Wall clock time and date at job start Tue Mar 31 2020 14:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38614 * 120.41336 * 2 1 4 4 C 1.38613 * 118.53870 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.40480 * 180.02562 * 4 3 2 6 6 N 1.32273 * 119.18304 * 359.97438 * 4 3 2 7 7 C 1.32401 * 120.75280 * 0.02562 * 6 4 3 8 8 N 1.38943 * 119.20429 * 180.02562 * 7 6 4 9 9 C 1.34778 * 120.00001 * 180.02562 * 8 7 6 10 10 O 1.21265 * 119.99800 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99630 * 179.97438 * 9 8 7 12 12 C 1.50706 * 109.46614 * 179.97438 * 11 9 8 13 13 C 1.38297 * 119.93613 * 269.72656 * 12 11 9 14 14 C 1.38096 * 120.07372 * 179.73066 * 13 12 11 15 15 C 1.38880 * 119.92462 * 0.56583 * 14 13 12 16 16 O 1.35754 * 120.06923 * 179.68721 * 15 14 13 17 17 C 1.34830 * 117.00519 * 174.48953 * 16 15 14 18 18 H 1.07997 * 119.99521 * 5.05487 * 17 16 15 19 19 C 1.38646 * 120.00408 * 185.05412 * 17 16 15 20 20 N 1.31558 * 120.00026 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00100 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47107 * 60.00340 * 21 19 17 23 23 H 1.48504 * 109.47280 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47177 * 299.99997 * 21 19 17 25 25 C 1.38879 * 119.86449 * 359.70810 * 15 14 13 26 26 C 1.38096 * 119.93284 * 0.02562 * 25 15 14 27 27 N 1.32285 * 120.40564 * 179.72061 * 2 1 3 28 28 H 1.09004 * 109.47457 * 89.99666 * 1 2 3 29 29 H 1.08995 * 109.47672 * 209.99958 * 1 2 3 30 30 H 1.09004 * 109.47248 * 330.00356 * 1 2 3 31 31 H 1.07998 * 120.72953 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.47065 * 90.00163 * 5 4 3 33 33 H 1.09002 * 109.46736 * 209.99694 * 5 4 3 34 34 H 1.08990 * 109.47394 * 329.99529 * 5 4 3 35 35 H 0.97002 * 119.99745 * 0.02562 * 8 7 6 36 36 H 1.08993 * 109.47537 * 300.00279 * 11 9 8 37 37 H 1.08999 * 109.47011 * 60.00697 * 11 9 8 38 38 H 1.08007 * 119.96295 * 359.97438 * 13 12 11 39 39 H 1.07994 * 120.03812 * 180.27691 * 14 13 12 40 40 H 0.96997 * 120.00442 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.03499 * 179.97438 * 25 15 14 42 42 H 1.07992 * 119.96985 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2086 1.1954 0.0000 4 6 3.5940 1.1501 -0.0005 5 6 4.3988 2.4242 0.0000 6 7 4.2009 -0.0253 -0.0005 7 6 3.5004 -1.1488 -0.0005 8 7 4.1710 -2.3657 0.0001 9 6 3.4740 -3.5193 -0.0004 10 8 2.2616 -3.4950 -0.0009 11 6 4.2014 -4.8391 -0.0004 12 6 3.1993 -5.9648 -0.0004 13 6 2.7448 -6.4840 1.1981 14 6 1.8224 -7.5118 1.2014 15 6 1.3602 -8.0319 -0.0005 16 8 0.4583 -9.0465 -0.0006 17 6 -0.0346 -9.4274 -1.1964 18 1 0.3505 -8.9870 -2.1042 19 6 -1.0358 -10.3844 -1.2606 20 7 -1.5045 -10.9212 -0.1548 21 14 -1.7191 -10.9115 -2.9173 22 1 -0.6255 -11.4802 -3.7455 23 1 -2.7714 -11.9394 -2.7144 24 1 -2.3031 -9.7344 -3.6091 25 6 1.8229 -7.5121 -1.2024 26 6 2.7411 -6.4806 -1.1991 27 7 2.1764 -1.1409 0.0056 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6874 2.1413 -0.0004 32 1 4.5933 2.7306 1.0278 33 1 5.3451 2.2563 -0.5143 34 1 3.8404 3.2069 -0.5131 35 1 5.1408 -2.3850 0.0008 36 1 4.8271 -4.9091 -0.8901 37 1 4.8263 -4.9095 0.8898 38 1 3.1086 -6.0827 2.1325 39 1 1.4645 -7.9139 2.1377 40 1 -2.2052 -11.5905 -0.1997 41 1 1.4656 -7.9147 -2.1387 42 1 3.1016 -6.0763 -2.1333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291157415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:24 Heat of formation + Delta-G solvation = 23.268544 kcal Electronic energy + Delta-G solvation = -26021.590567 eV Core-core repulsion = 22161.224841 eV Total energy + Delta-G solvation = -3860.365726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.48524 -39.71425 -38.75946 -36.55899 -35.27736 -34.93849 -32.59851 -32.22645 -31.13253 -30.11854 -29.61089 -27.73006 -26.86943 -25.22085 -23.75920 -22.27016 -21.94246 -21.02460 -20.02701 -18.24257 -17.94471 -17.50965 -16.88565 -16.42343 -16.02027 -15.74344 -15.05465 -14.71114 -14.45192 -14.28140 -14.05161 -13.80077 -13.72470 -13.55353 -13.36038 -13.31840 -13.01828 -12.82115 -12.66872 -12.47038 -12.32768 -11.85815 -11.51629 -11.32030 -11.21701 -10.83575 -10.74313 -10.72866 -10.61215 -10.45286 -10.40998 -9.86135 -9.29550 -9.08714 -8.78963 -8.78592 -8.11630 -7.14200 -6.41256 -3.99821 0.77274 0.93075 2.16034 2.29015 2.60402 2.67598 3.15594 3.17482 3.19765 3.68950 3.80043 4.00108 4.10845 4.31137 4.59774 4.85654 4.89249 4.96252 5.04046 5.11488 5.13751 5.24527 5.27564 5.29521 5.34700 5.39233 5.46450 5.60078 5.64796 5.75492 5.76942 5.87576 5.96672 6.25109 6.41161 6.45079 6.72470 6.88499 6.95572 7.02111 7.09755 7.27276 7.39569 7.48362 7.86747 8.03886 8.04720 8.24585 9.04272 9.74688 10.76734 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.002330 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.454823 B =12014.240682 C =12732.837600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.207 3.793 3 C -0.270 4.270 4 C 0.203 3.797 5 C -0.104 4.104 6 N -0.561 5.561 7 C 0.548 3.452 8 N -0.647 5.647 9 C 0.499 3.501 10 O -0.443 6.443 11 C -0.072 4.072 12 C -0.175 4.175 13 C -0.057 4.057 14 C -0.191 4.191 15 C 0.158 3.842 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.232 4.232 26 C -0.054 4.054 27 N -0.506 5.506 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.420 0.580 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.270 0.730 41 H 0.127 0.873 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.977 24.283 -0.240 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.059 3.941 3 C -0.294 4.294 4 C 0.057 3.943 5 C -0.161 4.161 6 N -0.283 5.283 7 C 0.192 3.808 8 N -0.298 5.298 9 C 0.284 3.716 10 O -0.307 6.307 11 C -0.113 4.113 12 C -0.176 4.176 13 C -0.075 4.075 14 C -0.211 4.211 15 C 0.104 3.896 16 O -0.080 6.080 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.252 4.252 26 C -0.072 4.072 27 N -0.228 5.228 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.258 0.742 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.256 22.925 0.015 25.539 hybrid contribution -0.188 0.601 -0.901 1.099 sum 11.067 23.526 -0.886 26.014 Atomic orbital electron populations 1.20797 0.87623 1.04179 1.03839 1.21745 0.97689 0.87290 0.87380 1.22394 0.95454 1.00457 1.11108 1.21400 0.91462 0.92831 0.88655 1.20765 1.00106 0.91585 1.03650 1.67606 1.41307 0.97743 1.21686 1.19533 0.85662 0.85898 0.89714 1.43613 1.11122 1.02376 1.72738 1.21505 0.88960 0.84524 0.76584 1.90863 1.13172 1.85880 1.40813 1.20397 0.97616 0.88864 1.04376 1.18576 1.04666 1.00556 0.93832 1.20399 0.95736 0.95143 0.96270 1.20148 1.03392 1.01297 0.96227 1.19390 0.89436 0.87469 0.93283 1.83976 1.49173 1.41938 1.32961 1.21279 1.19378 1.22953 0.83111 0.89125 1.25285 0.95838 0.96152 0.99269 1.70030 1.26526 1.26224 1.27018 0.85784 0.78788 0.78675 0.80200 1.19524 1.20294 1.19497 1.21097 1.03598 1.02069 0.98415 1.20508 0.95558 0.95032 0.96124 1.68395 1.06772 1.29748 1.17858 0.89549 0.89422 0.90176 0.83755 0.89683 0.89989 0.90026 0.74248 0.88512 0.88475 0.87342 0.86513 0.92001 0.85569 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.22 36.00 0.37 -0.64 16 2 C 0.21 2.52 6.82 -82.26 -0.56 1.96 16 3 C -0.27 -2.55 9.53 -39.30 -0.37 -2.93 16 4 C 0.20 2.00 6.82 -82.26 -0.56 1.44 16 5 C -0.10 -0.58 10.22 36.01 0.37 -0.21 16 6 N -0.56 -6.82 10.39 -10.06 -0.10 -6.93 16 7 C 0.55 7.75 8.38 -322.26 -2.70 5.05 16 8 N -0.65 -7.91 5.40 -13.07 -0.07 -7.98 16 9 C 0.50 7.34 7.78 -10.99 -0.09 7.26 16 10 O -0.44 -8.69 14.23 5.57 0.08 -8.61 16 11 C -0.07 -0.90 5.83 -29.03 -0.17 -1.07 16 12 C -0.17 -3.05 4.38 -104.57 -0.46 -3.51 16 13 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 14 C -0.19 -4.22 9.99 -39.40 -0.39 -4.61 16 15 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 16 O -0.18 -5.19 9.76 0.04 0.00 -5.19 16 17 C -0.39 -11.19 9.49 30.88 0.29 -10.89 16 18 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 21 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 25 C -0.23 -5.26 9.17 -39.40 -0.36 -5.62 16 26 C -0.05 -1.03 9.69 -39.61 -0.38 -1.41 16 27 N -0.51 -7.92 7.81 -10.06 -0.08 -8.00 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 35 H 0.42 3.54 8.81 -40.82 -0.36 3.18 16 36 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 42 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -37.04 367.41 -9.79 -46.83 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.13 Total: 5.35 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -5.76 Total: -11.94 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.50 Total: -47.90 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.80 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.04 -9.79 -46.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291157415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.102 kcal (2) G-P(sol) polarization free energy of solvation -37.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds