Wall clock time and date at job start Tue Mar 31 2020 15:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.29945 * 126.28339 * 2 1 4 4 O 1.21307 * 110.24811 * 179.72501 * 3 2 1 5 5 C 1.33642 * 109.80939 * 0.47563 * 4 3 2 6 6 C 1.50696 * 126.55083 * 179.79977 * 5 4 3 7 7 H 1.09000 * 110.32437 * 193.98619 * 6 5 4 8 8 C 1.54902 * 110.36798 * 71.74933 * 6 5 4 9 9 C 1.55163 * 101.58438 * 204.04228 * 8 6 5 10 10 C 1.54330 * 102.93882 * 35.49928 * 9 8 6 11 11 N 1.47026 * 107.27189 * 337.80799 * 10 9 8 12 12 C 1.34778 * 125.64651 * 178.97277 * 11 10 9 13 13 O 1.21544 * 119.99383 * 174.72802 * 12 11 10 14 14 C 1.47881 * 120.00014 * 354.73237 * 12 11 10 15 15 C 1.39919 * 120.02772 * 7.98467 * 14 12 11 16 16 C 1.38322 * 120.36166 * 179.78851 * 15 14 12 17 17 C 1.37756 * 120.40900 * 0.46145 * 16 15 14 18 18 C 1.40752 * 120.04173 * 359.79142 * 17 16 15 19 19 C 1.41432 * 120.18001 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99919 * 34.76077 * 19 18 17 21 21 C 1.39936 * 120.00456 * 214.75819 * 19 18 17 22 22 N 1.30832 * 119.99414 * 355.50779 * 21 19 18 23 23 Si 1.86791 * 120.00408 * 175.50867 * 21 19 18 24 24 H 1.48501 * 109.47256 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47098 * 119.99751 * 23 21 19 26 26 H 1.48495 * 109.47210 * 240.00078 * 23 21 19 27 27 C 1.38995 * 120.02201 * 188.25381 * 14 12 11 28 28 N 1.31139 * 106.89663 * 359.53255 * 5 4 3 29 29 H 1.09001 * 109.46588 * 269.97179 * 1 2 3 30 30 H 1.08999 * 109.47371 * 29.97215 * 1 2 3 31 31 H 1.08997 * 109.46959 * 149.97358 * 1 2 3 32 32 H 1.09000 * 111.00755 * 322.11448 * 8 6 5 33 33 H 1.08998 * 111.01206 * 85.93190 * 8 6 5 34 34 H 1.08993 * 110.72270 * 153.86042 * 9 8 6 35 35 H 1.08992 * 110.71663 * 276.96298 * 9 8 6 36 36 H 1.09000 * 109.88042 * 97.22252 * 10 9 8 37 37 H 1.08995 * 109.88015 * 218.39347 * 10 9 8 38 38 H 1.08000 * 119.81859 * 359.97438 * 15 14 12 39 39 H 1.08000 * 119.79719 * 180.22830 * 16 15 14 40 40 H 1.08003 * 119.98204 * 179.76764 * 17 16 15 41 41 H 0.96996 * 119.99535 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.20577 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4420 0.7124 0.0055 5 6 3.5300 -0.6211 -0.0008 6 6 4.7970 -1.4369 -0.0015 7 1 4.5791 -2.4745 -0.2542 8 6 5.4928 -1.3531 1.3800 9 6 6.9652 -1.6703 1.0070 10 6 7.1207 -1.0091 -0.3788 11 7 5.7732 -0.8718 -0.9507 12 6 5.4793 -0.3212 -2.1453 13 8 4.3376 -0.3463 -2.5615 14 6 6.5458 0.3133 -2.9495 15 6 7.8832 0.1977 -2.5547 16 6 8.8867 0.7847 -3.3041 17 6 8.5806 1.4977 -4.4424 18 6 7.2406 1.6293 -4.8525 19 6 6.9230 2.3611 -6.0203 20 1 7.5931 2.3440 -6.8672 21 6 5.7406 3.1073 -6.0787 22 7 4.8868 3.0583 -5.0885 23 14 5.3813 4.1730 -7.5700 24 1 6.4963 4.0542 -8.5436 25 1 4.1181 3.7225 -8.2076 26 1 5.2436 5.5891 -7.1448 27 6 6.2200 1.0296 -4.0952 28 7 2.3030 -1.0841 -0.0005 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 5.4038 -0.3522 1.8023 33 1 5.0930 -2.1008 2.0649 34 1 7.6504 -1.2228 1.7268 35 1 7.1235 -2.7468 0.9435 36 1 7.5796 -0.0262 -0.2711 37 1 7.7345 -1.6385 -1.0231 38 1 8.1335 -0.3554 -1.6615 39 1 9.9162 0.6866 -2.9930 40 1 9.3693 1.9564 -5.0204 41 1 4.0671 3.5752 -5.1291 42 1 5.1888 1.1248 -4.4016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286710966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:57 Heat of formation + Delta-G solvation = 57.276771 kcal Electronic energy + Delta-G solvation = -27980.839052 eV Core-core repulsion = 24121.948034 eV Total energy + Delta-G solvation = -3858.891018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.65080 -41.53047 -39.19187 -38.41563 -37.13434 -35.63583 -34.40487 -33.06866 -31.73893 -31.25446 -30.48502 -29.86387 -27.21930 -26.01429 -24.84562 -23.90043 -23.10522 -22.54732 -21.78821 -20.64699 -19.46282 -19.15772 -18.40256 -17.81708 -17.53570 -17.24983 -16.58746 -16.36262 -15.61363 -15.33433 -15.08894 -14.99741 -14.79842 -14.53998 -14.47485 -14.33693 -14.12427 -13.83488 -13.58004 -13.50898 -13.21323 -12.99517 -12.94690 -12.87906 -12.59865 -12.34065 -12.33592 -12.19947 -11.91479 -11.78570 -11.66073 -11.23906 -11.19494 -11.06237 -10.68496 -9.94379 -9.46943 -9.25640 -8.54522 -6.46579 0.03383 0.32767 1.01107 1.09315 1.32214 1.41799 1.48949 1.65102 1.81458 2.05429 2.18460 2.61433 2.79581 3.04179 3.33975 3.57682 3.62660 3.81296 3.90963 4.09621 4.17227 4.37537 4.44846 4.49347 4.49884 4.56503 4.65270 4.72995 4.80473 4.84711 4.86638 4.92775 5.00417 5.05703 5.10809 5.19383 5.26450 5.33525 5.37507 5.52923 5.82051 5.91583 6.08511 6.27456 6.32616 6.61211 6.89119 6.95170 7.04693 7.10792 8.37002 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.004523 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.435853 B = 6188.652824 C = 8283.539150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.162 3.838 3 N -0.417 5.417 4 O 0.059 5.941 5 C 0.196 3.804 6 C 0.218 3.782 7 H 0.133 0.867 8 C -0.115 4.115 9 C -0.112 4.112 10 C 0.077 3.923 11 N -0.613 5.613 12 C 0.574 3.426 13 O -0.586 6.586 14 C -0.145 4.145 15 C -0.208 4.208 16 C -0.106 4.106 17 C -0.197 4.197 18 C 0.057 3.943 19 C -0.501 4.501 20 H 0.082 0.918 21 C 0.020 3.980 22 N -0.850 5.850 23 Si 0.989 3.011 24 H -0.248 1.248 25 H -0.273 1.273 26 H -0.267 1.267 27 C -0.121 4.121 28 N -0.496 5.496 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.183 0.817 39 H 0.147 0.853 40 H 0.111 0.889 41 H 0.278 0.722 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 -10.234 16.355 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.111 4.111 3 N -0.131 5.131 4 O 0.006 5.994 5 C -0.025 4.025 6 C 0.113 3.887 7 H 0.150 0.850 8 C -0.154 4.154 9 C -0.149 4.149 10 C -0.043 4.043 11 N -0.348 5.348 12 C 0.368 3.632 13 O -0.467 6.467 14 C -0.148 4.148 15 C -0.226 4.226 16 C -0.124 4.124 17 C -0.217 4.217 18 C 0.055 3.945 19 C -0.533 4.533 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.478 5.478 23 Si 0.809 3.191 24 H -0.171 1.171 25 H -0.198 1.198 26 H -0.192 1.192 27 C -0.142 4.142 28 N -0.232 5.232 29 H 0.135 0.865 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.199 0.801 39 H 0.165 0.835 40 H 0.129 0.871 41 H 0.088 0.912 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.440 -9.615 16.125 18.829 hybrid contribution -0.769 1.022 -1.418 1.910 sum 0.671 -8.592 14.707 17.046 Atomic orbital electron populations 1.20352 0.79939 1.05375 1.05981 1.26720 1.02320 0.83052 0.99010 1.74569 0.89750 1.25437 1.23308 1.85213 1.22524 1.25607 1.66019 1.29297 0.97778 0.82006 0.93441 1.20978 0.79887 0.94287 0.93560 0.84956 1.23006 0.96251 1.04979 0.91162 1.22807 0.94813 1.03433 0.93872 1.22998 0.82026 1.02809 0.96505 1.48529 1.09808 1.60140 1.16361 1.18631 0.87930 0.76502 0.80179 1.90706 1.24102 1.60473 1.71392 1.19695 0.94170 1.03451 0.97512 1.22500 0.90074 1.06099 1.03973 1.21085 0.99582 0.97249 0.94490 1.21638 0.95477 1.05074 0.99516 1.17974 0.91966 0.90792 0.93774 1.19838 1.05564 1.26646 1.01209 0.90024 1.26868 0.94412 0.97906 0.99913 1.69925 1.09165 1.36107 1.32643 0.85058 0.79005 0.77567 0.77440 1.17128 1.19848 1.19211 1.21662 1.00004 0.96828 0.95680 1.71761 0.99704 1.29819 1.21872 0.86539 0.89261 0.87989 0.90366 0.85353 0.86027 0.87075 0.89406 0.87937 0.80109 0.83513 0.87116 0.91198 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.36 10.51 71.24 0.75 -0.61 16 2 C 0.16 5.68 8.22 138.47 1.14 6.82 16 3 N -0.42 -17.08 12.16 -60.31 -0.73 -17.82 16 4 O 0.06 2.44 11.02 75.72 0.83 3.27 16 5 C 0.20 6.87 5.47 88.38 0.48 7.35 16 6 C 0.22 5.62 3.68 44.72 0.16 5.78 16 7 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 8 C -0.12 -1.60 6.49 31.99 0.21 -1.39 16 9 C -0.11 -0.98 6.95 31.79 0.22 -0.76 16 10 C 0.08 1.44 4.87 86.73 0.42 1.87 16 11 N -0.61 -19.08 3.24 -809.46 -2.62 -21.70 16 12 C 0.57 26.01 7.43 86.80 0.65 26.66 16 13 O -0.59 -32.10 15.09 -2.97 -0.04 -32.15 16 14 C -0.15 -6.96 5.86 -20.14 -0.12 -7.08 16 15 C -0.21 -7.76 8.60 22.70 0.20 -7.57 16 16 C -0.11 -3.99 10.01 22.18 0.22 -3.77 16 17 C -0.20 -9.13 9.78 22.77 0.22 -8.91 16 18 C 0.06 3.16 5.55 -21.32 -0.12 3.05 16 19 C -0.50 -28.38 9.04 23.47 0.21 -28.17 16 20 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 21 C 0.02 1.09 5.42 85.25 0.46 1.55 16 22 N -0.85 -50.89 10.60 21.82 0.23 -50.66 16 23 Si 0.99 42.12 29.56 68.60 2.03 44.15 16 24 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 27 C -0.12 -6.98 8.21 23.01 0.19 -6.79 16 28 N -0.50 -17.62 11.55 -303.18 -3.50 -21.12 16 29 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 1.25 8.05 -2.39 -0.02 1.23 16 33 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.09 1.72 6.67 -2.39 -0.02 1.70 16 37 H 0.10 1.68 6.80 -2.39 -0.02 1.66 16 38 H 0.18 4.73 2.74 -8.27 -0.02 4.70 16 39 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 40 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 41 H 0.28 15.58 8.30 -92.71 -0.77 14.81 16 42 H 0.10 6.46 5.74 -2.91 -0.02 6.44 16 Total: -1.00 -86.23 349.88 2.54 -83.68 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 1.06 Total: 24.33 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.30 Total: -11.99 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -6.63 Total: -111.29 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: 0.79 Total: -28.87 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -86.23 2.54 -83.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286710966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.961 kcal (2) G-P(sol) polarization free energy of solvation -86.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds