Wall clock time and date at job start Tue Mar 31 2020 15:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38225 * 120.42597 * 2 1 4 4 N 1.31851 * 120.76803 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72576 * 359.97438 * 4 3 2 6 6 C 1.38180 * 120.76313 * 359.73343 * 5 4 3 7 7 C 1.38636 * 120.41803 * 179.97438 * 2 1 3 8 8 C 1.50703 * 120.78766 * 359.97438 * 7 2 1 9 9 C 1.53000 * 109.46912 * 84.99963 * 8 7 2 10 10 N 1.46499 * 109.46840 * 179.97438 * 9 8 7 11 11 S 1.65599 * 120.00012 * 165.00017 * 10 9 8 12 12 O 1.42097 * 106.40866 * 178.54114 * 11 10 9 13 13 O 1.42102 * 106.40573 * 311.46330 * 11 10 9 14 14 N 1.65600 * 107.21735 * 65.00259 * 11 10 9 15 15 C 1.46504 * 119.99928 * 269.99996 * 14 11 10 16 16 C 1.46496 * 120.00437 * 90.00036 * 14 11 10 17 17 H 1.09009 * 109.46656 * 0.02562 * 16 14 11 18 18 C 1.53003 * 109.47436 * 240.00502 * 16 14 11 19 19 C 1.50702 * 109.47336 * 119.99648 * 16 14 11 20 20 H 1.07993 * 120.00076 * 0.02562 * 19 16 14 21 21 C 1.37879 * 119.99640 * 179.97438 * 19 16 14 22 22 N 1.31510 * 120.00292 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99687 * 180.02562 * 21 19 16 24 24 H 1.48505 * 109.46854 * 90.00487 * 23 21 19 25 25 H 1.48496 * 109.47417 * 210.00304 * 23 21 19 26 26 H 1.48502 * 109.47284 * 330.00745 * 23 21 19 27 27 H 1.08998 * 109.47449 * 270.01964 * 1 2 3 28 28 H 1.09006 * 109.47168 * 30.01700 * 1 2 3 29 29 H 1.08997 * 109.47601 * 150.01874 * 1 2 3 30 30 H 1.08001 * 119.61469 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.62057 * 179.97438 * 5 4 3 32 32 H 1.07999 * 120.41699 * 180.27014 * 6 5 4 33 33 H 1.09001 * 109.46980 * 325.00090 * 8 7 2 34 34 H 1.08992 * 109.47158 * 205.00196 * 8 7 2 35 35 H 1.09002 * 109.47398 * 300.00078 * 9 8 7 36 36 H 1.09001 * 109.47194 * 60.00258 * 9 8 7 37 37 H 0.97001 * 120.00191 * 345.00817 * 10 9 8 38 38 H 1.09003 * 109.46891 * 90.00096 * 15 14 11 39 39 H 1.09001 * 109.47292 * 209.99924 * 15 14 11 40 40 H 1.09001 * 109.47185 * 329.99917 * 15 14 11 41 41 H 1.08998 * 109.46653 * 299.99383 * 18 16 14 42 42 H 1.09001 * 109.47111 * 59.99510 * 18 16 14 43 43 H 1.08999 * 109.46908 * 179.97438 * 18 16 14 44 44 H 0.97002 * 119.99867 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0821 0.0015 6 6 3.5947 -1.1472 0.0076 7 6 2.2089 -1.1955 0.0005 8 6 1.4830 -2.5162 0.0017 9 6 1.1266 -2.9035 -1.4349 10 7 0.4215 -4.1877 -1.4338 11 16 -0.4076 -4.6782 -2.7808 12 8 -0.9434 -5.9590 -2.4780 13 8 -1.2091 -3.5756 -3.1823 14 7 0.7058 -4.9098 -3.9845 15 6 1.0634 -3.8024 -4.8745 16 6 1.3332 -6.2220 -4.1595 17 1 0.9447 -6.9131 -3.4114 18 6 2.8484 -6.0891 -3.9935 19 6 1.0228 -6.7475 -5.5374 20 1 0.4190 -6.1624 -6.2151 21 6 1.5107 -7.9749 -5.9330 22 7 2.2465 -8.6872 -5.1079 23 14 1.1266 -8.6260 -7.6413 24 1 2.1792 -8.1801 -8.5892 25 1 1.0869 -10.1101 -7.6080 26 1 -0.1916 -8.1053 -8.0847 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6676 2.1276 -0.0004 31 1 5.3046 0.1282 0.0015 32 1 4.1736 -2.0589 0.0128 33 1 0.5705 -2.4287 0.5914 34 1 2.1243 -3.2829 0.4363 35 1 0.4852 -2.1368 -1.8695 36 1 2.0391 -2.9910 -2.0247 37 1 0.4402 -4.7506 -0.6441 38 1 1.9050 -3.2536 -4.4515 39 1 1.3413 -4.1969 -5.8519 40 1 0.2102 -3.1327 -4.9822 41 1 3.2366 -5.3981 -4.7419 42 1 3.0728 -5.7090 -2.9969 43 1 3.3151 -7.0655 -4.1233 44 1 2.5893 -9.5508 -5.3862 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282247767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:34 Heat of formation + Delta-G solvation = -51.323084 kcal Electronic energy + Delta-G solvation = -26386.175900 eV Core-core repulsion = 22658.019590 eV Total energy + Delta-G solvation = -3728.156310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.59395 -36.82115 -36.40789 -36.13556 -35.26949 -33.88135 -32.60190 -32.52616 -29.15169 -29.07799 -27.39935 -25.53777 -25.19509 -24.02516 -22.69213 -21.46157 -20.80654 -18.86529 -17.42043 -17.05758 -16.85197 -16.50450 -16.48728 -15.79883 -15.32692 -15.11483 -14.71617 -14.43853 -14.22791 -13.60070 -13.46813 -13.33726 -13.03209 -12.94878 -12.79229 -12.65472 -12.26685 -12.07533 -12.04364 -11.85327 -11.55603 -11.47813 -11.37484 -11.36440 -11.24670 -10.94165 -10.83611 -10.48700 -10.25633 -10.08324 -9.70010 -9.66132 -9.38597 -9.28433 -9.11959 -8.47886 -8.01057 -6.09757 -4.16321 0.89418 0.96628 1.20664 3.26829 3.34024 3.37467 3.43025 3.56570 4.05124 4.24098 4.38107 4.42388 4.45897 4.66907 4.73194 4.79217 4.95730 5.03569 5.20367 5.21749 5.22355 5.35048 5.46978 5.52174 5.53485 5.64206 5.73062 5.75552 5.92494 6.01667 6.07403 6.15645 6.32441 6.49707 6.63530 6.74683 6.81143 7.00053 7.09142 7.45299 7.60345 7.75969 7.76625 8.02273 8.24962 8.85692 9.49492 10.95962 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.003193 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.292683 B = 8767.763096 C = 9387.344471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.131 4.131 3 C 0.097 3.903 4 N -0.486 5.486 5 C 0.091 3.909 6 C -0.162 4.162 7 C -0.039 4.039 8 C -0.091 4.091 9 C 0.128 3.872 10 N -1.134 6.134 11 S 2.779 3.221 12 O -0.973 6.973 13 O -0.997 6.997 14 N -0.988 5.988 15 C 0.095 3.905 16 C 0.268 3.732 17 H 0.059 0.941 18 C -0.146 4.146 19 C -0.521 4.521 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.890 5.890 23 Si 0.898 3.102 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.412 0.588 38 H 0.035 0.965 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.032 0.968 42 H 0.009 0.991 43 H 0.092 0.908 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.845 15.421 11.597 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.133 4.133 3 C -0.060 4.060 4 N -0.195 5.195 5 C -0.065 4.065 6 C -0.182 4.182 7 C -0.048 4.048 8 C -0.129 4.129 9 C 0.001 3.999 10 N -0.893 5.893 11 S 2.788 3.212 12 O -0.957 6.957 13 O -0.980 6.980 14 N -0.831 5.831 15 C -0.051 4.051 16 C 0.165 3.835 17 H 0.076 0.924 18 C -0.206 4.206 19 C -0.561 4.561 20 H 0.081 0.919 21 C -0.139 4.139 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.198 1.198 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.171 0.829 31 H 0.172 0.828 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.245 0.755 38 H 0.054 0.946 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.028 0.972 43 H 0.110 0.890 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.425 16.048 11.368 19.718 hybrid contribution 0.052 -1.432 -0.555 1.536 sum 1.478 14.616 10.813 18.241 Atomic orbital electron populations 1.20854 0.90087 1.03954 1.02765 1.20862 0.97709 0.93601 1.01124 1.22661 0.89925 0.97376 0.96012 1.67660 1.08348 1.31532 1.11933 1.22729 1.00361 0.87642 0.95796 1.22118 0.94495 0.99935 1.01630 1.20077 0.93691 0.94803 0.96193 1.20837 1.01034 0.93566 0.97493 1.21120 0.97153 0.85033 0.96637 1.56242 1.71314 1.28958 1.32771 1.01930 0.73715 0.72778 0.72771 1.93619 1.77145 1.40650 1.84307 1.93523 1.66640 1.55619 1.82224 1.57641 1.61696 1.19279 1.44463 1.21328 0.99079 0.88397 0.96334 1.18731 0.89745 0.76661 0.98338 0.92367 1.22106 0.99096 1.03078 0.96279 1.21337 1.32468 1.03225 0.99061 0.91890 1.24906 0.94868 0.96466 0.97623 1.69855 1.34736 1.12864 1.35402 0.86492 0.78809 0.78070 0.84021 1.20649 1.21114 1.19812 0.90771 0.90907 0.90451 0.82889 0.82787 0.84529 0.89496 0.89594 0.90423 0.91488 0.75502 0.94597 0.89764 0.91901 0.94867 0.97156 0.88956 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.30 36.00 0.33 -0.58 16 2 C -0.13 -1.21 5.90 -104.48 -0.62 -1.83 16 3 C 0.10 0.94 10.86 -17.55 -0.19 0.75 16 4 N -0.49 -5.36 10.36 -13.26 -0.14 -5.50 16 5 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 6 C -0.16 -1.46 9.80 -39.44 -0.39 -1.85 16 7 C -0.04 -0.37 5.17 -104.31 -0.54 -0.91 16 8 C -0.09 -0.81 4.83 -27.88 -0.13 -0.94 16 9 C 0.13 1.46 6.07 -4.04 -0.02 1.44 16 10 N -1.13 -15.41 6.05 -10.61 -0.06 -15.47 16 11 S 2.78 52.28 6.14 -107.50 -0.66 51.62 16 12 O -0.97 -22.06 16.70 -57.17 -0.95 -23.02 16 13 O -1.00 -19.82 16.21 -57.17 -0.93 -20.75 16 14 N -0.99 -19.89 3.12 -115.84 -0.36 -20.25 16 15 C 0.10 1.65 9.65 59.85 0.58 2.23 16 16 C 0.27 6.42 2.62 -69.08 -0.18 6.24 16 17 H 0.06 1.55 6.91 -51.92 -0.36 1.19 16 18 C -0.15 -3.23 8.97 37.16 0.33 -2.90 16 19 C -0.52 -13.84 7.99 -34.44 -0.28 -14.12 16 20 H 0.06 1.66 7.33 -52.49 -0.38 1.28 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -24.48 11.32 55.43 0.63 -23.86 16 23 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.08 0.66 5.63 -51.93 -0.29 0.37 16 30 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.09 0.69 7.11 -51.93 -0.37 0.33 16 34 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 35 H 0.08 0.92 6.58 -51.93 -0.34 0.58 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.41 4.77 8.65 -34.47 -0.30 4.47 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.54 7.02 -51.93 -0.36 1.18 16 40 H 0.06 1.03 7.02 -51.93 -0.36 0.66 16 41 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 42 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 43 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -33.00 369.62 -9.74 -42.74 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.42 Total: 3.19 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -1.39 Total: -10.18 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: 0.06 Total: -65.07 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -1.88 Total: -43.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 52.28 SS G_CDS: -0.66 Total: 51.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.00 -9.74 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282247767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.582 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds