Wall clock time and date at job start Tue Mar 31 2020 15:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.29945 * 126.28339 * 2 1 4 4 O 1.21307 * 110.24811 * 179.72501 * 3 2 1 5 5 C 1.33642 * 109.80939 * 0.47563 * 4 3 2 6 6 C 1.50696 * 126.55083 * 179.79977 * 5 4 3 7 7 H 1.09000 * 110.32437 * 193.98619 * 6 5 4 8 8 C 1.54902 * 110.36798 * 71.74933 * 6 5 4 9 9 C 1.55163 * 101.58438 * 204.04228 * 8 6 5 10 10 C 1.54330 * 102.93882 * 35.49928 * 9 8 6 11 11 N 1.47026 * 107.27189 * 337.80799 * 10 9 8 12 12 C 1.34778 * 125.64651 * 178.97277 * 11 10 9 13 13 O 1.21544 * 119.99383 * 174.72802 * 12 11 10 14 14 C 1.47881 * 120.00014 * 354.73237 * 12 11 10 15 15 C 1.39919 * 120.02772 * 7.98467 * 14 12 11 16 16 C 1.38322 * 120.36166 * 179.78851 * 15 14 12 17 17 C 1.37756 * 120.40900 * 0.46145 * 16 15 14 18 18 C 1.40752 * 120.04173 * 359.79142 * 17 16 15 19 19 C 1.41432 * 120.18001 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99919 * 34.76077 * 19 18 17 21 21 C 1.39936 * 120.00456 * 214.75819 * 19 18 17 22 22 N 1.30832 * 119.99414 * 355.50779 * 21 19 18 23 23 Si 1.86791 * 120.00408 * 175.50867 * 21 19 18 24 24 H 1.48501 * 109.47256 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47098 * 119.99751 * 23 21 19 26 26 H 1.48495 * 109.47210 * 240.00078 * 23 21 19 27 27 C 1.38995 * 120.02201 * 188.25381 * 14 12 11 28 28 N 1.31139 * 106.89663 * 359.53255 * 5 4 3 29 29 H 1.09001 * 109.46588 * 269.97179 * 1 2 3 30 30 H 1.08999 * 109.47371 * 29.97215 * 1 2 3 31 31 H 1.08997 * 109.46959 * 149.97358 * 1 2 3 32 32 H 1.09000 * 111.00755 * 322.11448 * 8 6 5 33 33 H 1.08998 * 111.01206 * 85.93190 * 8 6 5 34 34 H 1.08993 * 110.72270 * 153.86042 * 9 8 6 35 35 H 1.08992 * 110.71663 * 276.96298 * 9 8 6 36 36 H 1.09000 * 109.88042 * 97.22252 * 10 9 8 37 37 H 1.08995 * 109.88015 * 218.39347 * 10 9 8 38 38 H 1.08000 * 119.81859 * 359.97438 * 15 14 12 39 39 H 1.08000 * 119.79719 * 180.22830 * 16 15 14 40 40 H 1.08003 * 119.98204 * 179.76764 * 17 16 15 41 41 H 0.96996 * 119.99535 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.20577 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4420 0.7124 0.0055 5 6 3.5300 -0.6211 -0.0008 6 6 4.7970 -1.4369 -0.0015 7 1 4.5791 -2.4745 -0.2542 8 6 5.4928 -1.3531 1.3800 9 6 6.9652 -1.6703 1.0070 10 6 7.1207 -1.0091 -0.3788 11 7 5.7732 -0.8718 -0.9507 12 6 5.4793 -0.3212 -2.1453 13 8 4.3376 -0.3463 -2.5615 14 6 6.5458 0.3133 -2.9495 15 6 7.8832 0.1977 -2.5547 16 6 8.8867 0.7847 -3.3041 17 6 8.5806 1.4977 -4.4424 18 6 7.2406 1.6293 -4.8525 19 6 6.9230 2.3611 -6.0203 20 1 7.5931 2.3440 -6.8672 21 6 5.7406 3.1073 -6.0787 22 7 4.8868 3.0583 -5.0885 23 14 5.3813 4.1730 -7.5700 24 1 6.4963 4.0542 -8.5436 25 1 4.1181 3.7225 -8.2076 26 1 5.2436 5.5891 -7.1448 27 6 6.2200 1.0296 -4.0952 28 7 2.3030 -1.0841 -0.0005 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 5.4038 -0.3522 1.8023 33 1 5.0930 -2.1008 2.0649 34 1 7.6504 -1.2228 1.7268 35 1 7.1235 -2.7468 0.9435 36 1 7.5796 -0.0262 -0.2711 37 1 7.7345 -1.6385 -1.0231 38 1 8.1335 -0.3554 -1.6615 39 1 9.9162 0.6866 -2.9930 40 1 9.3693 1.9564 -5.0204 41 1 4.0671 3.5752 -5.1291 42 1 5.1888 1.1248 -4.4016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286710966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:58 Heat of formation + Delta-G solvation = 81.323983 kcal Electronic energy + Delta-G solvation = -27979.796286 eV Core-core repulsion = 24121.948034 eV Total energy + Delta-G solvation = -3857.848253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.29619 -40.13635 -37.64249 -36.77912 -35.81268 -33.81839 -33.06095 -31.77222 -30.27689 -29.45517 -29.26362 -28.65643 -25.35943 -24.71780 -23.48193 -22.49581 -21.90960 -20.94331 -20.47470 -19.15637 -17.78685 -17.74028 -16.97988 -16.68660 -15.94087 -15.47289 -15.01131 -14.70955 -14.27377 -14.13607 -13.92354 -13.55707 -13.52302 -13.25677 -13.04866 -12.89534 -12.70776 -12.54841 -12.30760 -12.07363 -12.00044 -11.70765 -11.61585 -11.19002 -11.15039 -11.01055 -10.95720 -10.82716 -10.54025 -10.20261 -10.05991 -9.71919 -9.59050 -9.29609 -9.03050 -8.59187 -7.66970 -7.39535 -6.63666 -4.45180 1.37610 2.11784 2.39809 2.81540 2.94028 3.08738 3.09804 3.12594 3.15890 3.71059 3.86537 3.96971 4.22968 4.26562 4.41086 4.65799 4.76424 5.00039 5.07784 5.21506 5.35652 5.41145 5.48387 5.51060 5.52498 5.63047 5.64476 5.69417 5.75088 5.96121 6.01806 6.06032 6.17366 6.25295 6.38388 6.67764 6.96824 7.01103 7.25956 7.37353 7.59419 7.70501 7.84376 8.00644 8.19649 8.40939 8.52146 8.71922 8.84516 8.87096 10.27114 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.004523 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.435853 B = 6188.652824 C = 8283.539150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.163 3.837 3 N -0.381 5.381 4 O 0.091 5.909 5 C 0.197 3.803 6 C 0.230 3.770 7 H 0.118 0.882 8 C -0.126 4.126 9 C -0.134 4.134 10 C 0.098 3.902 11 N -0.621 5.621 12 C 0.582 3.418 13 O -0.532 6.532 14 C -0.131 4.131 15 C -0.236 4.236 16 C -0.109 4.109 17 C -0.196 4.196 18 C 0.093 3.907 19 C -0.465 4.465 20 H 0.079 0.921 21 C 0.068 3.932 22 N -0.803 5.803 23 Si 0.916 3.084 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.078 4.078 28 N -0.481 5.481 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.280 0.720 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 -8.322 13.627 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.110 4.110 3 N -0.088 5.088 4 O 0.033 5.967 5 C -0.024 4.024 6 C 0.124 3.876 7 H 0.135 0.865 8 C -0.165 4.165 9 C -0.172 4.172 10 C -0.024 4.024 11 N -0.359 5.359 12 C 0.376 3.624 13 O -0.409 6.409 14 C -0.134 4.134 15 C -0.255 4.255 16 C -0.128 4.128 17 C -0.215 4.215 18 C 0.090 3.910 19 C -0.495 4.495 20 H 0.097 0.903 21 C -0.148 4.148 22 N -0.430 5.430 23 Si 0.741 3.259 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.099 4.099 28 N -0.216 5.216 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.146 0.854 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.223 -7.664 13.343 15.436 hybrid contribution -0.073 0.623 -0.764 0.989 sum -1.296 -7.041 12.578 14.473 Atomic orbital electron populations 1.20073 0.83237 1.04609 1.03728 1.25761 1.00366 0.83653 1.01242 1.74590 0.89423 1.24009 1.20824 1.85281 1.22166 1.24381 1.64899 1.28447 0.96436 0.82462 0.95092 1.20287 0.81255 0.94703 0.91336 0.86469 1.22897 0.95569 1.04035 0.93987 1.22782 0.95853 1.01848 0.96673 1.22603 0.84416 1.01848 0.93512 1.48600 1.06939 1.62395 1.17990 1.18787 0.89088 0.76006 0.78497 1.90744 1.22365 1.58259 1.69499 1.19361 0.91790 1.04038 0.98222 1.21749 0.92067 1.08405 1.03300 1.20509 0.96905 0.99197 0.96150 1.21313 0.96672 1.05218 0.98336 1.17642 0.90403 0.89890 0.93022 1.19550 1.04465 1.25100 1.00433 0.90280 1.25922 0.94940 0.96852 0.97058 1.69735 1.08559 1.34516 1.30170 0.86130 0.79105 0.79529 0.81152 1.18515 1.19911 1.19900 1.21937 1.01688 0.93420 0.92828 1.71737 0.99390 1.29582 1.20888 0.89689 0.89634 0.89249 0.89700 0.88733 0.89176 0.89938 0.89387 0.89543 0.85424 0.88752 0.88528 0.90835 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 36.01 0.38 -0.31 16 2 C 0.16 2.79 8.22 -156.38 -1.28 1.50 16 3 N -0.38 -7.43 12.16 30.90 0.38 -7.06 16 4 O 0.09 1.80 11.02 17.17 0.19 1.99 16 5 C 0.20 3.42 5.47 -13.05 -0.07 3.35 16 6 C 0.23 3.17 3.68 -67.58 -0.25 2.92 16 7 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 8 C -0.13 -1.14 6.49 -24.58 -0.16 -1.30 16 9 C -0.13 -1.00 6.95 -24.89 -0.17 -1.17 16 10 C 0.10 1.14 4.87 -3.06 -0.01 1.13 16 11 N -0.62 -10.11 3.24 -169.82 -0.55 -10.66 16 12 C 0.58 12.80 7.43 -12.31 -0.09 12.71 16 13 O -0.53 -13.64 15.09 4.40 0.07 -13.57 16 14 C -0.13 -3.07 5.86 -105.04 -0.62 -3.68 16 15 C -0.24 -4.71 8.60 -38.92 -0.33 -5.04 16 16 C -0.11 -2.23 10.01 -39.73 -0.40 -2.63 16 17 C -0.20 -4.57 9.78 -38.81 -0.38 -4.95 16 18 C 0.09 2.46 5.55 -106.87 -0.59 1.87 16 19 C -0.47 -12.42 9.04 -37.73 -0.34 -12.76 16 20 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 21 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 22 N -0.80 -22.11 10.60 55.55 0.59 -21.52 16 23 Si 0.92 19.47 29.56 -169.99 -5.03 14.45 16 24 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 C -0.08 -2.12 8.21 -38.44 -0.32 -2.43 16 28 N -0.48 -8.45 11.55 -9.87 -0.11 -8.56 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 1.07 6.67 -51.93 -0.35 0.72 16 37 H 0.09 0.96 6.80 -51.93 -0.35 0.60 16 38 H 0.13 1.99 2.74 -58.19 -0.16 1.83 16 39 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.10 2.10 8.06 -52.48 -0.42 1.67 16 41 H 0.28 7.19 8.30 -40.82 -0.34 6.85 16 42 H 0.14 4.23 5.74 -52.49 -0.30 3.93 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -34.00 349.88 -8.86 -42.86 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.93 Total: 5.91 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -4.74 Total: -9.12 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.30 Total: -47.80 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.26 Total: -11.58 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.00 -8.86 -42.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286710966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.186 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds