Wall clock time and date at job start Tue Mar 31 2020 15:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38225 * 120.42597 * 2 1 4 4 N 1.31851 * 120.76803 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72576 * 359.97438 * 4 3 2 6 6 C 1.38180 * 120.76313 * 359.73343 * 5 4 3 7 7 C 1.38636 * 120.41803 * 179.97438 * 2 1 3 8 8 C 1.50703 * 120.78766 * 359.97438 * 7 2 1 9 9 C 1.53000 * 109.46912 * 84.99963 * 8 7 2 10 10 N 1.46499 * 109.46840 * 179.97438 * 9 8 7 11 11 S 1.65599 * 120.00012 * 165.00017 * 10 9 8 12 12 O 1.42097 * 106.40866 * 178.54114 * 11 10 9 13 13 O 1.42102 * 106.40573 * 311.46330 * 11 10 9 14 14 N 1.65600 * 107.21735 * 65.00259 * 11 10 9 15 15 C 1.46504 * 119.99928 * 269.99996 * 14 11 10 16 16 C 1.46496 * 120.00437 * 90.00036 * 14 11 10 17 17 H 1.09009 * 109.46656 * 0.02562 * 16 14 11 18 18 C 1.53003 * 109.47436 * 240.00502 * 16 14 11 19 19 C 1.50702 * 109.47336 * 119.99648 * 16 14 11 20 20 H 1.07993 * 120.00076 * 0.02562 * 19 16 14 21 21 C 1.37879 * 119.99640 * 179.97438 * 19 16 14 22 22 N 1.31510 * 120.00292 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99687 * 180.02562 * 21 19 16 24 24 H 1.48505 * 109.46854 * 90.00487 * 23 21 19 25 25 H 1.48496 * 109.47417 * 210.00304 * 23 21 19 26 26 H 1.48502 * 109.47284 * 330.00745 * 23 21 19 27 27 H 1.08998 * 109.47449 * 270.01964 * 1 2 3 28 28 H 1.09006 * 109.47168 * 30.01700 * 1 2 3 29 29 H 1.08997 * 109.47601 * 150.01874 * 1 2 3 30 30 H 1.08001 * 119.61469 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.62057 * 179.97438 * 5 4 3 32 32 H 1.07999 * 120.41699 * 180.27014 * 6 5 4 33 33 H 1.09001 * 109.46980 * 325.00090 * 8 7 2 34 34 H 1.08992 * 109.47158 * 205.00196 * 8 7 2 35 35 H 1.09002 * 109.47398 * 300.00078 * 9 8 7 36 36 H 1.09001 * 109.47194 * 60.00258 * 9 8 7 37 37 H 0.97001 * 120.00191 * 345.00817 * 10 9 8 38 38 H 1.09003 * 109.46891 * 90.00096 * 15 14 11 39 39 H 1.09001 * 109.47292 * 209.99924 * 15 14 11 40 40 H 1.09001 * 109.47185 * 329.99917 * 15 14 11 41 41 H 1.08998 * 109.46653 * 299.99383 * 18 16 14 42 42 H 1.09001 * 109.47111 * 59.99510 * 18 16 14 43 43 H 1.08999 * 109.46908 * 179.97438 * 18 16 14 44 44 H 0.97002 * 119.99867 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0821 0.0015 6 6 3.5947 -1.1472 0.0076 7 6 2.2089 -1.1955 0.0005 8 6 1.4830 -2.5162 0.0017 9 6 1.1266 -2.9035 -1.4349 10 7 0.4215 -4.1877 -1.4338 11 16 -0.4076 -4.6782 -2.7808 12 8 -0.9434 -5.9590 -2.4780 13 8 -1.2091 -3.5756 -3.1823 14 7 0.7058 -4.9098 -3.9845 15 6 1.0634 -3.8024 -4.8745 16 6 1.3332 -6.2220 -4.1595 17 1 0.9447 -6.9131 -3.4114 18 6 2.8484 -6.0891 -3.9935 19 6 1.0228 -6.7475 -5.5374 20 1 0.4190 -6.1624 -6.2151 21 6 1.5107 -7.9749 -5.9330 22 7 2.2465 -8.6872 -5.1079 23 14 1.1266 -8.6260 -7.6413 24 1 2.1792 -8.1801 -8.5892 25 1 1.0869 -10.1101 -7.6080 26 1 -0.1916 -8.1053 -8.0847 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6676 2.1276 -0.0004 31 1 5.3046 0.1282 0.0015 32 1 4.1736 -2.0589 0.0128 33 1 0.5705 -2.4287 0.5914 34 1 2.1243 -3.2829 0.4363 35 1 0.4852 -2.1368 -1.8695 36 1 2.0391 -2.9910 -2.0247 37 1 0.4402 -4.7506 -0.6441 38 1 1.9050 -3.2536 -4.4515 39 1 1.3413 -4.1969 -5.8519 40 1 0.2102 -3.1327 -4.9822 41 1 3.2366 -5.3981 -4.7419 42 1 3.0728 -5.7090 -2.9969 43 1 3.3151 -7.0655 -4.1233 44 1 2.5893 -9.5508 -5.3862 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282247767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:33 Heat of formation + Delta-G solvation = -74.569234 kcal Electronic energy + Delta-G solvation = -26387.183929 eV Core-core repulsion = 22658.019590 eV Total energy + Delta-G solvation = -3729.164339 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27445 -38.35220 -37.90215 -37.33000 -36.88601 -34.72779 -34.51337 -33.22246 -30.91377 -29.92476 -28.05263 -27.23200 -26.99361 -24.87285 -23.38410 -22.64022 -22.12112 -20.28741 -18.87649 -18.59298 -18.14096 -17.71583 -17.40777 -17.10930 -16.75000 -16.03658 -15.90861 -15.55610 -15.18627 -15.02920 -14.85391 -14.38797 -14.21579 -14.03628 -13.77822 -13.56898 -13.49035 -13.44214 -13.20574 -13.13472 -13.01797 -12.96260 -12.78335 -12.69672 -12.68135 -12.61356 -12.25083 -12.12445 -12.09182 -11.88566 -11.16123 -10.54101 -10.48973 -10.38489 -10.35395 -9.78412 -9.65601 -8.11641 -6.24745 -0.32616 0.22715 0.31046 1.42279 1.44632 1.53769 2.03736 2.43510 2.63115 2.86088 3.16948 3.44087 3.61236 3.72552 3.81064 3.94469 4.06297 4.09321 4.15038 4.25899 4.43973 4.59071 4.61880 4.74160 4.75961 4.80475 4.80899 4.85660 4.97690 5.02557 5.03569 5.08731 5.15729 5.19273 5.26673 5.31454 5.48203 5.61899 5.69529 5.84771 5.88092 6.07115 6.21346 6.31047 6.82845 7.07522 7.44074 8.92457 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.003193 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.292683 B = 8767.763096 C = 9387.344471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.135 4.135 3 C 0.085 3.915 4 N -0.512 5.512 5 C 0.079 3.921 6 C -0.164 4.164 7 C -0.049 4.049 8 C -0.082 4.082 9 C 0.122 3.878 10 N -1.117 6.117 11 S 2.796 3.204 12 O -1.017 7.017 13 O -1.008 7.008 14 N -0.996 5.996 15 C 0.091 3.909 16 C 0.273 3.727 17 H 0.026 0.974 18 C -0.133 4.133 19 C -0.540 4.540 20 H 0.057 0.943 21 C 0.018 3.982 22 N -0.913 5.913 23 Si 0.954 3.046 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.275 1.275 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.170 0.830 31 H 0.173 0.827 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.424 0.576 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.037 0.963 43 H 0.065 0.935 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 16.547 11.998 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.137 4.137 3 C -0.072 4.072 4 N -0.221 5.221 5 C -0.077 4.077 6 C -0.183 4.183 7 C -0.058 4.058 8 C -0.121 4.121 9 C -0.004 4.004 10 N -0.880 5.880 11 S 2.805 3.195 12 O -1.001 7.001 13 O -0.992 6.992 14 N -0.838 5.838 15 C -0.055 4.055 16 C 0.169 3.831 17 H 0.044 0.956 18 C -0.193 4.193 19 C -0.580 4.580 20 H 0.075 0.925 21 C -0.182 4.182 22 N -0.552 5.552 23 Si 0.780 3.220 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.200 1.200 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.187 0.813 31 H 0.190 0.810 32 H 0.172 0.828 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.260 0.740 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.927 17.189 11.764 20.918 hybrid contribution -0.112 -1.688 -0.613 1.800 sum 1.814 15.500 11.151 19.181 Atomic orbital electron populations 1.20884 0.89089 1.04003 1.03604 1.21058 0.98500 0.93513 1.00638 1.22990 0.89802 0.98376 0.96009 1.67670 1.09138 1.32490 1.12804 1.23102 1.01377 0.87591 0.95667 1.22342 0.94579 1.00467 1.00938 1.20200 0.94022 0.94950 0.96633 1.20776 1.01821 0.93728 0.95771 1.21329 0.96889 0.83522 0.98682 1.55737 1.70981 1.29940 1.31366 1.01186 0.73501 0.71677 0.73115 1.93558 1.78420 1.43086 1.85028 1.93504 1.67210 1.55567 1.82876 1.57522 1.61567 1.18701 1.46010 1.21485 1.00631 0.87764 0.95573 1.18393 0.90860 0.77790 0.96052 0.95602 1.21894 0.97401 1.01848 0.98110 1.21675 1.32345 1.03608 1.00324 0.92504 1.25615 0.94892 0.96812 1.00842 1.69967 1.35380 1.13077 1.36776 0.85619 0.78625 0.77366 0.80390 1.19530 1.20974 1.19984 0.89508 0.89958 0.91277 0.81288 0.81005 0.82824 0.88480 0.88192 0.90633 0.91122 0.74038 0.91560 0.91046 0.91002 0.94126 0.94433 0.91642 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.30 71.23 0.66 -0.91 16 2 C -0.14 -2.25 5.90 -19.77 -0.12 -2.36 16 3 C 0.08 1.51 10.86 84.69 0.92 2.43 16 4 N -0.51 -10.65 10.36 -195.85 -2.03 -12.68 16 5 C 0.08 1.37 11.18 84.67 0.95 2.31 16 6 C -0.16 -2.59 9.80 22.36 0.22 -2.37 16 7 C -0.05 -0.82 5.17 -19.67 -0.10 -0.92 16 8 C -0.08 -1.24 4.83 29.85 0.14 -1.10 16 9 C 0.12 2.49 6.07 86.38 0.52 3.02 16 10 N -1.12 -28.35 6.05 -187.49 -1.14 -29.48 16 11 S 2.80 103.35 6.14 -56.49 -0.35 103.00 16 12 O -1.02 -46.60 16.70 -128.00 -2.14 -48.74 16 13 O -1.01 -39.08 16.21 -128.00 -2.08 -41.15 16 14 N -1.00 -39.38 3.12 -520.42 -1.62 -41.00 16 15 C 0.09 3.03 9.65 127.77 1.23 4.26 16 16 C 0.27 13.11 2.62 44.25 0.12 13.23 16 17 H 0.03 1.42 6.91 -2.38 -0.02 1.40 16 18 C -0.13 -5.77 8.97 71.98 0.65 -5.13 16 19 C -0.54 -28.87 7.99 25.60 0.20 -28.67 16 20 H 0.06 3.02 7.33 -2.91 -0.02 3.00 16 21 C 0.02 0.99 5.30 84.66 0.45 1.44 16 22 N -0.91 -50.65 11.32 21.45 0.24 -50.40 16 23 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 0.92 8.09 -2.38 -0.02 0.90 16 29 H 0.07 1.04 5.63 -2.39 -0.01 1.03 16 30 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.10 1.28 7.11 -2.39 -0.02 1.26 16 34 H 0.10 1.25 8.07 -2.39 -0.02 1.23 16 35 H 0.08 1.62 6.58 -2.39 -0.02 1.60 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.42 9.00 8.65 -96.75 -0.84 8.17 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 2.55 7.02 -2.39 -0.02 2.53 16 40 H 0.07 2.24 7.02 -2.39 -0.02 2.22 16 41 H 0.04 1.65 7.67 -2.39 -0.02 1.64 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 44 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -70.78 369.62 -1.06 -71.83 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.18 Total: 18.44 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 5.85 Total: -14.76 kcal Atomic # 7 Polarization: -129.02 SS G_CDS: -4.55 Total: -133.56 kcal Atomic # 8 Polarization: -85.68 SS G_CDS: -4.21 Total: -89.89 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 103.35 SS G_CDS: -0.35 Total: 103.00 kcal Total: -70.78 -1.06 -71.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282247767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.736 kcal (2) G-P(sol) polarization free energy of solvation -70.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds