Wall clock time and date at job start Tue Mar 31 2020 15:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29935 * 126.29039 * 2 1 4 4 O 1.21303 * 110.25284 * 180.02562 * 3 2 1 5 5 C 1.33644 * 109.80920 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.54631 * 179.97438 * 5 4 3 7 7 H 1.09006 * 110.40811 * 195.86351 * 6 5 4 8 8 C 1.54906 * 110.37154 * 73.57450 * 6 5 4 9 9 C 1.55155 * 101.61608 * 204.16900 * 8 6 5 10 10 C 1.54321 * 102.94429 * 35.47668 * 9 8 6 11 11 N 1.47020 * 107.27055 * 337.81074 * 10 9 8 12 12 C 1.34777 * 125.64808 * 178.90111 * 11 10 9 13 13 O 1.21586 * 120.00184 * 174.75042 * 12 11 10 14 14 C 1.47645 * 120.00042 * 354.74869 * 12 11 10 15 15 C 1.40017 * 119.89321 * 8.08186 * 14 12 11 16 16 C 1.36315 * 120.10694 * 179.71946 * 15 14 12 17 17 C 1.40888 * 119.88970 * 0.54250 * 16 15 14 18 18 C 1.41105 * 120.10601 * 179.74773 * 17 16 15 19 19 H 1.08001 * 119.99998 * 214.78873 * 18 17 16 20 20 C 1.40226 * 119.99971 * 34.78308 * 18 17 16 21 21 N 1.30644 * 119.99945 * 355.51331 * 20 18 17 22 22 Si 1.86804 * 120.00032 * 175.51734 * 20 18 17 23 23 H 1.48497 * 109.46910 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47158 * 120.00103 * 22 20 18 25 25 H 1.48498 * 109.46771 * 240.00103 * 22 20 18 26 26 C 1.40898 * 119.79314 * 359.72693 * 17 16 15 27 27 C 1.36317 * 119.89165 * 359.97438 * 26 17 16 28 28 N 1.31125 * 106.89657 * 0.22588 * 5 4 3 29 29 H 1.08999 * 109.46840 * 89.96833 * 1 2 3 30 30 H 1.09000 * 109.47379 * 209.97492 * 1 2 3 31 31 H 1.09001 * 109.46595 * 329.97236 * 1 2 3 32 32 H 1.08993 * 111.00838 * 86.06990 * 8 6 5 33 33 H 1.09010 * 110.99837 * 322.26057 * 8 6 5 34 34 H 1.09001 * 110.71747 * 153.84278 * 9 8 6 35 35 H 1.09002 * 110.71457 * 277.11395 * 9 8 6 36 36 H 1.09003 * 109.88137 * 97.22483 * 10 9 8 37 37 H 1.08992 * 109.88225 * 218.39016 * 10 9 8 38 38 H 1.07999 * 119.94302 * 359.96831 * 15 14 12 39 39 H 1.07997 * 120.05867 * 180.27365 * 16 15 14 40 40 H 0.97002 * 119.99835 * 180.02562 * 21 20 18 41 41 H 1.07994 * 120.05041 * 180.02562 * 26 17 16 42 42 H 1.07990 * 119.94252 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0473 0.0000 4 8 3.4419 0.7122 -0.0005 5 6 3.5298 -0.6213 -0.0015 6 6 4.7970 -1.4372 -0.0029 7 1 4.5844 -2.4690 -0.2827 8 6 5.4736 -1.3847 1.3896 9 6 6.9517 -1.6903 1.0304 10 6 7.1255 -0.9970 -0.3373 11 7 5.7860 -0.8492 -0.9251 12 6 5.5077 -0.2705 -2.1100 13 8 4.3718 -0.2878 -2.5432 14 6 6.5823 0.3844 -2.8822 15 6 7.9143 0.2586 -2.4696 16 6 8.9104 0.8567 -3.1826 17 6 8.5967 1.6119 -4.3298 18 6 9.6236 2.2374 -5.0681 19 1 9.4451 3.1928 -5.5391 20 6 10.8760 1.6186 -5.1903 21 7 11.1206 0.5069 -4.5491 22 14 12.1947 2.3839 -6.2697 23 1 11.6706 3.6309 -6.8824 24 1 13.3877 2.7008 -5.4442 25 1 12.5737 1.4279 -7.3409 26 6 7.2542 1.7404 -4.7378 27 6 6.2655 1.1335 -4.0219 28 7 2.3030 -1.0842 -0.0064 29 1 -0.3633 0.0006 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3632 0.8898 0.5143 32 1 5.0662 -2.1492 2.0511 33 1 5.3762 -0.3942 1.8342 34 1 7.6256 -1.2582 1.7702 35 1 7.1127 -2.7647 0.9414 36 1 7.5806 -0.0160 -0.2005 37 1 7.7498 -1.6102 -0.9870 38 1 8.1533 -0.3166 -1.5874 39 1 9.9380 0.7554 -2.8661 40 1 11.9871 0.0790 -4.6333 41 1 7.0090 2.3180 -5.6167 42 1 5.2364 1.2311 -4.3341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286529651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:48 Heat of formation + Delta-G solvation = 77.537401 kcal Electronic energy + Delta-G solvation = -27578.225022 eV Core-core repulsion = 23720.212571 eV Total energy + Delta-G solvation = -3858.012451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.35678 -40.08113 -37.66814 -36.79928 -35.87385 -33.91833 -33.14266 -31.78784 -30.32925 -29.58775 -29.24639 -28.62325 -26.03767 -24.40843 -23.45316 -22.33566 -21.92252 -20.94792 -20.44776 -19.17800 -17.84708 -17.48116 -17.25444 -16.67734 -16.38816 -15.56814 -15.22303 -14.36746 -14.26032 -14.11224 -13.95890 -13.60359 -13.53426 -13.21919 -13.06558 -12.93685 -12.74468 -12.46924 -12.26346 -12.09849 -12.05212 -11.85297 -11.53329 -11.26461 -11.22355 -11.05517 -10.99628 -10.88444 -10.74447 -10.60955 -10.01305 -9.79882 -9.49926 -9.32958 -9.03682 -8.55507 -7.73265 -7.43951 -6.89035 -4.64680 1.31895 2.13137 2.34275 2.88257 2.92934 2.97121 2.99639 3.02643 3.12847 3.70870 3.78797 3.84657 4.18647 4.26988 4.44934 4.55442 4.75969 4.99304 5.09129 5.22753 5.31152 5.40136 5.47808 5.51590 5.52523 5.59854 5.71154 5.75460 5.78769 5.95673 6.00630 6.08795 6.12634 6.27768 6.44684 6.75753 6.86689 7.00696 7.12718 7.46347 7.54493 7.76183 7.87136 7.95773 8.08824 8.34446 8.42970 8.65836 8.74758 8.81535 9.99533 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.003073 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.843896 B = 9108.642048 C =10073.020828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.163 3.837 3 N -0.385 5.385 4 O 0.090 5.910 5 C 0.203 3.797 6 C 0.230 3.770 7 H 0.117 0.883 8 C -0.125 4.125 9 C -0.134 4.134 10 C 0.098 3.902 11 N -0.623 5.623 12 C 0.588 3.412 13 O -0.562 6.562 14 C -0.265 4.265 15 C -0.105 4.105 16 C -0.167 4.167 17 C 0.126 3.874 18 C -0.448 4.448 19 H 0.082 0.918 20 C 0.070 3.930 21 N -0.792 5.792 22 Si 0.919 3.081 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.227 4.227 27 C -0.029 4.029 28 N -0.483 5.483 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.282 0.718 41 H 0.099 0.901 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -5.112 12.295 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.110 4.110 3 N -0.094 5.094 4 O 0.032 5.968 5 C -0.018 4.018 6 C 0.124 3.876 7 H 0.134 0.866 8 C -0.164 4.164 9 C -0.171 4.171 10 C -0.025 4.025 11 N -0.360 5.360 12 C 0.386 3.614 13 O -0.442 6.442 14 C -0.270 4.270 15 C -0.123 4.123 16 C -0.186 4.186 17 C 0.123 3.877 18 C -0.477 4.477 19 H 0.100 0.900 20 C -0.148 4.148 21 N -0.417 5.417 22 Si 0.743 3.257 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.246 4.246 27 C -0.048 4.048 28 N -0.218 5.218 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.029 -4.729 11.979 14.672 hybrid contribution 0.761 0.166 -0.778 1.101 sum -6.268 -4.563 11.201 13.622 Atomic orbital electron populations 1.20075 0.83240 1.04171 1.04169 1.25771 1.00360 0.83718 1.01153 1.74559 0.89493 1.24094 1.21247 1.85269 1.22066 1.24489 1.65011 1.28490 0.96441 0.82344 0.94531 1.20292 0.81087 0.94409 0.91853 0.86598 1.22892 0.95758 1.03955 0.93838 1.22784 0.95661 1.01787 0.96913 1.22603 0.84686 1.01631 0.93540 1.48547 1.06765 1.61375 1.19351 1.18546 0.88826 0.75958 0.78056 1.90684 1.23456 1.61256 1.68779 1.18794 0.91997 1.13433 1.02746 1.21883 0.92175 0.98573 0.99657 1.21314 0.98988 1.02687 0.95645 1.17908 0.91477 0.88879 0.89469 1.19811 0.95071 1.05638 1.27228 0.89995 1.26038 0.99138 0.94305 0.95321 1.69677 1.23424 1.14726 1.33864 0.86069 0.79645 0.80126 0.79820 1.18314 1.19647 1.19689 1.20853 0.93516 1.08280 1.01993 1.20360 0.97826 0.94024 0.92634 1.71750 0.99420 1.29545 1.21099 0.89510 0.89290 0.89768 0.88800 0.89774 0.89114 0.89931 0.89495 0.89514 0.85491 0.85057 0.90623 0.88288 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.51 36.01 0.38 -0.25 16 2 C 0.16 2.61 8.22 -156.38 -1.28 1.32 16 3 N -0.39 -6.99 12.16 30.90 0.38 -6.61 16 4 O 0.09 1.67 10.88 14.49 0.16 1.82 16 5 C 0.20 3.38 5.52 -13.06 -0.07 3.31 16 6 C 0.23 3.14 3.68 -67.55 -0.25 2.89 16 7 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 8 C -0.13 -1.15 6.49 -24.59 -0.16 -1.31 16 9 C -0.13 -1.08 6.95 -24.90 -0.17 -1.26 16 10 C 0.10 1.21 4.86 -3.07 -0.01 1.19 16 11 N -0.62 -10.11 3.24 -170.67 -0.55 -10.66 16 12 C 0.59 12.44 7.38 -12.42 -0.09 12.35 16 13 O -0.56 -13.51 15.02 1.68 0.03 -13.49 16 14 C -0.27 -5.99 5.89 -104.73 -0.62 -6.61 16 15 C -0.10 -2.22 8.51 -39.61 -0.34 -2.56 16 16 C -0.17 -3.98 8.61 -39.27 -0.34 -4.31 16 17 C 0.13 3.17 5.55 -106.80 -0.59 2.58 16 18 C -0.45 -11.15 9.03 -37.75 -0.34 -11.49 16 19 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 20 C 0.07 1.64 5.42 -17.31 -0.09 1.54 16 21 N -0.79 -18.79 10.59 55.56 0.59 -18.20 16 22 Si 0.92 17.52 29.56 -169.99 -5.03 12.50 16 23 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 24 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 25 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 26 C -0.23 -5.50 9.73 -39.27 -0.38 -5.88 16 27 C -0.03 -0.69 9.52 -39.61 -0.38 -1.07 16 28 N -0.48 -8.10 11.55 -9.87 -0.11 -8.22 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.80 8.05 -51.92 -0.42 0.38 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.12 6.66 -51.93 -0.35 0.77 16 37 H 0.09 1.08 6.79 -51.93 -0.35 0.73 16 38 H 0.13 2.19 2.73 -59.21 -0.16 2.03 16 39 H 0.13 3.18 6.13 -52.49 -0.32 2.85 16 40 H 0.28 6.06 8.29 -40.82 -0.34 5.72 16 41 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.10 2.31 7.65 -52.49 -0.40 1.91 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -31.65 349.41 -8.96 -40.60 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.93 Total: 6.54 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -4.75 Total: -9.54 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.30 Total: -43.70 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.18 Total: -11.66 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.65 -8.96 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286529651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.140 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds