Wall clock time and date at job start Tue Mar 31 2020 15:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.78770 * 0.04459 * 7 2 1 9 9 C 1.52999 * 109.47196 * 84.97951 * 8 7 2 10 10 N 1.46502 * 109.47384 * 179.97438 * 9 8 7 11 11 S 1.65595 * 120.00259 * 164.99435 * 10 9 8 12 12 O 1.42101 * 106.40201 * 178.54060 * 11 10 9 13 13 O 1.42101 * 106.40585 * 311.46567 * 11 10 9 14 14 N 1.65599 * 107.21598 * 65.00541 * 11 10 9 15 15 C 1.46499 * 120.00361 * 89.99659 * 14 11 10 16 16 C 1.46507 * 120.00131 * 269.99984 * 14 11 10 17 17 H 1.09005 * 109.46671 * 359.97438 * 16 14 11 18 18 C 1.53002 * 109.47302 * 119.99824 * 16 14 11 19 19 C 1.50698 * 109.46990 * 240.00170 * 16 14 11 20 20 H 1.07990 * 120.00297 * 359.97438 * 19 16 14 21 21 C 1.37882 * 119.99836 * 179.97438 * 19 16 14 22 22 N 1.31520 * 120.00022 * 359.97438 * 21 19 16 23 23 Si 1.86795 * 120.00133 * 179.97438 * 21 19 16 24 24 H 1.48505 * 109.46949 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47103 * 119.99970 * 23 21 19 26 26 H 1.48499 * 109.47253 * 240.00421 * 23 21 19 27 27 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 28 28 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 29 29 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 30 30 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 31 31 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 32 32 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46909 * 204.97455 * 8 7 2 34 34 H 1.08993 * 109.47161 * 324.97276 * 8 7 2 35 35 H 1.09004 * 109.47233 * 299.99768 * 9 8 7 36 36 H 1.09005 * 109.47259 * 59.99816 * 9 8 7 37 37 H 0.97000 * 119.99727 * 345.00096 * 10 9 8 38 38 H 1.09004 * 109.47040 * 90.00227 * 15 14 11 39 39 H 1.09001 * 109.47304 * 209.99987 * 15 14 11 40 40 H 1.08997 * 109.47039 * 330.00355 * 15 14 11 41 41 H 1.08993 * 109.46694 * 59.99934 * 18 16 14 42 42 H 1.08997 * 109.47308 * 180.02562 * 18 16 14 43 43 H 1.09003 * 109.47003 * 300.00409 * 18 16 14 44 44 H 0.96997 * 120.00090 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0001 9 6 1.1277 -2.9024 -1.4370 10 7 0.4226 -4.1866 -1.4376 11 16 -0.4057 -4.6759 -2.7854 12 8 -0.9416 -5.9570 -2.4840 13 8 -1.2069 -3.5730 -3.1866 14 7 0.7086 -4.9066 -3.9885 15 6 1.3362 -6.2186 -4.1641 16 6 1.0669 -3.7984 -4.8774 17 1 0.5020 -2.9097 -4.5959 18 6 2.5648 -3.5110 -4.7560 19 6 0.7406 -4.1706 -6.3008 20 1 0.3098 -5.1360 -6.5213 21 6 0.9919 -3.2784 -7.3216 22 7 1.5161 -2.1024 -7.0529 23 14 0.5881 -3.7398 -9.0860 24 1 0.0110 -5.1077 -9.1202 25 1 -0.3960 -2.7740 -9.6374 26 1 1.8276 -3.7046 -9.9030 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5136 30 1 1.6675 2.1276 0.0004 31 1 5.3046 0.1284 0.0005 32 1 4.1736 -2.0589 -0.0009 33 1 2.1241 -3.2832 0.4345 34 1 0.5701 -2.4292 0.5893 35 1 0.4865 -2.1353 -1.8715 36 1 2.0406 -2.9894 -2.0262 37 1 0.4408 -4.7501 -0.6483 38 1 0.7395 -6.8177 -4.8521 39 1 2.3394 -6.0901 -4.5706 40 1 1.3966 -6.7243 -3.2005 41 1 3.1292 -4.3998 -5.0377 42 1 2.8313 -2.6863 -5.4169 43 1 2.8008 -3.2419 -3.7264 44 1 1.6933 -1.4749 -7.7710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282247770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:38 Heat of formation + Delta-G solvation = -73.658356 kcal Electronic energy + Delta-G solvation = -26759.319684 eV Core-core repulsion = 23030.194844 eV Total energy + Delta-G solvation = -3729.124840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.26728 -38.38788 -37.89563 -37.34323 -36.88464 -34.73547 -34.52182 -33.22547 -30.91721 -29.93178 -28.06533 -27.29590 -27.00162 -24.89985 -23.38847 -22.61327 -22.14351 -20.31602 -18.91888 -18.55031 -18.08367 -17.71514 -17.44913 -17.16000 -16.71848 -16.02970 -15.91079 -15.64164 -15.14145 -15.05471 -14.85204 -14.58187 -14.22936 -14.07102 -13.71378 -13.57629 -13.53876 -13.35022 -13.21703 -13.14640 -12.99324 -12.96526 -12.82324 -12.72462 -12.71361 -12.58364 -12.22040 -12.16444 -12.07588 -11.87419 -11.12415 -10.57115 -10.48969 -10.36679 -10.35046 -9.78225 -9.67287 -8.12126 -6.25156 -0.34688 0.23329 0.31783 1.40480 1.43853 1.53912 2.03919 2.42972 2.62990 2.86306 3.16530 3.41647 3.61277 3.72526 3.81074 3.96650 4.05945 4.06696 4.13108 4.24355 4.44052 4.55406 4.60408 4.69221 4.74213 4.79019 4.84308 4.85192 4.97271 5.01264 5.04295 5.10122 5.13259 5.17330 5.22726 5.30042 5.47743 5.61901 5.71517 5.85218 5.88163 6.11139 6.21472 6.31598 6.82717 7.07636 7.43996 8.91878 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.004244 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.455232 B = 6595.774065 C = 7879.340256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.138 4.138 3 C 0.082 3.918 4 N -0.513 5.513 5 C 0.077 3.923 6 C -0.162 4.162 7 C -0.052 4.052 8 C -0.078 4.078 9 C 0.121 3.879 10 N -1.111 6.111 11 S 2.795 3.205 12 O -1.009 7.009 13 O -1.016 7.016 14 N -0.998 5.998 15 C 0.104 3.896 16 C 0.273 3.727 17 H 0.026 0.974 18 C -0.136 4.136 19 C -0.538 4.538 20 H 0.055 0.945 21 C 0.019 3.981 22 N -0.912 5.912 23 Si 0.953 3.047 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.167 0.833 31 H 0.175 0.825 32 H 0.160 0.840 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.427 0.573 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 -0.423 17.319 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C -0.075 4.075 4 N -0.222 5.222 5 C -0.079 4.079 6 C -0.181 4.181 7 C -0.061 4.061 8 C -0.116 4.116 9 C -0.006 4.006 10 N -0.875 5.875 11 S 2.804 3.196 12 O -0.993 6.993 13 O -0.999 6.999 14 N -0.840 5.840 15 C -0.042 4.042 16 C 0.169 3.831 17 H 0.043 0.957 18 C -0.196 4.196 19 C -0.577 4.577 20 H 0.073 0.927 21 C -0.181 4.181 22 N -0.552 5.552 23 Si 0.779 3.221 24 H -0.195 1.195 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.184 0.816 31 H 0.192 0.808 32 H 0.178 0.822 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.264 0.736 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.091 0.514 16.997 17.490 hybrid contribution -0.298 -0.819 -1.014 1.337 sum 3.792 -0.305 15.984 16.430 Atomic orbital electron populations 1.20874 0.89298 1.03732 1.03649 1.21073 0.98473 0.93794 1.00674 1.22957 0.89928 0.98361 0.96219 1.67654 1.09026 1.32678 1.12814 1.23144 1.01441 0.87677 0.95654 1.22362 0.94453 1.00567 1.00727 1.20253 0.94194 0.95070 0.96551 1.20772 1.01943 0.93722 0.95168 1.21305 0.96735 0.83702 0.98831 1.55621 1.70920 1.29589 1.31369 1.01247 0.73522 0.71964 0.72867 1.93526 1.78236 1.42269 1.85261 1.93547 1.67537 1.56117 1.82689 1.57574 1.61471 1.18687 1.46259 1.21333 0.99007 0.82140 1.01681 1.18397 0.93426 0.83351 0.87935 0.95662 1.21956 0.96991 1.01518 0.99102 1.21685 1.41578 1.01852 0.92614 0.92682 1.25603 0.94943 0.94875 1.02679 1.69976 1.44194 1.07559 1.33449 0.85589 0.77963 0.78230 0.80339 1.19485 1.21089 1.20018 0.88942 0.90503 0.91590 0.81557 0.80805 0.82226 0.87146 0.88368 0.92313 0.91322 0.73600 0.94223 0.90361 0.89980 0.93817 0.91694 0.94196 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 9.30 71.24 0.66 -1.52 16 2 C -0.14 -2.98 5.90 -19.78 -0.12 -3.10 16 3 C 0.08 1.88 10.86 84.68 0.92 2.80 16 4 N -0.51 -12.93 10.36 -195.85 -2.03 -14.95 16 5 C 0.08 1.61 11.18 84.67 0.95 2.56 16 6 C -0.16 -3.03 9.80 22.36 0.22 -2.81 16 7 C -0.05 -1.05 5.17 -19.67 -0.10 -1.15 16 8 C -0.08 -1.32 4.83 29.85 0.14 -1.17 16 9 C 0.12 2.99 6.07 86.38 0.52 3.52 16 10 N -1.11 -27.90 6.05 -187.48 -1.14 -29.04 16 11 S 2.80 103.36 6.09 -56.49 -0.34 103.02 16 12 O -1.01 -39.22 17.21 -128.00 -2.20 -41.42 16 13 O -1.02 -46.63 16.17 -128.00 -2.07 -48.70 16 14 N -1.00 -39.46 3.12 -520.42 -1.62 -41.09 16 15 C 0.10 3.44 9.53 127.77 1.22 4.65 16 16 C 0.27 13.05 2.62 44.24 0.12 13.17 16 17 H 0.03 1.38 6.91 -2.38 -0.02 1.37 16 18 C -0.14 -5.87 8.95 71.98 0.64 -5.23 16 19 C -0.54 -28.86 8.37 25.60 0.21 -28.65 16 20 H 0.05 2.96 7.64 -2.92 -0.02 2.94 16 21 C 0.02 1.02 5.30 84.65 0.45 1.47 16 22 N -0.91 -50.88 11.32 21.45 0.24 -50.63 16 23 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.34 8.09 -2.38 -0.02 1.32 16 29 H 0.07 1.37 5.63 -2.39 -0.01 1.36 16 30 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.11 1.30 8.07 -2.39 -0.02 1.28 16 34 H 0.10 1.45 7.10 -2.39 -0.02 1.43 16 35 H 0.06 1.76 6.58 -2.38 -0.02 1.75 16 36 H 0.07 1.79 6.18 -2.38 -0.01 1.78 16 37 H 0.43 7.62 8.65 -96.75 -0.84 6.78 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 2.47 6.43 -2.39 -0.02 2.46 16 40 H 0.08 2.14 7.79 -2.39 -0.02 2.12 16 41 H 0.04 1.76 6.66 -2.39 -0.02 1.74 16 42 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 43 H 0.04 1.44 6.18 -2.39 -0.01 1.43 16 44 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -72.19 365.85 -1.11 -73.30 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.19 Total: 19.74 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 5.84 Total: -15.45 kcal Atomic # 7 Polarization: -131.17 SS G_CDS: -4.55 Total: -135.71 kcal Atomic # 8 Polarization: -85.85 SS G_CDS: -4.27 Total: -90.13 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 103.36 SS G_CDS: -0.34 Total: 103.02 kcal Total: -72.19 -1.11 -73.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282247770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.358 kcal (2) G-P(sol) polarization free energy of solvation -72.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds