Wall clock time and date at job start Tue Mar 31 2020 15:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29946 * 126.28507 * 2 1 4 4 O 1.21306 * 110.25173 * 179.69238 * 3 2 1 5 5 C 1.33647 * 109.80654 * 0.46737 * 4 3 2 6 6 C 1.50700 * 126.54835 * 179.80012 * 5 4 3 7 7 H 1.09002 * 110.41670 * 166.99205 * 6 5 4 8 8 C 1.55134 * 110.34275 * 289.43353 * 6 5 4 9 9 C 1.55164 * 101.48478 * 156.06160 * 8 6 5 10 10 C 1.54318 * 102.93872 * 324.33119 * 9 8 6 11 11 N 1.47022 * 107.27553 * 22.19218 * 10 9 8 12 12 C 1.34772 * 125.64865 * 181.02212 * 11 10 9 13 13 O 1.21553 * 120.00122 * 174.12681 * 12 11 10 14 14 C 1.47883 * 120.00164 * 354.12419 * 12 11 10 15 15 C 1.39921 * 120.02585 * 187.68129 * 14 12 11 16 16 C 1.38333 * 120.35786 * 179.97438 * 15 14 12 17 17 C 1.37752 * 120.41237 * 359.71759 * 16 15 14 18 18 C 1.40749 * 120.03956 * 0.55976 * 17 16 15 19 19 C 1.41431 * 120.17997 * 179.71741 * 18 17 16 20 20 H 1.07998 * 120.00246 * 206.14403 * 19 18 17 21 21 C 1.39942 * 119.99992 * 26.41542 * 19 18 17 22 22 N 1.30827 * 119.99531 * 6.25988 * 21 19 18 23 23 Si 1.86794 * 120.00080 * 186.25406 * 21 19 18 24 24 H 1.48507 * 109.47173 * 60.00095 * 23 21 19 25 25 H 1.48499 * 109.47324 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47466 * 300.00228 * 23 21 19 27 27 C 1.38994 * 120.02869 * 7.65308 * 14 12 11 28 28 N 1.31125 * 106.89811 * 359.54384 * 5 4 3 29 29 H 1.09000 * 109.46747 * 270.01495 * 1 2 3 30 30 H 1.08994 * 109.47768 * 30.01381 * 1 2 3 31 31 H 1.09003 * 109.46913 * 150.02185 * 1 2 3 32 32 H 1.08994 * 111.19286 * 37.95300 * 8 6 5 33 33 H 1.09001 * 110.93546 * 274.05278 * 8 6 5 34 34 H 1.08998 * 110.71478 * 205.96915 * 9 8 6 35 35 H 1.08995 * 110.86981 * 82.76695 * 9 8 6 36 36 H 1.09007 * 109.88314 * 262.77199 * 10 9 8 37 37 H 1.09001 * 110.01145 * 141.69054 * 10 9 8 38 38 H 1.07993 * 119.82314 * 359.95102 * 15 14 12 39 39 H 1.08002 * 119.78948 * 180.02562 * 16 15 14 40 40 H 1.08006 * 119.98038 * 180.29780 * 17 16 15 41 41 H 0.97004 * 119.99745 * 180.02562 * 22 21 19 42 42 H 1.08007 * 120.19822 * 0.04824 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7124 0.0061 5 6 3.5299 -0.6211 0.0005 6 6 4.7970 -1.4369 0.0008 7 1 4.5772 -2.4806 0.2254 8 6 5.5166 -1.3158 -1.3682 9 6 6.9815 -1.6460 -0.9774 10 6 7.1141 -1.0195 0.4267 11 7 5.7572 -0.8928 0.9782 12 6 5.4436 -0.3711 2.1806 13 8 4.2785 -0.2180 2.4915 14 6 6.5169 0.0149 3.1219 15 6 6.1968 0.4046 4.4270 16 6 7.1953 0.7666 5.3133 17 6 8.5163 0.7421 4.9235 18 6 8.8571 0.3585 3.6128 19 6 10.2120 0.3381 3.2076 20 1 10.4660 0.4648 2.1656 21 6 11.2232 0.1480 4.1561 22 7 10.9129 -0.1326 5.3957 23 14 13.0159 0.2947 3.6522 24 1 13.2716 1.6588 3.1238 25 1 13.8834 0.0510 4.8326 26 1 13.3181 -0.7085 2.5998 27 6 7.8444 -0.0096 2.7109 28 7 2.3030 -1.0840 0.0002 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5140 31 1 -0.3633 -0.8902 -0.5135 32 1 5.4371 -0.3046 -1.7671 33 1 5.1278 -2.0455 -2.0785 34 1 7.6802 -1.1827 -1.6740 35 1 7.1387 -2.7237 -0.9353 36 1 7.5771 -0.0355 0.3514 37 1 7.7161 -1.6640 1.0673 38 1 5.1646 0.4232 4.7441 39 1 6.9379 1.0654 6.3187 40 1 9.2906 1.0215 5.6226 41 1 11.6138 -0.2640 6.0533 42 1 8.0961 -0.3094 1.7043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286710972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:03 Heat of formation + Delta-G solvation = 78.898073 kcal Electronic energy + Delta-G solvation = -27734.420881 eV Core-core repulsion = 23876.467433 eV Total energy + Delta-G solvation = -3857.953448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.35583 -40.18690 -37.65508 -36.89385 -35.87738 -33.76609 -33.18950 -31.86510 -30.26922 -29.83817 -29.12197 -28.52728 -25.41134 -24.75174 -23.52759 -22.52712 -21.87173 -21.14605 -20.38122 -19.36101 -17.83442 -17.61698 -16.94222 -16.68170 -16.16564 -15.49349 -15.10759 -14.79281 -14.34799 -14.16461 -13.99852 -13.61175 -13.58477 -13.23796 -13.09375 -12.98526 -12.73100 -12.53131 -12.35950 -12.09781 -12.05218 -11.71497 -11.45739 -11.23729 -11.22540 -11.01994 -10.97945 -10.87485 -10.57850 -10.48458 -10.23180 -9.82171 -9.42544 -9.33977 -9.11140 -8.62711 -7.69308 -7.50733 -6.76278 -4.51614 1.31397 2.08660 2.33397 2.70118 2.88185 3.01432 3.03048 3.05649 3.10058 3.65378 3.81574 3.86758 4.17827 4.22887 4.45383 4.59047 4.75400 5.00065 5.07968 5.21287 5.30418 5.36081 5.39804 5.51472 5.53297 5.57366 5.67795 5.77044 5.84488 5.94863 6.02860 6.11052 6.14231 6.32059 6.39300 6.73396 6.88955 6.96110 7.16336 7.31451 7.54192 7.71921 7.86688 7.90563 8.07835 8.33909 8.48094 8.59527 8.77011 8.80071 10.13704 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020100 B = 0.003351 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.672694 B = 8354.244668 C = 9397.298405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.163 3.837 3 N -0.385 5.385 4 O 0.091 5.909 5 C 0.203 3.797 6 C 0.228 3.772 7 H 0.120 0.880 8 C -0.125 4.125 9 C -0.133 4.133 10 C 0.095 3.905 11 N -0.618 5.618 12 C 0.583 3.417 13 O -0.546 6.546 14 C -0.119 4.119 15 C -0.167 4.167 16 C -0.121 4.121 17 C -0.132 4.132 18 C 0.094 3.906 19 C -0.460 4.460 20 H 0.078 0.922 21 C 0.071 3.929 22 N -0.806 5.806 23 Si 0.914 3.086 24 H -0.265 1.265 25 H -0.279 1.279 26 H -0.265 1.265 27 C -0.217 4.217 28 N -0.484 5.484 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.135 0.865 41 H 0.281 0.719 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.903 -3.592 -12.314 14.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.109 4.109 3 N -0.094 5.094 4 O 0.032 5.968 5 C -0.018 4.018 6 C 0.122 3.878 7 H 0.137 0.863 8 C -0.164 4.164 9 C -0.171 4.171 10 C -0.027 4.027 11 N -0.355 5.355 12 C 0.378 3.622 13 O -0.424 6.424 14 C -0.122 4.122 15 C -0.187 4.187 16 C -0.139 4.139 17 C -0.152 4.152 18 C 0.092 3.908 19 C -0.490 4.490 20 H 0.096 0.904 21 C -0.145 4.145 22 N -0.432 5.432 23 Si 0.739 3.261 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.190 1.190 27 C -0.236 4.236 28 N -0.219 5.219 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.153 0.847 41 H 0.092 0.908 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.058 -3.011 -11.813 14.613 hybrid contribution 0.947 -0.046 0.190 0.967 sum -7.111 -3.057 -11.623 13.964 Atomic orbital electron populations 1.20071 0.83279 1.04160 1.04155 1.25743 1.00322 0.83718 1.01159 1.74551 0.89494 1.24096 1.21226 1.85255 1.22066 1.24466 1.64977 1.28411 0.96369 0.82395 0.94598 1.20422 0.81378 0.94923 0.91093 0.86273 1.22938 0.95578 1.03963 0.93957 1.22785 0.95753 1.02174 0.96418 1.22697 0.83690 1.02384 0.93910 1.48550 1.07228 1.63259 1.16421 1.18779 0.89247 0.74920 0.79269 1.90697 1.20934 1.55106 1.75663 1.19101 0.92080 1.07094 0.93918 1.20495 0.97951 1.07401 0.92901 1.20751 0.93717 1.01741 0.97712 1.21935 0.94628 1.00266 0.98340 1.17608 0.92754 0.88948 0.91532 1.19500 0.90290 1.44045 0.95150 0.90431 1.25897 1.01754 0.92403 0.94474 1.69718 1.35421 1.35055 1.03049 0.86264 0.81026 0.79861 0.78941 1.18931 1.20384 1.18990 1.22496 0.91401 1.07635 1.02035 1.71747 0.99410 1.29557 1.21173 0.89525 0.89786 0.89302 0.89675 0.88741 0.89038 0.89812 0.89304 0.88739 0.88254 0.88610 0.84704 0.90814 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.51 36.00 0.38 -0.24 16 2 C 0.16 2.59 8.22 -156.37 -1.28 1.31 16 3 N -0.39 -6.89 12.16 30.90 0.38 -6.51 16 4 O 0.09 1.65 10.73 5.28 0.06 1.71 16 5 C 0.20 3.33 5.39 -13.06 -0.07 3.26 16 6 C 0.23 3.05 3.74 -67.45 -0.25 2.80 16 7 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 8 C -0.13 -1.14 6.50 -24.46 -0.16 -1.30 16 9 C -0.13 -1.12 6.95 -24.90 -0.17 -1.29 16 10 C 0.09 1.22 4.87 -3.07 -0.01 1.20 16 11 N -0.62 -9.93 3.24 -169.56 -0.55 -10.48 16 12 C 0.58 12.12 7.59 -12.31 -0.09 12.02 16 13 O -0.55 -12.76 14.54 -7.49 -0.11 -12.87 16 14 C -0.12 -2.67 5.87 -105.04 -0.62 -3.29 16 15 C -0.17 -3.90 9.60 -38.92 -0.37 -4.27 16 16 C -0.12 -2.80 10.01 -39.72 -0.40 -3.19 16 17 C -0.13 -3.27 8.70 -38.81 -0.34 -3.61 16 18 C 0.09 2.30 5.60 -106.87 -0.60 1.71 16 19 C -0.46 -11.09 9.08 -37.73 -0.34 -11.43 16 20 H 0.08 1.74 7.85 -52.49 -0.41 1.33 16 21 C 0.07 1.65 5.34 -17.34 -0.09 1.56 16 22 N -0.81 -19.65 10.46 55.55 0.58 -19.07 16 23 Si 0.91 17.49 29.56 -169.99 -5.03 12.46 16 24 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 25 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 26 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 27 C -0.22 -4.75 8.36 -38.44 -0.32 -5.07 16 28 N -0.48 -8.02 11.55 -9.87 -0.11 -8.13 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.19 6.73 -51.92 -0.35 0.84 16 37 H 0.09 1.29 6.75 -51.93 -0.35 0.94 16 38 H 0.10 2.28 7.65 -52.49 -0.40 1.88 16 39 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 40 H 0.14 3.45 5.84 -52.48 -0.31 3.15 16 41 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 42 H 0.13 2.48 2.74 -58.03 -0.16 2.32 16 LS Contribution 348.83 15.07 5.26 5.26 Total: -1.00 -31.30 348.83 -9.19 -40.49 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.91 Total: 6.99 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -4.75 Total: -9.85 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.29 Total: -44.19 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.05 Total: -11.16 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.30 -9.19 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286710972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.391 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds