Wall clock time and date at job start Tue Mar 31 2020 15:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.78770 * 0.04459 * 7 2 1 9 9 C 1.52999 * 109.47196 * 84.97951 * 8 7 2 10 10 N 1.46502 * 109.47384 * 179.97438 * 9 8 7 11 11 S 1.65595 * 120.00259 * 164.99435 * 10 9 8 12 12 O 1.42101 * 106.40201 * 178.54060 * 11 10 9 13 13 O 1.42101 * 106.40585 * 311.46567 * 11 10 9 14 14 N 1.65599 * 107.21598 * 65.00541 * 11 10 9 15 15 C 1.46499 * 120.00361 * 89.99659 * 14 11 10 16 16 C 1.46507 * 120.00131 * 269.99984 * 14 11 10 17 17 H 1.09005 * 109.46671 * 359.97438 * 16 14 11 18 18 C 1.53002 * 109.47302 * 119.99824 * 16 14 11 19 19 C 1.50698 * 109.46990 * 240.00170 * 16 14 11 20 20 H 1.07990 * 120.00297 * 359.97438 * 19 16 14 21 21 C 1.37882 * 119.99836 * 179.97438 * 19 16 14 22 22 N 1.31520 * 120.00022 * 359.97438 * 21 19 16 23 23 Si 1.86795 * 120.00133 * 179.97438 * 21 19 16 24 24 H 1.48505 * 109.46949 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47103 * 119.99970 * 23 21 19 26 26 H 1.48499 * 109.47253 * 240.00421 * 23 21 19 27 27 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 28 28 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 29 29 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 30 30 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 31 31 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 32 32 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46909 * 204.97455 * 8 7 2 34 34 H 1.08993 * 109.47161 * 324.97276 * 8 7 2 35 35 H 1.09004 * 109.47233 * 299.99768 * 9 8 7 36 36 H 1.09005 * 109.47259 * 59.99816 * 9 8 7 37 37 H 0.97000 * 119.99727 * 345.00096 * 10 9 8 38 38 H 1.09004 * 109.47040 * 90.00227 * 15 14 11 39 39 H 1.09001 * 109.47304 * 209.99987 * 15 14 11 40 40 H 1.08997 * 109.47039 * 330.00355 * 15 14 11 41 41 H 1.08993 * 109.46694 * 59.99934 * 18 16 14 42 42 H 1.08997 * 109.47308 * 180.02562 * 18 16 14 43 43 H 1.09003 * 109.47003 * 300.00409 * 18 16 14 44 44 H 0.96997 * 120.00090 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0001 9 6 1.1277 -2.9024 -1.4370 10 7 0.4226 -4.1866 -1.4376 11 16 -0.4057 -4.6759 -2.7854 12 8 -0.9416 -5.9570 -2.4840 13 8 -1.2069 -3.5730 -3.1866 14 7 0.7086 -4.9066 -3.9885 15 6 1.3362 -6.2186 -4.1641 16 6 1.0669 -3.7984 -4.8774 17 1 0.5020 -2.9097 -4.5959 18 6 2.5648 -3.5110 -4.7560 19 6 0.7406 -4.1706 -6.3008 20 1 0.3098 -5.1360 -6.5213 21 6 0.9919 -3.2784 -7.3216 22 7 1.5161 -2.1024 -7.0529 23 14 0.5881 -3.7398 -9.0860 24 1 0.0110 -5.1077 -9.1202 25 1 -0.3960 -2.7740 -9.6374 26 1 1.8276 -3.7046 -9.9030 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5136 30 1 1.6675 2.1276 0.0004 31 1 5.3046 0.1284 0.0005 32 1 4.1736 -2.0589 -0.0009 33 1 2.1241 -3.2832 0.4345 34 1 0.5701 -2.4292 0.5893 35 1 0.4865 -2.1353 -1.8715 36 1 2.0406 -2.9894 -2.0262 37 1 0.4408 -4.7501 -0.6483 38 1 0.7395 -6.8177 -4.8521 39 1 2.3394 -6.0901 -4.5706 40 1 1.3966 -6.7243 -3.2005 41 1 3.1292 -4.3998 -5.0377 42 1 2.8313 -2.6863 -5.4169 43 1 2.8008 -3.2419 -3.7264 44 1 1.6933 -1.4749 -7.7710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282247770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:39 Heat of formation + Delta-G solvation = -49.863290 kcal Electronic energy + Delta-G solvation = -26758.287853 eV Core-core repulsion = 23030.194844 eV Total energy + Delta-G solvation = -3728.093009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.44715 -36.82807 -36.32985 -36.13574 -35.25228 -33.77544 -32.59750 -32.39612 -29.15556 -28.98379 -27.25481 -25.62443 -25.18137 -23.91598 -22.55649 -21.32538 -20.79722 -18.87323 -17.40498 -16.95716 -16.80613 -16.47535 -16.20300 -15.95828 -15.18855 -14.99380 -14.68732 -14.35025 -14.12403 -13.55619 -13.43655 -13.30228 -12.91981 -12.91411 -12.80936 -12.59834 -12.11516 -12.02643 -11.96629 -11.75528 -11.54941 -11.40646 -11.38804 -11.30138 -11.23620 -10.99032 -10.82368 -10.44658 -10.30530 -10.04351 -9.56213 -9.51747 -9.31507 -9.25918 -8.96617 -8.47548 -8.00733 -6.09280 -4.15657 1.04531 1.07136 1.24637 3.26792 3.35150 3.38913 3.46120 3.70742 4.06812 4.38420 4.38890 4.53291 4.57988 4.81123 4.87473 4.89072 5.04231 5.12479 5.22276 5.33571 5.34781 5.49264 5.52964 5.59373 5.66061 5.69974 5.83206 5.87668 6.04998 6.12344 6.12545 6.28370 6.35850 6.59396 6.64211 6.73843 6.76038 6.95936 7.10558 7.45258 7.60612 7.76247 7.90943 8.01346 8.25112 8.86958 9.50425 10.96447 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.004244 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.455232 B = 6595.774065 C = 7879.340256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.129 4.129 3 C 0.099 3.901 4 N -0.486 5.486 5 C 0.091 3.909 6 C -0.162 4.162 7 C -0.039 4.039 8 C -0.088 4.088 9 C 0.122 3.878 10 N -1.135 6.135 11 S 2.779 3.221 12 O -0.997 6.997 13 O -0.973 6.973 14 N -0.990 5.990 15 C 0.111 3.889 16 C 0.267 3.733 17 H 0.059 0.941 18 C -0.149 4.149 19 C -0.519 4.519 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.890 5.890 23 Si 0.898 3.102 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.284 1.284 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.409 0.591 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.034 0.966 42 H 0.093 0.907 43 H 0.011 0.989 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 0.780 16.073 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.131 4.131 3 C -0.058 4.058 4 N -0.194 5.194 5 C -0.065 4.065 6 C -0.182 4.182 7 C -0.048 4.048 8 C -0.127 4.127 9 C -0.005 4.005 10 N -0.894 5.894 11 S 2.788 3.212 12 O -0.981 6.981 13 O -0.957 6.957 14 N -0.833 5.833 15 C -0.035 4.035 16 C 0.164 3.836 17 H 0.076 0.924 18 C -0.209 4.209 19 C -0.559 4.559 20 H 0.081 0.919 21 C -0.139 4.139 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.210 1.210 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.171 0.829 31 H 0.171 0.829 32 H 0.153 0.847 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.241 0.759 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.112 0.888 43 H 0.030 0.970 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.227 1.751 15.738 16.161 hybrid contribution -0.024 -1.197 -0.697 1.385 sum 3.203 0.555 15.041 15.389 Atomic orbital electron populations 1.20855 0.90101 1.04180 1.02536 1.20849 0.97725 0.93612 1.00897 1.22659 0.89913 0.97406 0.95854 1.67651 1.08363 1.31510 1.11889 1.22698 1.00299 0.87676 0.95851 1.22061 0.94446 0.99830 1.01845 1.20036 0.93681 0.94766 0.96310 1.20814 1.00825 0.93559 0.97478 1.21266 0.97799 0.84884 0.96505 1.56220 1.71637 1.29171 1.32336 1.01963 0.73831 0.72933 0.72489 1.93550 1.77727 1.41773 1.85011 1.93597 1.65847 1.54629 1.81588 1.57686 1.61235 1.18479 1.45946 1.21129 0.99167 0.83392 0.99860 1.18750 0.92794 0.83405 0.88678 0.92380 1.22174 0.98416 1.02302 0.97976 1.21359 1.41629 1.02135 0.90757 0.91888 1.24908 0.94895 0.94828 0.99247 1.69862 1.43560 1.06909 1.32533 0.86446 0.78023 0.78661 0.84314 1.19730 1.20896 1.20995 0.90902 0.90781 0.90426 0.82865 0.82869 0.84717 0.89918 0.89640 0.90001 0.90783 0.75921 0.93275 0.91000 0.93325 0.94694 0.88827 0.97037 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.30 36.00 0.33 -0.81 16 2 C -0.13 -1.45 5.90 -104.49 -0.62 -2.06 16 3 C 0.10 1.15 10.86 -17.55 -0.19 0.96 16 4 N -0.49 -6.24 10.36 -13.26 -0.14 -6.38 16 5 C 0.09 1.01 11.18 -17.55 -0.20 0.82 16 6 C -0.16 -1.69 9.80 -39.44 -0.39 -2.08 16 7 C -0.04 -0.43 5.17 -104.31 -0.54 -0.97 16 8 C -0.09 -0.87 4.83 -27.88 -0.13 -1.00 16 9 C 0.12 1.61 6.07 -4.04 -0.02 1.59 16 10 N -1.14 -15.42 6.05 -10.61 -0.06 -15.49 16 11 S 2.78 52.44 6.09 -107.50 -0.66 51.79 16 12 O -1.00 -20.09 17.21 -57.17 -0.98 -21.08 16 13 O -0.97 -21.99 16.17 -57.17 -0.92 -22.92 16 14 N -0.99 -19.95 3.12 -115.84 -0.36 -20.31 16 15 C 0.11 1.93 9.53 59.85 0.57 2.50 16 16 C 0.27 6.33 2.62 -69.08 -0.18 6.15 16 17 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 18 C -0.15 -3.26 8.95 37.16 0.33 -2.93 16 19 C -0.52 -13.81 8.37 -34.44 -0.29 -14.10 16 20 H 0.06 1.68 7.64 -52.49 -0.40 1.28 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.89 -24.48 11.32 55.43 0.63 -23.85 16 23 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.08 0.83 5.63 -51.93 -0.29 0.53 16 30 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 34 H 0.09 0.75 7.10 -51.93 -0.37 0.38 16 35 H 0.08 1.23 6.58 -51.93 -0.34 0.89 16 36 H 0.07 1.04 6.18 -51.93 -0.32 0.71 16 37 H 0.41 4.30 8.65 -34.47 -0.30 4.00 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 40 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 41 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 42 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 43 H 0.01 0.21 6.18 -51.93 -0.32 -0.12 16 44 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -33.18 365.85 -9.61 -42.79 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.19 Total: 4.26 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -1.41 Total: -10.33 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: 0.06 Total: -66.03 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -1.91 Total: -43.99 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 52.44 SS G_CDS: -0.66 Total: 51.79 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.18 -9.61 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282247770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.071 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds