Wall clock time and date at job start Tue Mar 31 2020 14:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34147 * 125.65578 * 2 1 4 4 H 0.97002 * 125.36981 * 359.95957 * 3 2 1 5 5 C 1.37992 * 109.24982 * 179.97438 * 3 2 1 6 6 C 1.41543 * 125.98713 * 180.02562 * 5 3 2 7 7 O 1.21412 * 120.00149 * 179.97438 * 6 5 3 8 8 C 1.37843 * 108.02544 * 359.75256 * 5 3 2 9 9 C 1.38334 * 125.65415 * 179.97438 * 2 1 3 10 10 C 1.47425 * 126.39651 * 359.97438 * 9 2 1 11 11 O 1.21601 * 120.00175 * 8.23492 * 10 9 2 12 12 N 1.34778 * 119.99836 * 188.23401 * 10 9 2 13 13 C 1.46498 * 120.00120 * 6.20384 * 12 10 9 14 14 C 1.50700 * 109.46846 * 271.17271 * 13 12 10 15 15 H 1.07991 * 120.00411 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99375 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00636 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99772 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47257 * 89.99784 * 18 16 14 20 20 H 1.48494 * 109.47154 * 210.00192 * 18 16 14 21 21 H 1.48503 * 109.46929 * 330.00334 * 18 16 14 22 22 C 1.46499 * 119.99559 * 186.20107 * 12 10 9 23 23 C 1.50703 * 109.47140 * 269.99916 * 22 12 10 24 24 C 1.38228 * 119.61611 * 94.98259 * 23 22 12 25 25 C 1.38629 * 119.15943 * 179.79025 * 24 23 22 26 26 C 1.38669 * 118.42012 * 0.47303 * 25 24 23 27 27 C 1.38178 * 119.16428 * 359.50286 * 26 25 24 28 28 N 1.31854 * 119.62034 * 275.00010 * 23 22 12 29 29 H 1.09002 * 109.47096 * 270.02361 * 1 2 3 30 30 H 1.08995 * 109.46770 * 30.02621 * 1 2 3 31 31 H 1.08993 * 109.46998 * 150.02539 * 1 2 3 32 32 H 1.08005 * 119.99968 * 359.97379 * 6 5 3 33 33 H 1.08001 * 126.58657 * 180.23989 * 8 5 3 34 34 H 1.08994 * 109.47279 * 31.17440 * 13 12 10 35 35 H 1.09005 * 109.47230 * 151.17465 * 13 12 10 36 36 H 0.96996 * 119.99888 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47275 * 150.00483 * 22 12 10 38 38 H 1.08996 * 109.47247 * 30.00362 * 22 12 10 39 39 H 1.08006 * 120.41952 * 0.02562 * 24 23 22 40 40 H 1.08003 * 120.78890 * 180.23124 * 25 24 23 41 41 H 1.08002 * 120.41743 * 179.78396 * 26 25 24 42 42 H 1.07999 * 119.61832 * 180.25501 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2890 1.0900 0.0000 4 1 1.9736 2.0073 -0.0006 5 6 3.6127 0.7002 0.0006 6 6 4.7340 1.5640 0.0013 7 8 5.8566 1.1015 0.0022 8 6 3.6517 -0.6776 0.0066 9 6 2.3134 -1.1240 0.0005 10 6 1.8590 -2.5265 0.0017 11 8 0.6801 -2.7839 -0.1486 12 7 2.7504 -3.5235 0.1692 13 6 4.1466 -3.2123 0.4853 14 6 4.9242 -3.0374 -0.7936 15 1 4.4280 -3.1467 -1.7466 16 6 6.2693 -2.7379 -0.7470 17 7 6.8738 -2.6053 0.4134 18 14 7.2332 -2.5205 -2.3324 19 1 7.1842 -1.0963 -2.7501 20 1 8.6453 -2.9235 -2.1124 21 1 6.6360 -3.3687 -3.3950 22 6 2.3230 -4.9183 0.0352 23 6 1.8713 -5.4363 1.3764 24 6 0.5294 -5.3993 1.7064 25 6 0.1239 -5.8823 2.9409 26 6 1.0885 -6.3776 3.8051 27 6 2.4114 -6.3828 3.4060 28 7 2.7606 -5.9193 2.2217 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 4.5911 2.6345 0.0010 33 1 4.5367 -1.2966 0.0122 34 1 4.1910 -2.2912 1.0664 35 1 4.5786 -4.0284 1.0645 36 1 7.8201 -2.3950 0.4461 37 1 3.1569 -5.5209 -0.3248 38 1 1.4979 -4.9789 -0.6744 39 1 -0.1943 -5.0026 1.0097 40 1 -0.9182 -5.8696 3.2243 41 1 0.8089 -6.7587 4.7762 42 1 3.1683 -6.7707 4.0716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283184955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:29 Heat of formation + Delta-G solvation = 10.959441 kcal Electronic energy + Delta-G solvation = -28084.988555 eV Core-core repulsion = 24224.089067 eV Total energy + Delta-G solvation = -3860.899488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.53751 -41.18613 -40.02244 -39.35479 -36.93847 -34.83868 -33.40998 -33.12409 -32.58966 -31.89322 -29.44566 -28.49398 -27.63387 -25.21287 -24.43103 -24.16855 -23.46070 -22.15302 -21.10124 -19.57568 -18.74115 -18.54570 -17.69065 -17.32137 -17.06080 -16.75036 -16.49230 -16.33526 -16.14948 -15.92343 -15.43422 -15.32017 -15.00415 -14.70920 -14.53096 -14.27244 -14.11934 -14.02964 -13.83950 -13.68512 -13.20949 -13.04515 -12.94865 -12.74296 -12.62280 -12.57300 -12.13254 -11.72878 -11.71311 -10.90949 -10.76744 -10.65355 -10.57385 -10.33295 -9.92915 -9.86558 -9.45494 -9.03269 -8.17922 -6.29430 0.18062 0.19471 0.44499 0.90530 1.37309 1.41477 1.48572 2.09423 2.20321 2.35053 2.47790 2.68066 3.05634 3.14063 3.44176 3.58060 3.84364 3.94391 4.05219 4.10439 4.19830 4.26155 4.30717 4.53676 4.56632 4.62683 4.65084 4.79640 4.81041 4.91928 4.94490 5.08645 5.20899 5.26678 5.28484 5.31652 5.38831 5.65989 5.74575 5.85377 5.89679 5.96612 6.09205 6.58910 6.61232 6.73200 6.84992 7.17452 7.34608 7.47197 8.85786 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.005396 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.987603 B = 5187.354886 C = 6970.640668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.151 3.849 3 N -0.493 5.493 4 H 0.442 0.558 5 C -0.157 4.157 6 C 0.402 3.598 7 O -0.509 6.509 8 C -0.086 4.086 9 C -0.281 4.281 10 C 0.584 3.416 11 O -0.580 6.580 12 N -0.589 5.589 13 C 0.251 3.749 14 C -0.537 4.537 15 H 0.052 0.948 16 C 0.034 3.966 17 N -0.904 5.904 18 Si 0.944 3.056 19 H -0.281 1.281 20 H -0.279 1.279 21 H -0.266 1.266 22 C 0.171 3.829 23 C 0.094 3.906 24 C -0.155 4.155 25 C -0.079 4.079 26 C -0.165 4.165 27 C 0.076 3.924 28 N -0.509 5.509 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.189 0.811 34 H 0.031 0.969 35 H 0.014 0.986 36 H 0.266 0.734 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.055 4.304 4.290 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.023 3.977 3 N -0.091 5.091 4 H 0.285 0.715 5 C -0.264 4.264 6 C 0.266 3.734 7 O -0.386 6.386 8 C -0.110 4.110 9 C -0.289 4.289 10 C 0.377 3.623 11 O -0.464 6.464 12 N -0.318 5.318 13 C 0.130 3.870 14 C -0.576 4.576 15 H 0.070 0.930 16 C -0.169 4.169 17 N -0.542 5.542 18 Si 0.770 3.230 19 H -0.208 1.208 20 H -0.204 1.204 21 H -0.190 1.190 22 C 0.047 3.953 23 C -0.044 4.044 24 C -0.176 4.176 25 C -0.105 4.105 26 C -0.185 4.185 27 C -0.081 4.081 28 N -0.219 5.219 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.168 0.832 33 H 0.205 0.795 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.157 0.843 40 H 0.185 0.815 41 H 0.189 0.811 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -14.919 4.143 4.042 16.002 hybrid contribution 0.300 0.229 -0.521 0.643 sum -14.619 4.371 3.521 15.659 Atomic orbital electron populations 1.20712 0.83843 1.05514 1.04610 1.21233 0.95045 0.84828 0.96640 1.41421 1.04120 1.09041 1.54544 0.71535 1.20680 0.86466 0.95564 1.23646 1.22292 0.85082 0.95618 0.70411 1.90690 1.27609 1.81791 1.38459 1.24125 1.00077 0.94778 0.92024 1.19599 0.93999 0.93099 1.22251 1.17624 0.84613 0.84834 0.75279 1.90539 1.16501 1.85087 1.54309 1.47880 1.10857 1.04755 1.68280 1.19477 0.76159 0.96139 0.95197 1.21428 0.94154 1.48994 0.92987 0.92974 1.25499 0.98161 0.94439 0.98773 1.69991 1.11429 1.47256 1.25530 0.85754 0.78327 0.78248 0.80687 1.20752 1.20378 1.19011 1.20150 1.00650 0.82113 0.92399 1.21648 0.90686 0.95638 0.96396 1.22171 0.96205 1.00100 0.99118 1.21992 1.01791 0.94388 0.92291 1.22506 0.93355 1.00531 1.02092 1.23241 0.96804 0.95735 0.92323 1.67482 1.39547 1.10032 1.04839 0.88957 0.87698 0.89431 0.83232 0.79463 0.95148 0.96769 0.92494 0.90398 0.88486 0.84265 0.81467 0.81120 0.81198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.91 9.96 71.24 0.71 -1.20 16 2 C 0.15 4.51 7.19 42.23 0.30 4.81 16 3 N -0.49 -12.13 6.02 -174.84 -1.05 -13.19 16 4 H 0.44 5.74 8.96 -92.71 -0.83 4.91 16 5 C -0.16 -5.54 6.89 38.89 0.27 -5.28 16 6 C 0.40 13.18 11.53 68.64 0.79 13.97 16 7 O -0.51 -23.29 17.61 -3.44 -0.06 -23.35 16 8 C -0.09 -3.94 7.82 22.87 0.18 -3.77 16 9 C -0.28 -11.67 5.93 -20.14 -0.12 -11.78 16 10 C 0.58 25.89 7.64 86.66 0.66 26.55 16 11 O -0.58 -24.37 14.06 -4.04 -0.06 -24.42 16 12 N -0.59 -27.43 2.44 -834.40 -2.04 -29.47 16 13 C 0.25 13.45 4.65 85.63 0.40 13.85 16 14 C -0.54 -30.14 7.07 25.60 0.18 -29.96 16 15 H 0.05 2.97 7.81 -2.92 -0.02 2.95 16 16 C 0.03 1.91 4.82 84.65 0.41 2.32 16 17 N -0.90 -54.13 13.29 21.45 0.28 -53.84 16 18 Si 0.94 46.11 29.54 68.60 2.03 48.13 16 19 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 C 0.17 7.04 5.66 85.63 0.48 7.52 16 23 C 0.09 3.56 6.36 42.55 0.27 3.83 16 24 C -0.16 -4.82 9.67 22.36 0.22 -4.61 16 25 C -0.08 -1.86 10.18 22.47 0.23 -1.63 16 26 C -0.17 -3.73 10.11 22.36 0.23 -3.51 16 27 C 0.08 2.25 11.18 84.67 0.95 3.20 16 28 N -0.51 -19.72 10.27 -183.89 -1.89 -21.61 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 2.32 6.30 -2.39 -0.02 2.30 16 32 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.19 10.30 2.83 -2.91 -0.01 10.29 16 34 H 0.03 1.77 4.93 -2.39 -0.01 1.75 16 35 H 0.01 0.83 8.06 -2.38 -0.02 0.81 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.08 3.37 8.07 -2.39 -0.02 3.36 16 38 H 0.10 3.68 7.41 -2.39 -0.02 3.66 16 39 H 0.14 4.21 7.77 -2.91 -0.02 4.18 16 40 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 41 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 42 H 0.17 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -80.97 360.17 3.62 -77.35 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.25 Total: 26.07 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 6.15 Total: 14.33 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -4.69 Total: -118.11 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -0.12 Total: -47.77 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -80.97 3.62 -77.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283184955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.309 kcal (2) G-P(sol) polarization free energy of solvation -80.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds