Wall clock time and date at job start Tue Mar 31 2020 15:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38162 * 120.49813 * 2 1 4 4 N 1.31800 * 120.89688 * 179.68118 * 3 2 1 5 5 C 1.31831 * 122.05023 * 0.63887 * 4 3 2 6 6 C 1.38116 * 120.90065 * 359.64849 * 5 4 3 7 7 C 1.39818 * 120.50288 * 180.27974 * 2 1 3 8 8 C 1.48104 * 120.92163 * 359.97438 * 7 2 1 9 9 O 1.21524 * 120.00473 * 354.02770 * 8 7 2 10 10 N 1.34777 * 119.99712 * 174.03529 * 8 7 2 11 11 C 1.39480 * 119.99920 * 180.02562 * 10 8 7 12 12 N 1.32293 * 119.73139 * 359.97438 * 11 10 8 13 13 C 1.31952 * 121.68977 * 180.02562 * 12 11 10 14 14 C 1.38089 * 120.95647 * 359.97438 * 13 12 11 15 15 C 1.38777 * 119.36369 * 359.97438 * 14 13 12 16 16 C 1.38795 * 118.44502 * 359.73585 * 15 14 13 17 17 O 1.35974 * 120.50132 * 180.28703 * 16 15 14 18 18 C 1.42905 * 116.99649 * 0.23971 * 17 16 15 19 19 C 1.53001 * 109.46902 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.46672 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00615 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99838 * 180.02562 * 20 19 18 23 23 N 1.31522 * 120.00182 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00210 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47291 * 89.99621 * 24 22 20 26 26 H 1.48499 * 109.47092 * 209.99902 * 24 22 20 27 27 H 1.48494 * 109.46960 * 329.99531 * 24 22 20 28 28 H 1.09004 * 109.46886 * 263.15709 * 1 2 3 29 29 H 1.09006 * 109.46947 * 143.15910 * 1 2 3 30 30 H 1.09000 * 109.47362 * 23.15784 * 1 2 3 31 31 H 1.07999 * 119.55220 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.55353 * 179.68066 * 5 4 3 33 33 H 1.08003 * 120.50146 * 180.02562 * 6 5 4 34 34 H 0.97000 * 120.00142 * 359.97438 * 10 8 7 35 35 H 1.08000 * 119.52249 * 179.97438 * 13 12 11 36 36 H 1.08003 * 120.31821 * 180.02562 * 14 13 12 37 37 H 1.07997 * 120.77581 * 180.02562 * 15 14 13 38 38 H 1.08999 * 109.47251 * 300.00311 * 18 17 16 39 39 H 1.08999 * 109.46709 * 60.00349 * 18 17 16 40 40 H 1.08999 * 109.46959 * 299.99923 * 19 18 17 41 41 H 1.08998 * 109.47213 * 59.99982 * 19 18 17 42 42 H 0.96999 * 120.00375 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2082 1.1905 0.0000 4 7 3.5262 1.1996 0.0063 5 6 4.2336 0.0872 0.0004 6 6 3.6141 -1.1472 -0.0056 7 6 2.2167 -1.2047 -0.0059 8 6 1.5083 -2.5053 -0.0117 9 8 0.2985 -2.5388 0.0981 10 7 2.2055 -3.6517 -0.1386 11 6 1.5383 -4.8766 -0.1446 12 7 0.2212 -4.9069 -0.0248 13 6 -0.4489 -6.0436 -0.0252 14 6 0.2046 -7.2534 -0.1520 15 6 1.5862 -7.2702 -0.2814 16 6 2.2648 -6.0594 -0.2839 17 8 3.6179 -6.0268 -0.4141 18 6 4.2868 -7.2822 -0.5505 19 6 5.7926 -7.0459 -0.6833 20 6 6.4980 -8.3697 -0.8278 21 1 5.9293 -9.2878 -0.8248 22 6 7.8696 -8.4089 -0.9629 23 7 8.5623 -7.2909 -0.9661 24 14 8.7441 -10.0499 -1.1413 25 1 8.8410 -10.4053 -2.5798 26 1 10.1082 -9.9493 -0.5632 27 1 7.9782 -11.0996 -0.4226 28 1 -0.3633 -0.1224 1.0204 29 1 -0.3633 -0.8225 -0.6162 30 1 -0.3634 0.9448 -0.4041 31 1 1.6691 2.1262 -0.0004 32 1 5.3122 0.1418 0.0007 33 1 4.2000 -2.0545 -0.0100 34 1 3.1711 -3.6250 -0.2265 35 1 -1.5242 -6.0275 0.0752 36 1 -0.3542 -8.1776 -0.1515 37 1 2.1205 -8.2033 -0.3825 38 1 4.0918 -7.8954 0.3293 39 1 3.9194 -7.7949 -1.4394 40 1 5.9879 -6.4326 -1.5630 41 1 6.1598 -6.5332 0.2058 42 1 9.5272 -7.3184 -1.0614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274604654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:48 Heat of formation + Delta-G solvation = 7.847075 kcal Electronic energy + Delta-G solvation = -26478.683077 eV Core-core repulsion = 22617.648626 eV Total energy + Delta-G solvation = -3861.034451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25409 -40.45129 -38.95613 -37.82918 -35.19113 -33.59418 -33.51294 -32.50194 -31.62301 -30.57781 -29.18590 -27.57207 -25.52383 -25.12032 -23.60001 -23.00176 -22.24548 -21.20803 -20.52406 -18.77877 -17.96568 -17.55791 -16.53076 -16.32923 -16.16001 -15.93112 -15.50554 -15.28924 -15.22719 -14.88636 -14.60288 -14.28579 -14.08078 -13.84937 -13.61177 -13.46185 -12.91625 -12.84689 -12.56883 -12.44082 -12.08764 -11.99196 -11.78162 -11.11568 -11.02636 -10.84837 -10.71937 -10.51580 -10.10727 -10.05439 -9.85204 -9.72775 -9.44693 -9.30866 -9.18819 -9.06849 -8.55607 -7.75816 -6.21347 -4.26470 0.43031 0.82946 1.20339 1.36964 2.67160 2.77697 3.20313 3.26272 3.28503 3.45277 3.58199 3.94678 4.14220 4.17149 4.30834 4.45377 4.56810 4.64922 4.72071 4.87977 4.99705 5.13859 5.15686 5.18230 5.38480 5.39414 5.44789 5.57706 5.59348 5.78736 5.83541 5.84393 5.96932 6.10921 6.14801 6.27190 6.37503 6.48168 6.53624 7.10226 7.28279 7.47712 7.57591 7.65730 7.79177 7.91858 8.10279 8.20018 8.78574 9.38760 10.90014 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.003065 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.049144 B = 9133.933735 C =11568.857739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C 0.091 3.909 4 N -0.466 5.466 5 C 0.089 3.911 6 C -0.134 4.134 7 C -0.094 4.094 8 C 0.550 3.450 9 O -0.464 6.464 10 N -0.645 5.645 11 C 0.326 3.674 12 N -0.443 5.443 13 C 0.075 3.925 14 C -0.157 4.157 15 C -0.147 4.147 16 C 0.070 3.930 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.888 5.888 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.144 0.856 34 H 0.424 0.576 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.131 10.365 1.923 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.079 4.079 3 C -0.066 4.066 4 N -0.174 5.174 5 C -0.067 4.067 6 C -0.155 4.155 7 C -0.105 4.105 8 C 0.336 3.664 9 O -0.334 6.334 10 N -0.293 5.293 11 C 0.094 3.906 12 N -0.158 5.158 13 C -0.081 4.081 14 C -0.178 4.178 15 C -0.174 4.174 16 C 0.019 3.981 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.010 4.010 20 C -0.567 4.567 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.526 5.526 24 Si 0.726 3.274 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.179 0.821 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.263 0.737 35 H 0.175 0.825 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.657 12.220 2.083 19.970 hybrid contribution 1.230 -2.856 -0.246 3.119 sum -14.427 9.364 1.837 17.297 Atomic orbital electron populations 1.20996 0.88954 1.03450 1.03959 1.21108 0.98439 0.92328 0.96064 1.22741 0.89803 0.97299 0.96792 1.67560 1.08274 1.31883 1.09710 1.22774 1.00808 0.87039 0.96061 1.22480 0.93813 1.00728 0.98445 1.20184 0.93833 0.93465 1.02992 1.18266 0.87272 0.83090 0.77780 1.90823 1.12573 1.86053 1.43947 1.43282 1.11648 1.03253 1.71109 1.17716 0.88411 0.83295 1.01206 1.67598 1.04612 1.30022 1.13562 1.22416 1.00036 0.86642 0.99055 1.21918 0.94154 0.99746 1.01984 1.21624 0.95229 0.97426 1.03115 1.19588 0.85371 0.93041 1.00147 1.86096 1.13936 1.36308 1.86574 1.23422 0.96093 0.81632 0.99673 1.19128 0.84874 0.98270 0.98760 1.20934 0.92001 0.91948 1.51848 0.92341 1.24977 0.97463 0.96810 0.94806 1.69958 1.07200 1.26331 1.49126 0.86483 0.78996 0.83479 0.78430 1.20446 1.20987 1.19748 0.90264 0.88588 0.91813 0.82114 0.81781 0.83849 0.73736 0.82493 0.84670 0.83615 0.92866 0.92865 0.95342 0.95330 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.83 36.01 0.32 -0.83 16 2 C -0.08 -0.84 5.93 -104.06 -0.62 -1.46 16 3 C 0.09 0.92 10.83 -17.59 -0.19 0.73 16 4 N -0.47 -5.27 10.34 -13.31 -0.14 -5.40 16 5 C 0.09 0.92 11.17 -17.60 -0.20 0.72 16 6 C -0.13 -1.42 9.60 -39.02 -0.37 -1.79 16 7 C -0.09 -1.13 5.91 -104.65 -0.62 -1.75 16 8 C 0.55 7.84 7.70 -12.21 -0.09 7.74 16 9 O -0.46 -7.52 11.78 5.34 0.06 -7.45 16 10 N -0.64 -9.27 5.35 -12.08 -0.06 -9.33 16 11 C 0.33 5.21 7.44 -154.50 -1.15 4.06 16 12 N -0.44 -7.04 7.87 -12.24 -0.10 -7.13 16 13 C 0.08 0.96 11.17 -17.55 -0.20 0.77 16 14 C -0.16 -1.85 10.10 -39.44 -0.40 -2.24 16 15 C -0.15 -2.05 9.14 -39.18 -0.36 -2.41 16 16 C 0.07 1.12 6.72 -38.90 -0.26 0.86 16 17 O -0.32 -5.61 9.38 -19.66 -0.18 -5.80 16 18 C 0.07 1.25 4.70 37.16 0.17 1.43 16 19 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 20 C -0.53 -13.88 9.11 -34.44 -0.31 -14.20 16 21 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 24 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.14 5.97 -51.93 -0.31 0.83 16 30 H 0.06 0.46 8.05 -51.93 -0.42 0.04 16 31 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.14 1.30 6.58 -52.48 -0.35 0.95 16 34 H 0.42 5.45 6.22 -40.82 -0.25 5.19 16 35 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.15 1.87 6.44 -52.49 -0.34 1.54 16 38 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 39 H 0.05 0.97 7.71 -51.93 -0.40 0.57 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -31.91 359.40 -8.78 -40.69 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.97 Total: 4.34 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -4.52 Total: -6.30 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.44 Total: -46.28 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.12 Total: -13.25 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.91 -8.78 -40.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274604654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.533 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds