Wall clock time and date at job start Tue Mar 31 2020 15:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29946 * 126.28507 * 2 1 4 4 O 1.21306 * 110.25173 * 179.69238 * 3 2 1 5 5 C 1.33647 * 109.80654 * 0.46737 * 4 3 2 6 6 C 1.50700 * 126.54835 * 179.80012 * 5 4 3 7 7 H 1.09002 * 110.41670 * 166.99205 * 6 5 4 8 8 C 1.55134 * 110.34275 * 289.43353 * 6 5 4 9 9 C 1.55164 * 101.48478 * 156.06160 * 8 6 5 10 10 C 1.54318 * 102.93872 * 324.33119 * 9 8 6 11 11 N 1.47022 * 107.27553 * 22.19218 * 10 9 8 12 12 C 1.34772 * 125.64865 * 181.02212 * 11 10 9 13 13 O 1.21553 * 120.00122 * 174.12681 * 12 11 10 14 14 C 1.47883 * 120.00164 * 354.12419 * 12 11 10 15 15 C 1.39921 * 120.02585 * 187.68129 * 14 12 11 16 16 C 1.38333 * 120.35786 * 179.97438 * 15 14 12 17 17 C 1.37752 * 120.41237 * 359.71759 * 16 15 14 18 18 C 1.40749 * 120.03956 * 0.55976 * 17 16 15 19 19 C 1.41431 * 120.17997 * 179.71741 * 18 17 16 20 20 H 1.07998 * 120.00246 * 206.14403 * 19 18 17 21 21 C 1.39942 * 119.99992 * 26.41542 * 19 18 17 22 22 N 1.30827 * 119.99531 * 6.25988 * 21 19 18 23 23 Si 1.86794 * 120.00080 * 186.25406 * 21 19 18 24 24 H 1.48507 * 109.47173 * 60.00095 * 23 21 19 25 25 H 1.48499 * 109.47324 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47466 * 300.00228 * 23 21 19 27 27 C 1.38994 * 120.02869 * 7.65308 * 14 12 11 28 28 N 1.31125 * 106.89811 * 359.54384 * 5 4 3 29 29 H 1.09000 * 109.46747 * 270.01495 * 1 2 3 30 30 H 1.08994 * 109.47768 * 30.01381 * 1 2 3 31 31 H 1.09003 * 109.46913 * 150.02185 * 1 2 3 32 32 H 1.08994 * 111.19286 * 37.95300 * 8 6 5 33 33 H 1.09001 * 110.93546 * 274.05278 * 8 6 5 34 34 H 1.08998 * 110.71478 * 205.96915 * 9 8 6 35 35 H 1.08995 * 110.86981 * 82.76695 * 9 8 6 36 36 H 1.09007 * 109.88314 * 262.77199 * 10 9 8 37 37 H 1.09001 * 110.01145 * 141.69054 * 10 9 8 38 38 H 1.07993 * 119.82314 * 359.95102 * 15 14 12 39 39 H 1.08002 * 119.78948 * 180.02562 * 16 15 14 40 40 H 1.08006 * 119.98038 * 180.29780 * 17 16 15 41 41 H 0.97004 * 119.99745 * 180.02562 * 22 21 19 42 42 H 1.08007 * 120.19822 * 0.04824 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7124 0.0061 5 6 3.5299 -0.6211 0.0005 6 6 4.7970 -1.4369 0.0008 7 1 4.5772 -2.4806 0.2254 8 6 5.5166 -1.3158 -1.3682 9 6 6.9815 -1.6460 -0.9774 10 6 7.1141 -1.0195 0.4267 11 7 5.7572 -0.8928 0.9782 12 6 5.4436 -0.3711 2.1806 13 8 4.2785 -0.2180 2.4915 14 6 6.5169 0.0149 3.1219 15 6 6.1968 0.4046 4.4270 16 6 7.1953 0.7666 5.3133 17 6 8.5163 0.7421 4.9235 18 6 8.8571 0.3585 3.6128 19 6 10.2120 0.3381 3.2076 20 1 10.4660 0.4648 2.1656 21 6 11.2232 0.1480 4.1561 22 7 10.9129 -0.1326 5.3957 23 14 13.0159 0.2947 3.6522 24 1 13.2716 1.6588 3.1238 25 1 13.8834 0.0510 4.8326 26 1 13.3181 -0.7085 2.5998 27 6 7.8444 -0.0096 2.7109 28 7 2.3030 -1.0840 0.0002 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5140 31 1 -0.3633 -0.8902 -0.5135 32 1 5.4371 -0.3046 -1.7671 33 1 5.1278 -2.0455 -2.0785 34 1 7.6802 -1.1827 -1.6740 35 1 7.1387 -2.7237 -0.9353 36 1 7.5771 -0.0355 0.3514 37 1 7.7161 -1.6640 1.0673 38 1 5.1646 0.4232 4.7441 39 1 6.9379 1.0654 6.3187 40 1 9.2906 1.0215 5.6226 41 1 11.6138 -0.2640 6.0533 42 1 8.0961 -0.3094 1.7043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286710972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:02 Heat of formation + Delta-G solvation = 59.660017 kcal Electronic energy + Delta-G solvation = -27735.255106 eV Core-core repulsion = 23876.467433 eV Total energy + Delta-G solvation = -3858.787673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.59455 -41.56593 -39.18237 -38.47629 -37.08656 -35.52580 -34.43107 -33.09031 -31.84561 -31.40354 -30.29091 -29.72796 -27.20695 -26.03948 -24.78648 -23.85017 -23.06940 -22.68105 -21.77223 -20.81375 -19.15230 -19.09454 -18.35620 -17.80032 -17.65750 -17.21195 -16.60380 -16.44192 -15.72084 -15.29218 -15.09142 -15.00125 -14.78829 -14.52176 -14.47386 -14.26519 -14.01066 -13.81157 -13.50293 -13.44778 -13.19178 -13.01277 -12.93161 -12.78895 -12.57075 -12.31516 -12.19113 -12.17512 -12.15109 -11.81831 -11.67712 -11.23520 -11.07927 -10.99954 -10.66586 -9.95167 -9.50962 -9.34519 -8.52549 -6.37160 0.07169 0.33809 0.93558 1.13351 1.46072 1.54169 1.57146 1.65839 1.83867 2.03132 2.25777 2.65094 2.82457 3.08179 3.30932 3.56804 3.69052 3.82677 3.87358 4.09962 4.17400 4.31096 4.42754 4.48580 4.52088 4.57231 4.60552 4.74502 4.82589 4.85687 4.88949 4.99325 5.02222 5.04748 5.05924 5.17044 5.23541 5.33423 5.36954 5.55471 5.77643 6.00133 6.05068 6.20627 6.29440 6.64370 6.92138 6.96919 7.02645 7.10247 8.39275 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020100 B = 0.003351 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.672694 B = 8354.244668 C = 9397.298405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.162 3.838 3 N -0.414 5.414 4 O 0.063 5.937 5 C 0.201 3.799 6 C 0.217 3.783 7 H 0.135 0.865 8 C -0.113 4.113 9 C -0.114 4.114 10 C 0.081 3.919 11 N -0.611 5.611 12 C 0.579 3.421 13 O -0.581 6.581 14 C -0.127 4.127 15 C -0.189 4.189 16 C -0.121 4.121 17 C -0.162 4.162 18 C 0.068 3.932 19 C -0.481 4.481 20 H 0.091 0.909 21 C 0.029 3.971 22 N -0.836 5.836 23 Si 0.987 3.013 24 H -0.261 1.261 25 H -0.277 1.277 26 H -0.253 1.253 27 C -0.210 4.210 28 N -0.499 5.499 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.286 0.714 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 -4.949 -15.243 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.111 4.111 3 N -0.127 5.127 4 O 0.010 5.990 5 C -0.019 4.019 6 C 0.112 3.888 7 H 0.152 0.848 8 C -0.151 4.151 9 C -0.152 4.152 10 C -0.040 4.040 11 N -0.345 5.345 12 C 0.372 3.628 13 O -0.463 6.463 14 C -0.130 4.130 15 C -0.210 4.210 16 C -0.139 4.139 17 C -0.182 4.182 18 C 0.065 3.935 19 C -0.511 4.511 20 H 0.109 0.891 21 C -0.185 4.185 22 N -0.463 5.463 23 Si 0.808 3.192 24 H -0.186 1.186 25 H -0.202 1.202 26 H -0.177 1.177 27 C -0.229 4.229 28 N -0.234 5.234 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.097 0.903 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.139 -4.391 -14.783 16.994 hybrid contribution 0.597 0.330 1.094 1.289 sum -6.542 -4.061 -13.689 15.706 Atomic orbital electron populations 1.20341 0.80007 1.06151 1.05146 1.26677 1.02231 0.83059 0.99087 1.74538 0.89689 1.25260 1.23262 1.85203 1.22487 1.25386 1.65914 1.29043 0.97397 0.82078 0.93418 1.21024 0.80237 0.94718 0.92776 0.84794 1.23026 0.95312 1.05087 0.91725 1.22796 0.95653 1.03478 0.93263 1.22887 0.81829 1.02535 0.96745 1.48505 1.09476 1.61286 1.15274 1.18494 0.88146 0.75537 0.80622 1.90669 1.21850 1.56842 1.76915 1.19422 0.93115 1.06280 0.94182 1.20604 0.97724 1.08775 0.93881 1.20904 0.93280 1.01189 0.98531 1.21907 0.94805 1.02535 0.98924 1.18018 0.94001 0.89454 0.91983 1.19853 0.90507 1.44577 0.96170 0.89057 1.26807 1.06074 0.91411 0.94172 1.69815 1.37000 1.35306 1.04193 0.85155 0.75245 0.80046 0.78730 1.18572 1.20216 1.17679 1.22936 0.90596 1.06132 1.03204 1.71775 0.99705 1.29959 1.21988 0.88831 0.88017 0.87098 0.89919 0.85254 0.86319 0.87448 0.89799 0.89357 0.88706 0.87009 0.86096 0.90349 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.15 10.51 71.24 0.75 -0.40 16 2 C 0.16 5.05 8.22 138.46 1.14 6.19 16 3 N -0.41 -14.93 12.16 -60.30 -0.73 -15.66 16 4 O 0.06 2.32 10.73 87.04 0.93 3.26 16 5 C 0.20 6.46 5.39 88.38 0.48 6.94 16 6 C 0.22 5.41 3.74 44.80 0.17 5.58 16 7 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 8 C -0.11 -1.63 6.50 32.07 0.21 -1.42 16 9 C -0.11 -1.41 6.95 31.78 0.22 -1.19 16 10 C 0.08 1.88 4.87 86.73 0.42 2.31 16 11 N -0.61 -19.04 3.24 -808.65 -2.62 -21.66 16 12 C 0.58 24.41 7.59 86.80 0.66 25.07 16 13 O -0.58 -27.98 14.54 8.36 0.12 -27.86 16 14 C -0.13 -5.84 5.87 -20.13 -0.12 -5.96 16 15 C -0.19 -9.21 9.60 22.70 0.22 -8.99 16 16 C -0.12 -5.84 10.01 22.18 0.22 -5.61 16 17 C -0.16 -8.35 8.70 22.77 0.20 -8.15 16 18 C 0.07 3.39 5.60 -21.32 -0.12 3.27 16 19 C -0.48 -23.19 9.08 23.47 0.21 -22.98 16 20 H 0.09 4.00 7.85 -2.91 -0.02 3.97 16 21 C 0.03 1.32 5.34 85.26 0.46 1.78 16 22 N -0.84 -41.43 10.46 21.83 0.23 -41.20 16 23 Si 0.99 34.98 29.56 68.60 2.03 37.00 16 24 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 25 H -0.28 -9.66 7.11 99.48 0.71 -8.95 16 26 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 27 C -0.21 -9.30 8.36 23.01 0.19 -9.10 16 28 N -0.50 -16.15 11.55 -303.18 -3.50 -19.65 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 33 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 2.08 6.73 -2.38 -0.02 2.06 16 37 H 0.09 2.22 6.75 -2.39 -0.02 2.21 16 38 H 0.09 4.60 7.65 -2.91 -0.02 4.57 16 39 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 40 H 0.12 6.50 5.84 -2.91 -0.02 6.48 16 41 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 42 H 0.17 6.06 2.74 -8.12 -0.02 6.04 16 Total: -1.00 -71.87 348.83 2.82 -69.05 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 1.06 Total: 29.40 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 5.30 Total: -12.68 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -6.62 Total: -98.17 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: 1.06 Total: -24.60 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.00 kcal Total: -71.87 2.82 -69.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286710972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.711 kcal (2) G-P(sol) polarization free energy of solvation -71.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds