Wall clock time and date at job start Tue Mar 31 2020 15:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38162 * 120.49813 * 2 1 4 4 N 1.31800 * 120.89688 * 179.68118 * 3 2 1 5 5 C 1.31831 * 122.05023 * 0.63887 * 4 3 2 6 6 C 1.38116 * 120.90065 * 359.64849 * 5 4 3 7 7 C 1.39818 * 120.50288 * 180.27974 * 2 1 3 8 8 C 1.48104 * 120.92163 * 359.97438 * 7 2 1 9 9 O 1.21524 * 120.00473 * 354.02770 * 8 7 2 10 10 N 1.34777 * 119.99712 * 174.03529 * 8 7 2 11 11 C 1.39480 * 119.99920 * 180.02562 * 10 8 7 12 12 N 1.32293 * 119.73139 * 359.97438 * 11 10 8 13 13 C 1.31952 * 121.68977 * 180.02562 * 12 11 10 14 14 C 1.38089 * 120.95647 * 359.97438 * 13 12 11 15 15 C 1.38777 * 119.36369 * 359.97438 * 14 13 12 16 16 C 1.38795 * 118.44502 * 359.73585 * 15 14 13 17 17 O 1.35974 * 120.50132 * 180.28703 * 16 15 14 18 18 C 1.42905 * 116.99649 * 0.23971 * 17 16 15 19 19 C 1.53001 * 109.46902 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.46672 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00615 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99838 * 180.02562 * 20 19 18 23 23 N 1.31522 * 120.00182 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00210 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47291 * 89.99621 * 24 22 20 26 26 H 1.48499 * 109.47092 * 209.99902 * 24 22 20 27 27 H 1.48494 * 109.46960 * 329.99531 * 24 22 20 28 28 H 1.09004 * 109.46886 * 263.15709 * 1 2 3 29 29 H 1.09006 * 109.46947 * 143.15910 * 1 2 3 30 30 H 1.09000 * 109.47362 * 23.15784 * 1 2 3 31 31 H 1.07999 * 119.55220 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.55353 * 179.68066 * 5 4 3 33 33 H 1.08003 * 120.50146 * 180.02562 * 6 5 4 34 34 H 0.97000 * 120.00142 * 359.97438 * 10 8 7 35 35 H 1.08000 * 119.52249 * 179.97438 * 13 12 11 36 36 H 1.08003 * 120.31821 * 180.02562 * 14 13 12 37 37 H 1.07997 * 120.77581 * 180.02562 * 15 14 13 38 38 H 1.08999 * 109.47251 * 300.00311 * 18 17 16 39 39 H 1.08999 * 109.46709 * 60.00349 * 18 17 16 40 40 H 1.08999 * 109.46959 * 299.99923 * 19 18 17 41 41 H 1.08998 * 109.47213 * 59.99982 * 19 18 17 42 42 H 0.96999 * 120.00375 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2082 1.1905 0.0000 4 7 3.5262 1.1996 0.0063 5 6 4.2336 0.0872 0.0004 6 6 3.6141 -1.1472 -0.0056 7 6 2.2167 -1.2047 -0.0059 8 6 1.5083 -2.5053 -0.0117 9 8 0.2985 -2.5388 0.0981 10 7 2.2055 -3.6517 -0.1386 11 6 1.5383 -4.8766 -0.1446 12 7 0.2212 -4.9069 -0.0248 13 6 -0.4489 -6.0436 -0.0252 14 6 0.2046 -7.2534 -0.1520 15 6 1.5862 -7.2702 -0.2814 16 6 2.2648 -6.0594 -0.2839 17 8 3.6179 -6.0268 -0.4141 18 6 4.2868 -7.2822 -0.5505 19 6 5.7926 -7.0459 -0.6833 20 6 6.4980 -8.3697 -0.8278 21 1 5.9293 -9.2878 -0.8248 22 6 7.8696 -8.4089 -0.9629 23 7 8.5623 -7.2909 -0.9661 24 14 8.7441 -10.0499 -1.1413 25 1 8.8410 -10.4053 -2.5798 26 1 10.1082 -9.9493 -0.5632 27 1 7.9782 -11.0996 -0.4226 28 1 -0.3633 -0.1224 1.0204 29 1 -0.3633 -0.8225 -0.6162 30 1 -0.3634 0.9448 -0.4041 31 1 1.6691 2.1262 -0.0004 32 1 5.3122 0.1418 0.0007 33 1 4.2000 -2.0545 -0.0100 34 1 3.1711 -3.6250 -0.2265 35 1 -1.5242 -6.0275 0.0752 36 1 -0.3542 -8.1776 -0.1515 37 1 2.1205 -8.2033 -0.3825 38 1 4.0918 -7.8954 0.3293 39 1 3.9194 -7.7949 -1.4394 40 1 5.9879 -6.4326 -1.5630 41 1 6.1598 -6.5332 0.2058 42 1 9.5272 -7.3184 -1.0614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274604654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:47 Heat of formation + Delta-G solvation = -11.045439 kcal Electronic energy + Delta-G solvation = -26479.502318 eV Core-core repulsion = 22617.648626 eV Total energy + Delta-G solvation = -3861.853692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.30175 -41.43928 -40.03928 -39.07907 -36.28154 -35.46154 -34.45792 -33.38869 -32.87112 -32.14400 -30.40695 -28.40226 -27.17785 -26.14752 -24.83289 -24.11094 -23.19181 -22.69551 -21.67890 -19.88851 -19.18923 -18.72623 -18.06249 -17.43177 -17.36505 -17.21320 -16.56110 -16.49328 -16.32820 -16.14942 -15.86374 -15.29727 -15.21858 -14.89230 -14.62201 -14.36796 -14.35127 -14.15984 -13.68935 -13.60825 -13.40856 -13.28225 -12.81413 -12.75348 -12.57394 -12.44915 -11.94137 -11.73290 -11.64400 -11.54117 -11.40607 -10.96480 -10.66379 -10.60622 -10.43782 -10.15001 -9.98340 -8.90837 -8.25592 -6.37900 -0.50558 0.02217 0.15968 0.26496 1.42810 1.43442 1.54266 1.62926 1.75428 2.08708 2.43921 2.71301 2.87439 3.09882 3.14881 3.42987 3.55259 3.72096 3.75569 3.83474 3.86538 3.99355 4.10620 4.28933 4.32091 4.36952 4.44869 4.57288 4.68157 4.74189 4.77060 4.82166 4.93458 5.01986 5.12843 5.18902 5.30818 5.37012 5.50617 5.51217 5.57993 5.72879 6.04907 6.08019 6.29806 6.76828 6.80383 6.84204 7.12725 7.32165 8.86866 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.003065 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.049144 B = 9133.933735 C =11568.857739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.083 4.083 3 C 0.095 3.905 4 N -0.481 5.481 5 C 0.086 3.914 6 C -0.137 4.137 7 C -0.110 4.110 8 C 0.548 3.452 9 O -0.488 6.488 10 N -0.646 5.646 11 C 0.308 3.692 12 N -0.470 5.470 13 C 0.075 3.925 14 C -0.142 4.142 15 C -0.148 4.148 16 C 0.044 3.956 17 O -0.330 6.330 18 C 0.083 3.917 19 C 0.030 3.970 20 C -0.545 4.545 21 H 0.070 0.930 22 C 0.005 3.995 23 N -0.928 5.928 24 Si 0.969 3.031 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.260 1.260 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.192 0.808 32 H 0.187 0.813 33 H 0.152 0.848 34 H 0.426 0.574 35 H 0.189 0.811 36 H 0.177 0.823 37 H 0.158 0.842 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.390 9.280 1.957 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.063 4.063 4 N -0.189 5.189 5 C -0.070 4.070 6 C -0.157 4.157 7 C -0.122 4.122 8 C 0.335 3.665 9 O -0.360 6.360 10 N -0.294 5.294 11 C 0.077 3.923 12 N -0.186 5.186 13 C -0.082 4.082 14 C -0.162 4.162 15 C -0.175 4.175 16 C -0.007 4.007 17 O -0.243 6.243 18 C 0.009 3.991 19 C -0.007 4.007 20 C -0.582 4.582 21 H 0.089 0.911 22 C -0.194 4.194 23 N -0.567 5.567 24 Si 0.793 3.207 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.184 1.184 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.209 0.791 32 H 0.204 0.796 33 H 0.169 0.831 34 H 0.266 0.734 35 H 0.206 0.794 36 H 0.194 0.806 37 H 0.175 0.825 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.922 11.136 2.118 20.368 hybrid contribution 1.488 -2.482 -0.245 2.904 sum -15.434 8.654 1.873 17.794 Atomic orbital electron populations 1.20932 0.88262 1.04052 1.03468 1.21319 0.99046 0.92262 0.95921 1.23204 0.89546 0.98055 0.95483 1.67631 1.08934 1.32235 1.10149 1.23147 1.01896 0.86600 0.95348 1.22601 0.93368 1.01452 0.98291 1.20197 0.94522 0.92897 1.04534 1.18611 0.87155 0.83641 0.77057 1.90796 1.13511 1.86484 1.45221 1.43354 1.11827 1.03252 1.70993 1.17909 0.88766 0.83715 1.01948 1.67657 1.04605 1.31770 1.14532 1.23087 1.01502 0.86304 0.97298 1.22314 0.93289 1.01013 0.99595 1.21920 0.96375 0.96928 1.02247 1.19744 0.84398 0.94171 1.02394 1.86021 1.15392 1.35363 1.87525 1.22973 0.93101 0.82334 1.00687 1.18944 0.88538 0.96974 0.96274 1.21394 0.92603 0.93078 1.51161 0.91138 1.25936 0.98495 1.00502 0.94455 1.70092 1.07512 1.28741 1.50363 0.85387 0.77603 0.79083 0.78636 1.19780 1.20948 1.18390 0.90532 0.90883 0.88915 0.79089 0.79648 0.83057 0.73427 0.79409 0.80559 0.82458 0.91725 0.91742 0.97965 0.97898 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 8.83 71.24 0.63 -1.49 16 2 C -0.08 -1.78 5.93 -19.50 -0.12 -1.90 16 3 C 0.09 1.78 10.83 84.68 0.92 2.70 16 4 N -0.48 -10.38 10.34 -196.02 -2.03 -12.41 16 5 C 0.09 1.72 11.17 84.66 0.95 2.66 16 6 C -0.14 -2.95 9.60 22.63 0.22 -2.74 16 7 C -0.11 -2.74 5.91 -19.88 -0.12 -2.86 16 8 C 0.55 16.25 7.70 86.86 0.67 16.92 16 9 O -0.49 -16.35 11.78 -3.79 -0.04 -16.39 16 10 N -0.65 -19.41 5.35 -310.41 -1.66 -21.07 16 11 C 0.31 9.99 7.44 133.02 0.99 10.98 16 12 N -0.47 -14.77 7.87 -192.62 -1.52 -16.29 16 13 C 0.07 1.76 11.17 84.64 0.95 2.70 16 14 C -0.14 -2.89 10.10 22.36 0.23 -2.67 16 15 C -0.15 -3.84 9.14 22.53 0.21 -3.64 16 16 C 0.04 1.39 6.72 22.71 0.15 1.54 16 17 O -0.33 -11.94 9.38 -93.26 -0.88 -12.82 16 18 C 0.08 3.18 4.70 71.98 0.34 3.51 16 19 C 0.03 1.48 5.34 29.85 0.16 1.64 16 20 C -0.54 -28.66 9.11 25.60 0.23 -28.42 16 21 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 22 C 0.01 0.27 5.46 84.65 0.46 0.73 16 23 N -0.93 -53.64 13.29 21.45 0.28 -53.35 16 24 Si 0.97 41.55 29.54 68.60 2.03 43.57 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 28 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.07 1.78 5.97 -2.38 -0.01 1.77 16 30 H 0.09 1.19 8.05 -2.39 -0.02 1.17 16 31 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.15 2.89 6.58 -2.91 -0.02 2.87 16 34 H 0.43 11.72 6.22 -92.71 -0.58 11.14 16 35 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 36 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 37 H 0.16 3.66 6.44 -2.91 -0.02 3.64 16 38 H 0.06 2.29 7.69 -2.39 -0.02 2.28 16 39 H 0.06 2.29 7.71 -2.39 -0.02 2.27 16 40 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -70.33 359.40 3.54 -66.79 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.49 Total: 22.27 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 6.86 Total: -0.31 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -4.92 Total: -103.11 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.92 Total: -29.21 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -70.33 3.54 -66.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274604654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.749 kcal (2) G-P(sol) polarization free energy of solvation -70.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds