Wall clock time and date at job start Tue Mar 31 2020 14:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34147 * 125.65578 * 2 1 4 4 H 0.97002 * 125.36981 * 359.95957 * 3 2 1 5 5 C 1.37992 * 109.24982 * 179.97438 * 3 2 1 6 6 C 1.41543 * 125.98713 * 180.02562 * 5 3 2 7 7 O 1.21412 * 120.00149 * 179.97438 * 6 5 3 8 8 C 1.37843 * 108.02544 * 359.75256 * 5 3 2 9 9 C 1.38334 * 125.65415 * 179.97438 * 2 1 3 10 10 C 1.47425 * 126.39651 * 359.97438 * 9 2 1 11 11 O 1.21601 * 120.00175 * 8.23492 * 10 9 2 12 12 N 1.34778 * 119.99836 * 188.23401 * 10 9 2 13 13 C 1.46498 * 120.00120 * 6.20384 * 12 10 9 14 14 C 1.50700 * 109.46846 * 271.17271 * 13 12 10 15 15 H 1.07991 * 120.00411 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99375 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00636 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99772 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47257 * 89.99784 * 18 16 14 20 20 H 1.48494 * 109.47154 * 210.00192 * 18 16 14 21 21 H 1.48503 * 109.46929 * 330.00334 * 18 16 14 22 22 C 1.46499 * 119.99559 * 186.20107 * 12 10 9 23 23 C 1.50703 * 109.47140 * 269.99916 * 22 12 10 24 24 C 1.38228 * 119.61611 * 94.98259 * 23 22 12 25 25 C 1.38629 * 119.15943 * 179.79025 * 24 23 22 26 26 C 1.38669 * 118.42012 * 0.47303 * 25 24 23 27 27 C 1.38178 * 119.16428 * 359.50286 * 26 25 24 28 28 N 1.31854 * 119.62034 * 275.00010 * 23 22 12 29 29 H 1.09002 * 109.47096 * 270.02361 * 1 2 3 30 30 H 1.08995 * 109.46770 * 30.02621 * 1 2 3 31 31 H 1.08993 * 109.46998 * 150.02539 * 1 2 3 32 32 H 1.08005 * 119.99968 * 359.97379 * 6 5 3 33 33 H 1.08001 * 126.58657 * 180.23989 * 8 5 3 34 34 H 1.08994 * 109.47279 * 31.17440 * 13 12 10 35 35 H 1.09005 * 109.47230 * 151.17465 * 13 12 10 36 36 H 0.96996 * 119.99888 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47275 * 150.00483 * 22 12 10 38 38 H 1.08996 * 109.47247 * 30.00362 * 22 12 10 39 39 H 1.08006 * 120.41952 * 0.02562 * 24 23 22 40 40 H 1.08003 * 120.78890 * 180.23124 * 25 24 23 41 41 H 1.08002 * 120.41743 * 179.78396 * 26 25 24 42 42 H 1.07999 * 119.61832 * 180.25501 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2890 1.0900 0.0000 4 1 1.9736 2.0073 -0.0006 5 6 3.6127 0.7002 0.0006 6 6 4.7340 1.5640 0.0013 7 8 5.8566 1.1015 0.0022 8 6 3.6517 -0.6776 0.0066 9 6 2.3134 -1.1240 0.0005 10 6 1.8590 -2.5265 0.0017 11 8 0.6801 -2.7839 -0.1486 12 7 2.7504 -3.5235 0.1692 13 6 4.1466 -3.2123 0.4853 14 6 4.9242 -3.0374 -0.7936 15 1 4.4280 -3.1467 -1.7466 16 6 6.2693 -2.7379 -0.7470 17 7 6.8738 -2.6053 0.4134 18 14 7.2332 -2.5205 -2.3324 19 1 7.1842 -1.0963 -2.7501 20 1 8.6453 -2.9235 -2.1124 21 1 6.6360 -3.3687 -3.3950 22 6 2.3230 -4.9183 0.0352 23 6 1.8713 -5.4363 1.3764 24 6 0.5294 -5.3993 1.7064 25 6 0.1239 -5.8823 2.9409 26 6 1.0885 -6.3776 3.8051 27 6 2.4114 -6.3828 3.4060 28 7 2.7606 -5.9193 2.2217 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 4.5911 2.6345 0.0010 33 1 4.5367 -1.2966 0.0122 34 1 4.1910 -2.2912 1.0664 35 1 4.5786 -4.0284 1.0645 36 1 7.8201 -2.3950 0.4461 37 1 3.1569 -5.5209 -0.3248 38 1 1.4979 -4.9789 -0.6744 39 1 -0.1943 -5.0026 1.0097 40 1 -0.9182 -5.8696 3.2243 41 1 0.8089 -6.7587 4.7762 42 1 3.1683 -6.7707 4.0716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283184955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:30 Heat of formation + Delta-G solvation = 33.514731 kcal Electronic energy + Delta-G solvation = -28084.010484 eV Core-core repulsion = 24224.089067 eV Total energy + Delta-G solvation = -3859.921418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.12725 -39.92471 -38.48067 -37.84586 -35.20398 -33.03908 -32.12343 -31.65153 -31.33362 -30.52926 -27.57700 -27.21429 -26.14112 -23.45428 -23.20090 -22.55650 -22.15102 -20.77066 -19.67164 -18.03518 -17.25782 -16.79182 -16.27293 -15.98575 -15.48516 -15.24689 -15.17362 -14.80228 -14.71211 -14.22327 -14.02702 -13.83213 -13.50237 -13.31727 -13.10334 -12.98808 -12.56273 -12.51782 -12.43577 -12.20611 -12.06535 -11.58383 -11.46895 -11.29024 -10.86113 -10.78701 -10.17228 -9.89417 -9.72943 -9.59123 -9.40259 -9.14519 -9.02090 -8.66487 -8.58737 -8.29830 -7.81021 -7.54085 -6.08545 -4.15004 1.36428 1.56832 1.57667 2.42557 3.34094 3.36277 3.43395 3.43755 3.64120 3.87751 4.23289 4.36993 4.47106 4.68691 4.79283 5.02226 5.08137 5.10370 5.25628 5.30294 5.31534 5.44497 5.62907 5.69768 5.74335 5.85092 5.95186 6.00052 6.08150 6.20636 6.27920 6.40917 6.45879 6.56198 6.80595 6.85710 6.98469 7.15708 7.35828 7.64283 7.65289 7.71060 7.86924 8.06413 8.13670 8.34562 8.44774 8.88915 9.11262 9.49603 10.96142 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.005396 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.987603 B = 5187.354886 C = 6970.640668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.124 3.876 3 N -0.529 5.529 4 H 0.412 0.588 5 C -0.158 4.158 6 C 0.395 3.605 7 O -0.448 6.448 8 C -0.037 4.037 9 C -0.238 4.238 10 C 0.591 3.409 11 O -0.582 6.582 12 N -0.581 5.581 13 C 0.223 3.777 14 C -0.544 4.544 15 H 0.063 0.937 16 C 0.073 3.927 17 N -0.874 5.874 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.170 3.830 23 C 0.121 3.879 24 C -0.149 4.149 25 C -0.085 4.085 26 C -0.183 4.183 27 C 0.094 3.906 28 N -0.464 5.464 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.229 0.771 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.268 0.732 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.969 2.428 3.608 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.000 4.000 3 N -0.126 5.126 4 H 0.249 0.751 5 C -0.263 4.263 6 C 0.256 3.744 7 O -0.321 6.321 8 C -0.060 4.060 9 C -0.248 4.248 10 C 0.382 3.618 11 O -0.465 6.465 12 N -0.310 5.310 13 C 0.103 3.897 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.132 4.132 17 N -0.510 5.510 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.046 3.954 23 C -0.018 4.018 24 C -0.169 4.169 25 C -0.111 4.111 26 C -0.203 4.203 27 C -0.064 4.064 28 N -0.173 5.173 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.245 0.755 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.157 0.843 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.788 2.237 3.375 12.464 hybrid contribution -0.517 0.793 -0.394 1.025 sum -12.305 3.030 2.981 13.019 Atomic orbital electron populations 1.20615 0.87087 1.04303 1.03199 1.20820 0.93499 0.85863 0.99866 1.41625 1.06038 1.07871 1.57040 0.75090 1.20619 0.84353 0.96721 1.24614 1.21316 0.86855 0.93008 0.73268 1.90695 1.25347 1.80387 1.35678 1.24494 1.00384 0.92545 0.88604 1.19452 0.93655 0.92347 1.19317 1.17360 0.84602 0.84322 0.75475 1.90567 1.16992 1.84871 1.54092 1.47925 1.11917 1.03377 1.67761 1.20048 0.74608 0.98463 0.96532 1.21394 0.93957 1.49847 0.93041 0.91852 1.24896 0.97303 0.94562 0.96454 1.69892 1.11474 1.45785 1.23893 0.86555 0.79197 0.78772 0.83461 1.20160 1.21054 1.19909 1.20144 1.01197 0.83456 0.90593 1.21912 0.89474 0.93571 0.96836 1.22129 0.97485 0.99657 0.97675 1.21534 0.99708 0.96149 0.93739 1.22072 0.94779 1.02681 1.00755 1.22750 0.94684 0.95822 0.93117 1.67597 1.38188 1.08466 1.03078 0.90692 0.92118 0.87490 0.90603 0.75546 0.93415 0.93577 0.92211 0.88520 0.89378 0.84302 0.85398 0.85421 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.96 36.01 0.36 -0.83 16 2 C 0.12 2.01 7.19 -81.54 -0.59 1.42 16 3 N -0.53 -7.42 6.02 -6.62 -0.04 -7.46 16 4 H 0.41 3.80 8.96 -40.82 -0.37 3.43 16 5 C -0.16 -2.88 6.89 -83.98 -0.58 -3.46 16 6 C 0.40 6.81 11.53 31.99 0.37 7.18 16 7 O -0.45 -10.08 17.61 5.44 0.10 -9.99 16 8 C -0.04 -0.82 7.82 -38.65 -0.30 -1.12 16 9 C -0.24 -4.88 5.93 -105.04 -0.62 -5.51 16 10 C 0.59 12.67 7.64 -12.52 -0.10 12.57 16 11 O -0.58 -12.11 14.06 5.28 0.07 -12.03 16 12 N -0.58 -12.69 2.44 -177.71 -0.43 -13.13 16 13 C 0.22 5.52 4.65 -5.19 -0.02 5.49 16 14 C -0.54 -14.30 7.07 -34.44 -0.24 -14.54 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.07 1.98 4.82 -17.82 -0.09 1.90 16 17 N -0.87 -24.69 13.29 55.43 0.74 -23.95 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.17 3.27 5.66 -5.19 -0.03 3.24 16 23 C 0.12 2.19 6.36 -82.58 -0.53 1.66 16 24 C -0.15 -2.34 9.67 -39.44 -0.38 -2.72 16 25 C -0.09 -1.12 10.18 -39.28 -0.40 -1.52 16 26 C -0.18 -2.32 10.11 -39.44 -0.40 -2.72 16 27 C 0.09 1.40 11.18 -17.55 -0.20 1.21 16 28 N -0.46 -8.59 10.27 -9.47 -0.10 -8.69 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.11 1.56 6.30 -51.93 -0.33 1.23 16 32 H 0.08 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.23 5.84 2.83 -52.49 -0.15 5.69 16 34 H 0.05 1.26 4.93 -51.93 -0.26 1.01 16 35 H 0.05 1.23 8.06 -51.93 -0.42 0.81 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.10 1.89 8.07 -51.93 -0.42 1.47 16 38 H 0.09 1.56 7.41 -51.93 -0.39 1.18 16 39 H 0.14 2.12 7.77 -52.48 -0.41 1.71 16 40 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -33.15 360.17 -7.81 -40.96 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.81 Total: 10.01 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -3.74 Total: 2.27 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.17 Total: -53.23 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.17 Total: -22.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.15 -7.81 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283184955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.478 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds