Wall clock time and date at job start Tue Mar 31 2020 14:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38436 * 119.99654 * 2 1 4 4 N 1.32603 * 119.12945 * 179.97438 * 3 2 1 5 5 C 1.32103 * 120.96340 * 180.02562 * 4 3 2 6 6 C 1.50696 * 120.37904 * 179.97438 * 5 4 3 7 7 C 1.38833 * 119.24026 * 359.72056 * 5 4 3 8 8 C 1.39500 * 118.42135 * 0.54629 * 7 5 4 9 9 C 1.48382 * 120.50818 * 179.73261 * 8 7 5 10 10 O 1.21392 * 120.00044 * 359.71507 * 9 8 7 11 11 O 1.34641 * 120.00064 * 179.72092 * 9 8 7 12 12 C 1.45199 * 117.00139 * 179.97438 * 11 9 8 13 13 C 1.50692 * 109.47373 * 179.97438 * 12 11 9 14 14 C 1.38637 * 119.74941 * 269.72763 * 13 12 11 15 15 C 1.37624 * 120.24679 * 179.71733 * 14 13 12 16 16 C 1.40706 * 119.74538 * 0.57122 * 15 14 13 17 17 C 1.41401 * 120.24422 * 179.67956 * 16 15 14 18 18 H 1.08000 * 119.99958 * 204.40697 * 17 16 15 19 19 C 1.39940 * 119.99688 * 24.40559 * 17 16 15 20 20 N 1.30827 * 120.00177 * 17.84931 * 19 17 16 21 21 Si 1.86800 * 119.99832 * 197.84514 * 19 17 16 22 22 H 1.48496 * 109.47036 * 60.00706 * 21 19 17 23 23 H 1.48503 * 109.47267 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47523 * 300.00429 * 21 19 17 25 25 C 1.40722 * 119.51359 * 359.70368 * 16 15 14 26 26 C 1.37611 * 119.74425 * 359.97438 * 25 16 15 27 27 N 1.32252 * 119.13974 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.47158 * 300.00424 * 1 2 3 29 29 H 1.08998 * 109.46751 * 60.00382 * 1 2 3 30 30 H 1.08997 * 109.46729 * 180.02562 * 1 2 3 31 31 H 0.96995 * 120.00325 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47301 * 90.00237 * 6 5 4 33 33 H 1.09001 * 109.46991 * 210.00141 * 6 5 4 34 34 H 1.08998 * 109.46904 * 329.99856 * 6 5 4 35 35 H 1.08005 * 120.78767 * 180.29488 * 7 5 4 36 36 H 1.09002 * 109.46993 * 299.99940 * 12 11 9 37 37 H 1.08997 * 109.47310 * 59.99259 * 12 11 9 38 38 H 1.08000 * 119.87529 * 359.97438 * 14 13 12 39 39 H 1.08006 * 120.12392 * 180.27410 * 15 14 13 40 40 H 0.97000 * 120.00035 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.12885 * 179.97438 * 25 16 15 42 42 H 1.08003 * 119.87858 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1572 1.1989 0.0000 4 7 3.4830 1.1789 0.0005 5 6 4.1798 2.3012 0.0010 6 6 5.6862 2.2631 0.0022 7 6 3.5082 3.5163 -0.0049 8 6 2.1133 3.5040 0.0005 9 6 1.3487 4.7757 0.0006 10 8 1.9370 5.8376 0.0011 11 8 0.0025 4.7519 0.0001 12 6 -0.6795 6.0337 0.0008 13 6 -2.1697 5.8099 -0.0005 14 6 -2.8500 5.7144 -1.2047 15 6 -4.2100 5.5043 -1.2178 16 6 -4.9118 5.3984 -0.0029 17 6 -6.3103 5.1892 -0.0041 18 1 -6.9021 5.4908 0.8475 19 6 -6.9274 4.5915 -1.1087 20 7 -6.2121 3.9175 -1.9723 21 14 -8.7724 4.7560 -1.3502 22 1 -9.1293 6.1922 -1.4736 23 1 -9.1760 4.0374 -2.5855 24 1 -9.4787 4.1688 -0.1834 25 6 -4.2118 5.5026 1.2134 26 6 -2.8508 5.7061 1.2026 27 7 1.4787 2.3342 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9501 -0.8400 0.0004 32 1 6.0503 2.2539 -1.0252 33 1 6.0716 3.1436 0.5164 34 1 6.0265 1.3642 0.5163 35 1 4.0528 4.4490 -0.0094 36 1 -0.3968 6.5952 0.8912 37 1 -0.3962 6.5965 -0.8887 38 1 -2.3100 5.8012 -2.1360 39 1 -4.7373 5.4258 -2.1572 40 1 -6.6400 3.5029 -2.7378 41 1 -4.7406 5.4232 2.1517 42 1 -2.3114 5.7860 2.1348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286980295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:07 Heat of formation + Delta-G solvation = -10.770626 kcal Electronic energy + Delta-G solvation = -26160.120424 eV Core-core repulsion = 22298.278649 eV Total energy + Delta-G solvation = -3861.841775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.32305 -39.86331 -37.68211 -36.38563 -35.99485 -34.46181 -33.84395 -31.84810 -30.78639 -29.35806 -28.77368 -27.40639 -26.50756 -25.41233 -23.59592 -22.34136 -21.12308 -21.04254 -20.04841 -18.83780 -17.45502 -17.38395 -16.79946 -16.23958 -16.21186 -15.51174 -15.45600 -15.26949 -14.94066 -14.34636 -13.93722 -13.85548 -13.76934 -13.52660 -12.97923 -12.83892 -12.64723 -12.40007 -12.37561 -12.21382 -12.01437 -11.73577 -11.18804 -11.17236 -11.00343 -10.94017 -10.80026 -10.62838 -10.44842 -10.40249 -10.16884 -9.72420 -9.46271 -9.34671 -9.20895 -8.27762 -7.55073 -7.44150 -6.85962 -4.45835 0.40481 0.97677 2.34294 2.55712 2.67740 2.90384 3.01294 3.03155 3.04812 3.24629 3.75443 3.83272 3.85856 4.37480 4.46921 4.63271 4.84715 5.06970 5.18036 5.22131 5.23095 5.50233 5.56357 5.59379 5.60833 5.65337 5.69511 5.87633 6.01980 6.06131 6.26220 6.32571 6.56003 6.67747 6.82808 6.88294 6.97964 7.19441 7.23768 7.27594 7.52674 7.74205 7.89598 7.96364 8.02285 8.15271 8.20146 8.54614 8.79164 8.87725 10.07625 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.002635 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.170896 B =10625.183156 C =11779.223950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.699 5.699 3 C 0.564 3.436 4 N -0.557 5.557 5 C 0.218 3.782 6 C -0.104 4.104 7 C -0.234 4.234 8 C 0.199 3.801 9 C 0.515 3.485 10 O -0.501 6.501 11 O -0.320 6.320 12 C 0.132 3.868 13 C -0.235 4.235 14 C -0.073 4.073 15 C -0.171 4.171 16 C 0.119 3.881 17 C -0.456 4.456 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.784 5.784 21 Si 0.910 3.090 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.230 4.230 26 C -0.061 4.061 27 N -0.519 5.519 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.414 0.586 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.158 0.842 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.283 0.717 41 H 0.094 0.906 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.320 -6.035 1.468 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.336 5.336 3 C 0.206 3.794 4 N -0.281 5.281 5 C 0.068 3.932 6 C -0.161 4.161 7 C -0.260 4.260 8 C 0.051 3.949 9 C 0.357 3.643 10 O -0.389 6.389 11 O -0.235 6.235 12 C 0.060 3.940 13 C -0.236 4.236 14 C -0.092 4.092 15 C -0.190 4.190 16 C 0.117 3.883 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.409 5.409 21 Si 0.734 3.266 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.250 4.250 26 C -0.080 4.080 27 N -0.245 5.245 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.251 0.749 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.175 0.825 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.624 -6.675 1.248 17.036 hybrid contribution -0.304 0.434 -0.193 0.564 sum 15.320 -6.241 1.055 16.576 Atomic orbital electron populations 1.21613 0.77016 1.02185 1.03436 1.43913 1.06959 1.03472 1.79265 1.19227 0.84657 0.86743 0.88736 1.67623 1.06863 1.32151 1.21492 1.21439 0.97172 0.86722 0.87905 1.20793 0.87147 1.04282 1.03916 1.22379 0.93984 1.01004 1.08620 1.20345 0.90425 0.90272 0.93852 1.20764 0.82798 0.87302 0.73471 1.90809 1.71325 1.30914 1.45819 1.86916 1.17220 1.38196 1.81136 1.21875 0.90130 0.80860 1.01091 1.18632 0.90325 1.20477 0.94163 1.20535 0.94894 0.98725 0.95051 1.21284 0.92825 1.06083 0.98813 1.17678 0.93118 0.86598 0.90948 1.19645 0.92698 1.34248 1.01889 0.90211 1.25970 1.01039 0.92618 0.94770 1.69825 1.38469 1.21921 1.10660 0.86332 0.81962 0.79720 0.78554 1.18702 1.20246 1.18898 1.20954 0.93341 1.13575 0.97106 1.20386 0.94422 0.98003 0.95177 1.67956 1.40175 0.97044 1.19334 0.91665 0.91584 0.90492 0.74897 0.89390 0.89685 0.89797 0.82480 0.91803 0.91748 0.89342 0.86247 0.90587 0.88733 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.12 10.67 59.85 0.64 1.76 16 2 N -0.70 -7.93 5.86 -69.14 -0.41 -8.33 16 3 C 0.56 7.99 8.42 -322.93 -2.72 5.27 16 4 N -0.56 -7.11 10.38 -10.16 -0.11 -7.22 16 5 C 0.22 2.42 6.83 -82.26 -0.56 1.86 16 6 C -0.10 -0.68 10.21 36.00 0.37 -0.31 16 7 C -0.23 -2.92 9.40 -38.89 -0.37 -3.29 16 8 C 0.20 3.15 6.79 -82.68 -0.56 2.59 16 9 C 0.51 9.12 7.97 34.91 0.28 9.40 16 10 O -0.50 -9.07 16.21 -19.18 -0.31 -9.38 16 11 O -0.32 -6.36 10.06 -40.33 -0.41 -6.76 16 12 C 0.13 2.56 5.59 36.00 0.20 2.76 16 13 C -0.23 -5.24 5.54 -104.33 -0.58 -5.82 16 14 C -0.07 -1.73 9.67 -39.66 -0.38 -2.11 16 15 C -0.17 -4.39 8.70 -38.87 -0.34 -4.73 16 16 C 0.12 3.13 5.57 -106.82 -0.60 2.54 16 17 C -0.46 -11.81 9.05 -37.74 -0.34 -12.15 16 18 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 19 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 20 N -0.78 -19.81 10.95 55.55 0.61 -19.20 16 21 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 25 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 26 C -0.06 -1.39 9.67 -39.66 -0.38 -1.77 16 27 N -0.52 -8.51 9.39 -10.51 -0.10 -8.61 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.41 3.59 8.94 -40.82 -0.37 3.22 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.16 1.67 7.73 -52.48 -0.41 1.27 16 36 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 37 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 38 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 39 H 0.12 3.15 6.16 -52.48 -0.32 2.82 16 40 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 41 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -30.20 370.94 -11.26 -41.46 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.28 Total: 7.61 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -5.81 Total: -8.24 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.00 Total: -43.36 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.72 Total: -16.14 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.20 -11.26 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286980295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.687 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds