Wall clock time and date at job start Tue Mar 31 2020 14:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38436 * 119.99654 * 2 1 4 4 N 1.32603 * 119.12945 * 179.97438 * 3 2 1 5 5 C 1.32103 * 120.96340 * 180.02562 * 4 3 2 6 6 C 1.50696 * 120.37904 * 179.97438 * 5 4 3 7 7 C 1.38833 * 119.24026 * 359.72056 * 5 4 3 8 8 C 1.39500 * 118.42135 * 0.54629 * 7 5 4 9 9 C 1.48382 * 120.50818 * 179.73261 * 8 7 5 10 10 O 1.21392 * 120.00044 * 359.71507 * 9 8 7 11 11 O 1.34641 * 120.00064 * 179.72092 * 9 8 7 12 12 C 1.45199 * 117.00139 * 179.97438 * 11 9 8 13 13 C 1.50692 * 109.47373 * 179.97438 * 12 11 9 14 14 C 1.38637 * 119.74941 * 269.72763 * 13 12 11 15 15 C 1.37624 * 120.24679 * 179.71733 * 14 13 12 16 16 C 1.40706 * 119.74538 * 0.57122 * 15 14 13 17 17 C 1.41401 * 120.24422 * 179.67956 * 16 15 14 18 18 H 1.08000 * 119.99958 * 204.40697 * 17 16 15 19 19 C 1.39940 * 119.99688 * 24.40559 * 17 16 15 20 20 N 1.30827 * 120.00177 * 17.84931 * 19 17 16 21 21 Si 1.86800 * 119.99832 * 197.84514 * 19 17 16 22 22 H 1.48496 * 109.47036 * 60.00706 * 21 19 17 23 23 H 1.48503 * 109.47267 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47523 * 300.00429 * 21 19 17 25 25 C 1.40722 * 119.51359 * 359.70368 * 16 15 14 26 26 C 1.37611 * 119.74425 * 359.97438 * 25 16 15 27 27 N 1.32252 * 119.13974 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.47158 * 300.00424 * 1 2 3 29 29 H 1.08998 * 109.46751 * 60.00382 * 1 2 3 30 30 H 1.08997 * 109.46729 * 180.02562 * 1 2 3 31 31 H 0.96995 * 120.00325 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47301 * 90.00237 * 6 5 4 33 33 H 1.09001 * 109.46991 * 210.00141 * 6 5 4 34 34 H 1.08998 * 109.46904 * 329.99856 * 6 5 4 35 35 H 1.08005 * 120.78767 * 180.29488 * 7 5 4 36 36 H 1.09002 * 109.46993 * 299.99940 * 12 11 9 37 37 H 1.08997 * 109.47310 * 59.99259 * 12 11 9 38 38 H 1.08000 * 119.87529 * 359.97438 * 14 13 12 39 39 H 1.08006 * 120.12392 * 180.27410 * 15 14 13 40 40 H 0.97000 * 120.00035 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.12885 * 179.97438 * 25 16 15 42 42 H 1.08003 * 119.87858 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1572 1.1989 0.0000 4 7 3.4830 1.1789 0.0005 5 6 4.1798 2.3012 0.0010 6 6 5.6862 2.2631 0.0022 7 6 3.5082 3.5163 -0.0049 8 6 2.1133 3.5040 0.0005 9 6 1.3487 4.7757 0.0006 10 8 1.9370 5.8376 0.0011 11 8 0.0025 4.7519 0.0001 12 6 -0.6795 6.0337 0.0008 13 6 -2.1697 5.8099 -0.0005 14 6 -2.8500 5.7144 -1.2047 15 6 -4.2100 5.5043 -1.2178 16 6 -4.9118 5.3984 -0.0029 17 6 -6.3103 5.1892 -0.0041 18 1 -6.9021 5.4908 0.8475 19 6 -6.9274 4.5915 -1.1087 20 7 -6.2121 3.9175 -1.9723 21 14 -8.7724 4.7560 -1.3502 22 1 -9.1293 6.1922 -1.4736 23 1 -9.1760 4.0374 -2.5855 24 1 -9.4787 4.1688 -0.1834 25 6 -4.2118 5.5026 1.2134 26 6 -2.8508 5.7061 1.2026 27 7 1.4787 2.3342 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9501 -0.8400 0.0004 32 1 6.0503 2.2539 -1.0252 33 1 6.0716 3.1436 0.5164 34 1 6.0265 1.3642 0.5163 35 1 4.0528 4.4490 -0.0094 36 1 -0.3968 6.5952 0.8912 37 1 -0.3962 6.5965 -0.8887 38 1 -2.3100 5.8012 -2.1360 39 1 -4.7373 5.4258 -2.1572 40 1 -6.6400 3.5029 -2.7378 41 1 -4.7406 5.4232 2.1517 42 1 -2.3114 5.7860 2.1348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286980295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:06 Heat of formation + Delta-G solvation = -25.606178 kcal Electronic energy + Delta-G solvation = -26160.763742 eV Core-core repulsion = 22298.278649 eV Total energy + Delta-G solvation = -3862.485093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.39372 -41.23710 -39.49239 -37.70760 -37.11412 -35.72897 -35.42883 -32.79757 -32.56180 -31.24244 -29.64629 -29.06536 -27.42913 -26.73732 -25.22179 -23.32081 -22.96745 -22.32593 -21.83827 -20.00501 -19.27571 -18.61374 -17.96505 -17.64242 -17.51392 -17.12762 -16.53530 -16.48395 -15.96187 -15.82620 -15.62119 -15.48260 -14.72189 -14.52203 -14.30298 -14.09973 -13.99648 -13.85986 -13.65084 -13.54725 -13.15283 -13.04536 -12.86630 -12.71075 -12.62718 -12.23132 -12.16268 -12.02798 -11.87331 -11.73616 -11.52160 -11.30252 -11.28745 -11.05194 -10.40337 -9.44912 -9.34436 -9.24439 -8.69180 -6.40447 -0.72410 0.02704 0.67844 1.10405 1.27244 1.36389 1.40314 1.50638 1.64830 1.82509 2.18967 2.65135 2.70246 2.87497 3.39959 3.53400 3.73184 3.84206 4.03655 4.08867 4.14227 4.29791 4.41349 4.46122 4.50268 4.53361 4.61936 4.79255 4.82092 4.87871 4.99200 4.99754 5.10868 5.21301 5.29876 5.31167 5.38825 5.62756 5.64070 5.83256 5.87513 6.04488 6.13305 6.30826 6.35478 6.52393 6.63242 6.87518 6.96242 7.16563 8.27222 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.002635 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.170896 B =10625.183156 C =11779.223950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.690 5.690 3 C 0.549 3.451 4 N -0.557 5.557 5 C 0.223 3.777 6 C -0.100 4.100 7 C -0.223 4.223 8 C 0.171 3.829 9 C 0.517 3.483 10 O -0.507 6.507 11 O -0.340 6.340 12 C 0.136 3.864 13 C -0.231 4.231 14 C -0.079 4.079 15 C -0.194 4.194 16 C 0.089 3.911 17 C -0.492 4.492 18 H 0.081 0.919 19 C 0.035 3.965 20 N -0.817 5.817 21 Si 0.985 3.015 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.258 1.258 25 C -0.245 4.245 26 C -0.063 4.063 27 N -0.557 5.557 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.114 0.886 31 H 0.427 0.573 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.177 0.823 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.291 0.709 41 H 0.103 0.897 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.255 -6.583 1.718 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.328 5.328 3 C 0.191 3.809 4 N -0.281 5.281 5 C 0.072 3.928 6 C -0.157 4.157 7 C -0.249 4.249 8 C 0.025 3.975 9 C 0.360 3.640 10 O -0.396 6.396 11 O -0.255 6.255 12 C 0.064 3.936 13 C -0.232 4.232 14 C -0.097 4.097 15 C -0.213 4.213 16 C 0.086 3.914 17 C -0.520 4.520 18 H 0.099 0.901 19 C -0.181 4.181 20 N -0.442 5.442 21 Si 0.805 3.195 22 H -0.184 1.184 23 H -0.191 1.191 24 H -0.182 1.182 25 C -0.265 4.265 26 C -0.082 4.082 27 N -0.284 5.284 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.132 0.868 31 H 0.267 0.733 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.195 0.805 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.582 -7.236 1.506 19.072 hybrid contribution -0.666 0.570 -0.247 0.911 sum 16.916 -6.666 1.259 18.226 Atomic orbital electron populations 1.21588 0.76993 1.03945 1.01331 1.43956 1.07018 1.03358 1.78469 1.19541 0.85398 0.86917 0.89012 1.67792 1.06091 1.32790 1.21419 1.22262 0.99244 0.85661 0.85610 1.20981 0.83419 1.05867 1.05470 1.22658 0.92548 1.02541 1.07159 1.20284 0.91485 0.89391 0.96301 1.21082 0.81908 0.88229 0.72792 1.90787 1.71117 1.31386 1.46290 1.86865 1.18801 1.38027 1.81795 1.21773 0.88246 0.81079 1.02482 1.18949 0.92208 1.18463 0.93582 1.20767 0.94330 0.98178 0.96467 1.21260 0.93837 1.07972 0.98258 1.18037 0.93964 0.87545 0.91814 1.19910 0.93054 1.35913 1.03164 0.90108 1.26844 1.05899 0.91523 0.93883 1.69879 1.40620 1.22469 1.11267 0.85206 0.75645 0.79740 0.78878 1.18385 1.19129 1.18185 1.21167 0.94315 1.14025 0.96949 1.20699 0.93960 0.96954 0.96551 1.67835 1.41420 0.97868 1.21260 0.93583 0.93834 0.86789 0.73340 0.87546 0.87378 0.88921 0.80513 0.90148 0.90679 0.87748 0.87732 0.89854 0.87874 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.32 10.67 127.77 1.36 3.69 16 2 N -0.69 -15.18 5.86 -372.65 -2.18 -17.37 16 3 C 0.55 15.24 8.42 261.53 2.20 17.44 16 4 N -0.56 -13.23 10.38 -186.05 -1.93 -15.16 16 5 C 0.22 4.39 6.83 42.66 0.29 4.68 16 6 C -0.10 -0.92 10.21 71.23 0.73 -0.20 16 7 C -0.22 -5.14 9.40 22.72 0.21 -4.93 16 8 C 0.17 5.34 6.79 41.96 0.28 5.62 16 9 C 0.52 18.09 7.97 70.52 0.56 18.65 16 10 O -0.51 -17.79 16.21 20.18 0.33 -17.47 16 11 O -0.34 -13.46 10.06 -55.49 -0.56 -14.01 16 12 C 0.14 5.16 5.59 71.23 0.40 5.56 16 13 C -0.23 -10.29 5.54 -19.67 -0.11 -10.40 16 14 C -0.08 -3.79 9.67 22.22 0.21 -3.57 16 15 C -0.19 -10.37 8.70 22.73 0.20 -10.17 16 16 C 0.09 4.85 5.57 -21.29 -0.12 4.73 16 17 C -0.49 -26.34 9.05 23.46 0.21 -26.13 16 18 H 0.08 4.13 7.91 -2.91 -0.02 4.10 16 19 C 0.03 1.73 5.14 85.25 0.44 2.17 16 20 N -0.82 -42.52 10.95 21.83 0.24 -42.28 16 21 Si 0.99 37.48 29.59 68.60 2.03 39.51 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 23 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 24 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 25 C -0.25 -12.18 9.80 22.73 0.22 -11.96 16 26 C -0.06 -2.86 9.67 22.22 0.21 -2.64 16 27 N -0.56 -18.36 9.39 -187.15 -1.76 -20.12 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.43 6.81 8.94 -92.71 -0.83 5.98 16 32 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 0.56 8.10 -2.39 -0.02 0.54 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.18 3.27 7.73 -2.91 -0.02 3.25 16 36 H 0.08 2.77 8.08 -2.39 -0.02 2.75 16 37 H 0.07 2.67 8.07 -2.39 -0.02 2.65 16 38 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.10 5.80 6.16 -2.91 -0.02 5.78 16 40 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 41 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 42 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -67.71 370.94 3.72 -64.00 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.23 Total: 30.37 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 7.32 Total: -7.47 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -5.63 Total: -94.94 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.23 Total: -31.48 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -67.71 3.72 -64.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286980295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.390 kcal (2) G-P(sol) polarization free energy of solvation -67.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds