 4.412 20 H 0.107 0.893 21 C -0.026 4.026 22 N -0.924 5.924 23 Si 1.021 2.979 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.248 1.248 27 C -0.208 4.208 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.203 0.797 37 H 0.430 0.570 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.122 0.878 41 H 0.272 0.728 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 22.847 -8.967 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 C -0.034 4.034 4 N -0.104 5.104 5 N -0.094 5.094 6 C -0.084 4.084 7 C -0.157 4.157 8 C -0.088 4.088 9 C -0.151 4.151 10 C 0.341 3.659 11 O -0.398 6.398 12 N -0.288 5.288 13 C 0.088 3.912 14 C -0.218 4.218 15 C -0.068 4.068 16 C -0.272 4.272 17 C 0.075 3.925 18 O -0.141 6.141 19 C -0.488 4.488 20 H 0.124 0.876 21 C -0.223 4.223 22 N -0.562 5.562 23 Si 0.840 3.160 24 H -0.189 1.189 25 H -0.198 1.198 26 H -0.171 1.171 27 C -0.229 4.229 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.101 0.899 36 H 0.220 0.780 37 H 0.271 0.729 38 H 0.185 0.815 39 H 0.178 0.822 40 H 0.140 0.860 41 H 0.081 0.919 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.519 21.525 -10.813 24.094 hybrid contribution -0.057 -0.767 1.910 2.060 sum 0.461 20.758 -8.903 22.591 Atomic orbital electron populations 1.21510 0.93124 1.02825 1.01006 1.20715 0.97536 0.89213 1.04601 1.23135 0.92494 0.98633 0.89124 1.73051 1.09020 1.04339 1.24028 1.72757 1.08617 0.99283 1.28784 1.23559 0.95289 1.00276 0.89272 1.20907 1.02733 0.86134 1.05906 1.23041 0.91552 0.92772 1.01415 1.20875 1.03651 0.96708 0.93844 1.18301 0.77941 0.85892 0.83735 1.90860 1.45761 1.17233 1.85967 1.42977 1.62986 1.17950 1.04906 1.17200 0.96602 0.91144 0.86299 1.20909 1.04534 1.01368 0.95009 1.21043 0.96185 0.92801 0.96740 1.21363 1.07935 0.96245 1.01666 1.19668 0.93853 0.84640 0.94336 1.83958 1.75361 1.20399 1.34387 1.21886 1.39684 0.97925 0.89317 0.87602 1.26668 0.96157 0.94979 1.04533 1.70220 1.40807 1.07161 1.37995 0.84556 0.78342 0.78659 0.74443 1.18890 1.19798 1.17146 1.20175 1.09402 0.96225 0.97118 0.92166 0.91172 0.93932 0.89381 0.88778 0.87846 0.86888 0.89853 0.78011 0.72884 0.81511 0.82241 0.86009 0.91933 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.54 71.98 0.69 -2.71 16 2 C -0.08 -2.30 5.48 29.85 0.16 -2.14 16 3 C 0.11 3.01 6.16 42.91 0.26 3.27 16 4 N -0.26 -7.30 11.42 -46.94 -0.54 -7.83 16 5 N -0.25 -5.97 11.41 -47.70 -0.54 -6.51 16 6 C 0.06 0.93 6.86 42.61 0.29 1.23 16 7 C -0.10 -0.57 10.19 71.24 0.73 0.16 16 8 C -0.06 -0.80 9.36 22.79 0.21 -0.58 16 9 C -0.14 -3.13 5.92 -19.84 -0.12 -3.24 16 10 C 0.55 15.61 7.46 86.86 0.65 16.26 16 11 O -0.52 -19.82 9.72 -3.83 -0.04 -19.86 16 12 N -0.64 -14.83 5.29 -305.93 -1.62 -16.45 16 13 C 0.18 5.84 6.28 38.16 0.24 6.07 16 14 C -0.20 -5.16 9.97 22.43 0.22 -4.94 16 15 C -0.05 -1.48 10.03 22.23 0.22 -1.25 16 16 C -0.25 -10.52 9.16 22.42 0.21 -10.31 16 17 C 0.13 6.38 6.64 22.56 0.15 6.53 16 18 O -0.23 -14.56 9.75 -22.74 -0.22 -14.78 16 19 C -0.41 -24.24 9.49 67.92 0.64 -23.59 16 20 H 0.11 5.60 5.21 -2.91 -0.02 5.58 16 21 C -0.03 -1.52 5.49 84.83 0.47 -1.05 16 22 N -0.92 -58.21 13.67 21.61 0.30 -57.91 16 23 Si 1.02 43.10 29.55 68.60 2.03 45.13 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 27 C -0.21 -9.34 8.63 22.52 0.19 -9.15 16 28 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.04 1.26 7.01 -2.39 -0.02 1.24 16 31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.09 3.11 5.76 -2.38 -0.01 3.09 16 33 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.11 0.00 8.09 -2.38 -0.02 -0.02 16 35 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.20 0.60 6.62 -2.91 -0.02 0.58 16 37 H 0.43 5.13 7.02 -92.71 -0.65 4.48 16 38 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 40 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16 41 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 42 H 0.10 5.22 6.30 -2.91 -0.02 5.20 16 Total: -1.00 -85.44 355.58 5.02 -80.42 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.44 Total: 23.25 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 5.22 Total: -25.45 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -2.40 Total: -88.71 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.26 Total: -34.63 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -85.44 5.02 -80.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273476343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.500 kcal (2) G-P(sol) polarization free energy of solvation -85.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds