Wall clock time and date at job start Tue Mar 31 2020 15:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29935 * 126.29039 * 2 1 4 4 O 1.21303 * 110.25284 * 180.02562 * 3 2 1 5 5 C 1.33644 * 109.80920 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.54631 * 179.97438 * 5 4 3 7 7 H 1.09006 * 110.40811 * 195.86351 * 6 5 4 8 8 C 1.54906 * 110.37154 * 73.57450 * 6 5 4 9 9 C 1.55155 * 101.61608 * 204.16900 * 8 6 5 10 10 C 1.54321 * 102.94429 * 35.47668 * 9 8 6 11 11 N 1.47020 * 107.27055 * 337.81074 * 10 9 8 12 12 C 1.34777 * 125.64808 * 178.90111 * 11 10 9 13 13 O 1.21586 * 120.00184 * 174.75042 * 12 11 10 14 14 C 1.47645 * 120.00042 * 354.74869 * 12 11 10 15 15 C 1.40017 * 119.89321 * 8.08186 * 14 12 11 16 16 C 1.36315 * 120.10694 * 179.71946 * 15 14 12 17 17 C 1.40888 * 119.88970 * 0.54250 * 16 15 14 18 18 C 1.41105 * 120.10601 * 179.74773 * 17 16 15 19 19 H 1.08001 * 119.99998 * 214.78873 * 18 17 16 20 20 C 1.40226 * 119.99971 * 34.78308 * 18 17 16 21 21 N 1.30644 * 119.99945 * 355.51331 * 20 18 17 22 22 Si 1.86804 * 120.00032 * 175.51734 * 20 18 17 23 23 H 1.48497 * 109.46910 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47158 * 120.00103 * 22 20 18 25 25 H 1.48498 * 109.46771 * 240.00103 * 22 20 18 26 26 C 1.40898 * 119.79314 * 359.72693 * 17 16 15 27 27 C 1.36317 * 119.89165 * 359.97438 * 26 17 16 28 28 N 1.31125 * 106.89657 * 0.22588 * 5 4 3 29 29 H 1.08999 * 109.46840 * 89.96833 * 1 2 3 30 30 H 1.09000 * 109.47379 * 209.97492 * 1 2 3 31 31 H 1.09001 * 109.46595 * 329.97236 * 1 2 3 32 32 H 1.08993 * 111.00838 * 86.06990 * 8 6 5 33 33 H 1.09010 * 110.99837 * 322.26057 * 8 6 5 34 34 H 1.09001 * 110.71747 * 153.84278 * 9 8 6 35 35 H 1.09002 * 110.71457 * 277.11395 * 9 8 6 36 36 H 1.09003 * 109.88137 * 97.22483 * 10 9 8 37 37 H 1.08992 * 109.88225 * 218.39016 * 10 9 8 38 38 H 1.07999 * 119.94302 * 359.96831 * 15 14 12 39 39 H 1.07997 * 120.05867 * 180.27365 * 16 15 14 40 40 H 0.97002 * 119.99835 * 180.02562 * 21 20 18 41 41 H 1.07994 * 120.05041 * 180.02562 * 26 17 16 42 42 H 1.07990 * 119.94252 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0473 0.0000 4 8 3.4419 0.7122 -0.0005 5 6 3.5298 -0.6213 -0.0015 6 6 4.7970 -1.4372 -0.0029 7 1 4.5844 -2.4690 -0.2827 8 6 5.4736 -1.3847 1.3896 9 6 6.9517 -1.6903 1.0304 10 6 7.1255 -0.9970 -0.3373 11 7 5.7860 -0.8492 -0.9251 12 6 5.5077 -0.2705 -2.1100 13 8 4.3718 -0.2878 -2.5432 14 6 6.5823 0.3844 -2.8822 15 6 7.9143 0.2586 -2.4696 16 6 8.9104 0.8567 -3.1826 17 6 8.5967 1.6119 -4.3298 18 6 9.6236 2.2374 -5.0681 19 1 9.4451 3.1928 -5.5391 20 6 10.8760 1.6186 -5.1903 21 7 11.1206 0.5069 -4.5491 22 14 12.1947 2.3839 -6.2697 23 1 11.6706 3.6309 -6.8824 24 1 13.3877 2.7008 -5.4442 25 1 12.5737 1.4279 -7.3409 26 6 7.2542 1.7404 -4.7378 27 6 6.2655 1.1335 -4.0219 28 7 2.3030 -1.0842 -0.0064 29 1 -0.3633 0.0006 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3632 0.8898 0.5143 32 1 5.0662 -2.1492 2.0511 33 1 5.3762 -0.3942 1.8342 34 1 7.6256 -1.2582 1.7702 35 1 7.1127 -2.7647 0.9414 36 1 7.5806 -0.0160 -0.2005 37 1 7.7498 -1.6102 -0.9870 38 1 8.1533 -0.3166 -1.5874 39 1 9.9380 0.7554 -2.8661 40 1 11.9871 0.0790 -4.6333 41 1 7.0090 2.3180 -5.6167 42 1 5.2364 1.2311 -4.3341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286529651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:47 Heat of formation + Delta-G solvation = 57.338849 kcal Electronic energy + Delta-G solvation = -27579.100897 eV Core-core repulsion = 23720.212571 eV Total energy + Delta-G solvation = -3858.888326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.61937 -41.46773 -39.25610 -38.37947 -37.10580 -35.66592 -34.40549 -33.06283 -31.75501 -31.39356 -30.40912 -29.78929 -27.75491 -25.68616 -24.72203 -23.70884 -23.20070 -22.53641 -21.77307 -20.61211 -19.32655 -19.09967 -18.60903 -17.88630 -17.73563 -17.24501 -16.76269 -15.92496 -15.55342 -15.32169 -15.07603 -14.96612 -14.71751 -14.56620 -14.49474 -14.28283 -13.94294 -13.83818 -13.61948 -13.47323 -13.28078 -13.10781 -12.95846 -12.84236 -12.62070 -12.38947 -12.31759 -12.16727 -12.07591 -11.74226 -11.67525 -11.22262 -11.14738 -10.96781 -10.64831 -9.89904 -9.56621 -9.28434 -8.64814 -6.52243 0.05234 0.37190 1.11631 1.12377 1.40544 1.41321 1.55024 1.68268 1.87586 2.08939 2.19895 2.65212 2.78789 3.06897 3.35781 3.58125 3.62350 3.83649 4.04468 4.12421 4.15956 4.34108 4.38802 4.46911 4.49459 4.51559 4.60111 4.73051 4.81107 4.86313 4.88547 4.96091 5.02257 5.04397 5.09269 5.15773 5.26054 5.31051 5.36476 5.61901 5.77299 5.94805 6.01784 6.24634 6.40955 6.57857 6.81167 6.89551 7.07244 7.19782 8.26612 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.003073 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.843896 B = 9108.642048 C =10073.020828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.163 3.837 3 N -0.415 5.415 4 O 0.060 5.940 5 C 0.200 3.800 6 C 0.219 3.781 7 H 0.130 0.870 8 C -0.114 4.114 9 C -0.114 4.114 10 C 0.080 3.920 11 N -0.618 5.618 12 C 0.585 3.415 13 O -0.600 6.600 14 C -0.275 4.275 15 C -0.092 4.092 16 C -0.184 4.184 17 C 0.098 3.902 18 C -0.481 4.481 19 H 0.078 0.922 20 C 0.034 3.966 21 N -0.814 5.814 22 Si 0.991 3.009 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.267 1.267 26 C -0.242 4.242 27 C -0.044 4.044 28 N -0.498 5.498 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.171 0.829 39 H 0.128 0.872 40 H 0.293 0.707 41 H 0.101 0.899 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 -6.739 14.398 16.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.110 4.110 3 N -0.129 5.129 4 O 0.008 5.992 5 C -0.021 4.021 6 C 0.114 3.886 7 H 0.147 0.853 8 C -0.152 4.152 9 C -0.151 4.151 10 C -0.041 4.041 11 N -0.353 5.353 12 C 0.382 3.618 13 O -0.483 6.483 14 C -0.279 4.279 15 C -0.110 4.110 16 C -0.204 4.204 17 C 0.095 3.905 18 C -0.510 4.510 19 H 0.096 0.904 20 C -0.182 4.182 21 N -0.439 5.439 22 Si 0.811 3.189 23 H -0.185 1.185 24 H -0.183 1.183 25 H -0.191 1.191 26 C -0.261 4.261 27 C -0.064 4.064 28 N -0.233 5.233 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.187 0.813 39 H 0.145 0.855 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.075 -6.383 14.139 16.660 hybrid contribution 0.366 0.585 -1.358 1.523 sum -5.709 -5.798 12.781 15.151 Atomic orbital electron populations 1.20353 0.79896 1.06195 1.05193 1.26721 1.02293 0.83033 0.98980 1.74547 0.89678 1.25305 1.23368 1.85216 1.22533 1.25454 1.66017 1.29165 0.97550 0.82023 0.93348 1.20891 0.79821 0.94003 0.93879 0.85267 1.22982 0.95931 1.05099 0.91223 1.22798 0.95179 1.02985 0.94180 1.22865 0.82719 1.02219 0.96248 1.48464 1.09254 1.59483 1.18069 1.18287 0.87690 0.76379 0.79490 1.90654 1.24541 1.62839 1.70305 1.19126 0.93333 1.12941 1.02521 1.22340 0.90876 0.97482 1.00288 1.21368 0.99376 1.03751 0.95884 1.18248 0.91886 0.89919 0.90418 1.20020 0.96389 1.06131 1.28483 0.90362 1.26842 1.00546 0.94546 0.96296 1.69697 1.24458 1.15332 1.34408 0.85012 0.76856 0.79007 0.77997 1.18549 1.18298 1.19145 1.20957 0.93699 1.08982 1.02509 1.20468 0.97451 0.94822 0.93636 1.71780 0.99679 1.29928 1.21908 0.88777 0.87013 0.88006 0.85404 0.90136 0.86297 0.87415 0.89889 0.89188 0.81300 0.85473 0.89576 0.88066 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.51 71.24 0.75 -0.41 16 2 C 0.16 5.14 8.22 138.47 1.14 6.27 16 3 N -0.42 -15.27 12.16 -60.34 -0.73 -16.00 16 4 O 0.06 2.28 10.88 78.28 0.85 3.13 16 5 C 0.20 6.56 5.52 88.38 0.49 7.05 16 6 C 0.22 5.55 3.68 44.71 0.16 5.72 16 7 H 0.13 2.96 8.14 -2.38 -0.02 2.94 16 8 C -0.11 -1.65 6.49 31.98 0.21 -1.44 16 9 C -0.11 -1.30 6.95 31.78 0.22 -1.08 16 10 C 0.08 1.77 4.86 86.73 0.42 2.19 16 11 N -0.62 -19.30 3.24 -812.14 -2.63 -21.93 16 12 C 0.59 25.06 7.38 86.73 0.64 25.70 16 13 O -0.60 -29.70 15.02 -0.53 -0.01 -29.71 16 14 C -0.27 -12.70 5.89 -19.93 -0.12 -12.82 16 15 C -0.09 -3.92 8.51 22.25 0.19 -3.73 16 16 C -0.18 -8.95 8.61 22.47 0.19 -8.76 16 17 C 0.10 5.15 5.55 -21.28 -0.12 5.03 16 18 C -0.48 -24.70 9.03 23.46 0.21 -24.49 16 19 H 0.08 3.91 7.85 -2.91 -0.02 3.88 16 20 C 0.03 1.58 5.42 85.35 0.46 2.05 16 21 N -0.81 -38.62 10.59 21.87 0.23 -38.39 16 22 Si 0.99 35.64 29.56 68.60 2.03 37.67 16 23 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 24 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 25 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 26 C -0.24 -12.35 9.73 22.47 0.22 -12.13 16 27 C -0.04 -2.22 9.52 22.25 0.21 -2.01 16 28 N -0.50 -16.34 11.55 -303.22 -3.50 -19.84 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.13 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.28 8.05 -2.38 -0.02 1.26 16 34 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.94 6.66 -2.39 -0.02 1.92 16 37 H 0.09 1.98 6.79 -2.39 -0.02 1.96 16 38 H 0.17 5.58 2.73 -9.22 -0.03 5.56 16 39 H 0.13 6.23 6.13 -2.91 -0.02 6.21 16 40 H 0.29 12.37 8.29 -92.71 -0.77 11.60 16 41 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 42 H 0.09 4.63 7.65 -2.92 -0.02 4.60 16 Total: -1.00 -73.31 349.41 2.57 -70.74 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 1.05 Total: 27.21 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 5.28 Total: -12.86 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -6.64 Total: -96.17 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: 0.84 Total: -26.58 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Total: -73.31 2.57 -70.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286529651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.076 kcal (2) G-P(sol) polarization free energy of solvation -73.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds