Wall clock time and date at job start Tue Mar 31 2020 14:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38614 * 120.41336 * 2 1 4 4 C 1.38613 * 118.53870 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.40480 * 180.02562 * 4 3 2 6 6 N 1.32273 * 119.18304 * 359.97438 * 4 3 2 7 7 C 1.32401 * 120.75280 * 0.02562 * 6 4 3 8 8 N 1.38943 * 119.20429 * 180.02562 * 7 6 4 9 9 C 1.34778 * 120.00001 * 180.02562 * 8 7 6 10 10 O 1.21265 * 119.99800 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99630 * 179.97438 * 9 8 7 12 12 C 1.50706 * 109.46614 * 179.97438 * 11 9 8 13 13 C 1.38297 * 119.93613 * 269.72656 * 12 11 9 14 14 C 1.38096 * 120.07372 * 179.73066 * 13 12 11 15 15 C 1.38880 * 119.92462 * 0.56583 * 14 13 12 16 16 O 1.35754 * 120.06923 * 179.68721 * 15 14 13 17 17 C 1.34830 * 117.00519 * 174.48953 * 16 15 14 18 18 H 1.07997 * 119.99521 * 5.05487 * 17 16 15 19 19 C 1.38646 * 120.00408 * 185.05412 * 17 16 15 20 20 N 1.31558 * 120.00026 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00100 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47107 * 60.00340 * 21 19 17 23 23 H 1.48504 * 109.47280 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47177 * 299.99997 * 21 19 17 25 25 C 1.38879 * 119.86449 * 359.70810 * 15 14 13 26 26 C 1.38096 * 119.93284 * 0.02562 * 25 15 14 27 27 N 1.32285 * 120.40564 * 179.72061 * 2 1 3 28 28 H 1.09004 * 109.47457 * 89.99666 * 1 2 3 29 29 H 1.08995 * 109.47672 * 209.99958 * 1 2 3 30 30 H 1.09004 * 109.47248 * 330.00356 * 1 2 3 31 31 H 1.07998 * 120.72953 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.47065 * 90.00163 * 5 4 3 33 33 H 1.09002 * 109.46736 * 209.99694 * 5 4 3 34 34 H 1.08990 * 109.47394 * 329.99529 * 5 4 3 35 35 H 0.97002 * 119.99745 * 0.02562 * 8 7 6 36 36 H 1.08993 * 109.47537 * 300.00279 * 11 9 8 37 37 H 1.08999 * 109.47011 * 60.00697 * 11 9 8 38 38 H 1.08007 * 119.96295 * 359.97438 * 13 12 11 39 39 H 1.07994 * 120.03812 * 180.27691 * 14 13 12 40 40 H 0.96997 * 120.00442 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.03499 * 179.97438 * 25 15 14 42 42 H 1.07992 * 119.96985 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2086 1.1954 0.0000 4 6 3.5940 1.1501 -0.0005 5 6 4.3988 2.4242 0.0000 6 7 4.2009 -0.0253 -0.0005 7 6 3.5004 -1.1488 -0.0005 8 7 4.1710 -2.3657 0.0001 9 6 3.4740 -3.5193 -0.0004 10 8 2.2616 -3.4950 -0.0009 11 6 4.2014 -4.8391 -0.0004 12 6 3.1993 -5.9648 -0.0004 13 6 2.7448 -6.4840 1.1981 14 6 1.8224 -7.5118 1.2014 15 6 1.3602 -8.0319 -0.0005 16 8 0.4583 -9.0465 -0.0006 17 6 -0.0346 -9.4274 -1.1964 18 1 0.3505 -8.9870 -2.1042 19 6 -1.0358 -10.3844 -1.2606 20 7 -1.5045 -10.9212 -0.1548 21 14 -1.7191 -10.9115 -2.9173 22 1 -0.6255 -11.4802 -3.7455 23 1 -2.7714 -11.9394 -2.7144 24 1 -2.3031 -9.7344 -3.6091 25 6 1.8229 -7.5121 -1.2024 26 6 2.7411 -6.4806 -1.1991 27 7 2.1764 -1.1409 0.0056 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6874 2.1413 -0.0004 32 1 4.5933 2.7306 1.0278 33 1 5.3451 2.2563 -0.5143 34 1 3.8404 3.2069 -0.5131 35 1 5.1408 -2.3850 0.0008 36 1 4.8271 -4.9091 -0.8901 37 1 4.8263 -4.9095 0.8898 38 1 3.1086 -6.0827 2.1325 39 1 1.4645 -7.9139 2.1377 40 1 -2.2052 -11.5905 -0.1997 41 1 1.4656 -7.9147 -2.1387 42 1 3.1016 -6.0763 -2.1333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291157415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:23 Heat of formation + Delta-G solvation = -0.514610 kcal Electronic energy + Delta-G solvation = -26022.621882 eV Core-core repulsion = 22161.224841 eV Total energy + Delta-G solvation = -3861.397041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37489 -41.02741 -40.34058 -38.26507 -36.31866 -35.74360 -34.41318 -33.43198 -32.45544 -31.78442 -30.35055 -28.54705 -28.21374 -27.13033 -24.80779 -23.64726 -23.12063 -22.43563 -21.18959 -19.85758 -19.21644 -18.77375 -18.45211 -17.43141 -17.03421 -16.48863 -16.43851 -16.38745 -16.01112 -15.65520 -15.52491 -15.23657 -14.90499 -14.67509 -14.42121 -14.31995 -14.17689 -13.99356 -13.71392 -13.56227 -13.33305 -12.97346 -12.96192 -12.81704 -12.48135 -12.34114 -12.28899 -12.14756 -12.12564 -11.65913 -11.29867 -11.18948 -11.00078 -10.77546 -10.02202 -9.77058 -9.66397 -8.92451 -8.47718 -6.16054 -0.09859 0.12281 0.61100 0.62599 1.33091 1.43485 1.49844 1.58609 1.62657 2.17245 2.80092 2.81387 3.02405 3.13874 3.41275 3.51337 3.55672 3.79327 4.04225 4.09882 4.14262 4.19046 4.33851 4.46165 4.46593 4.58448 4.65715 4.67377 4.70821 4.78774 4.79422 4.87308 4.92763 5.07412 5.13613 5.14715 5.21065 5.29382 5.55018 5.59231 5.70942 5.75806 6.02157 6.05594 6.16198 6.24268 6.96495 7.05567 7.32746 7.77585 8.75431 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.002330 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.454823 B =12014.240682 C =12732.837600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.178 3.822 3 C -0.255 4.255 4 C 0.192 3.808 5 C -0.099 4.099 6 N -0.564 5.564 7 C 0.522 3.478 8 N -0.633 5.633 9 C 0.505 3.495 10 O -0.504 6.504 11 C -0.068 4.068 12 C -0.149 4.149 13 C -0.055 4.055 14 C -0.207 4.207 15 C 0.114 3.886 16 O -0.233 6.233 17 C -0.415 4.415 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.255 1.255 23 H -0.270 1.270 24 H -0.260 1.260 25 C -0.244 4.244 26 C -0.057 4.057 27 N -0.553 5.553 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.184 0.816 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.437 0.563 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.112 0.888 40 H 0.273 0.727 41 H 0.118 0.882 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.666 28.160 -1.319 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.033 3.967 3 C -0.278 4.278 4 C 0.046 3.954 5 C -0.156 4.156 6 N -0.287 5.287 7 C 0.166 3.834 8 N -0.286 5.286 9 C 0.292 3.708 10 O -0.372 6.372 11 C -0.107 4.107 12 C -0.150 4.150 13 C -0.072 4.072 14 C -0.226 4.226 15 C 0.064 3.936 16 O -0.139 6.139 17 C -0.491 4.491 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.179 1.179 23 H -0.194 1.194 24 H -0.185 1.185 25 C -0.264 4.264 26 C -0.075 4.075 27 N -0.276 5.276 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.201 0.799 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.278 0.722 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.135 0.865 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.031 26.885 -1.058 30.344 hybrid contribution -0.758 -0.190 -0.459 0.906 sum 13.273 26.694 -1.517 29.851 Atomic orbital electron populations 1.20850 0.86469 1.04457 1.04263 1.22255 0.98791 0.87701 0.87995 1.22789 0.95483 1.00944 1.08628 1.22239 0.92356 0.93497 0.87334 1.20899 0.99852 0.89913 1.04917 1.67711 1.41244 0.98000 1.21791 1.19770 0.85742 0.86864 0.91058 1.43337 1.11836 1.01505 1.71903 1.21737 0.88252 0.85598 0.75243 1.90867 1.15647 1.86768 1.43961 1.20526 0.96422 0.85240 1.08490 1.19177 1.03178 1.00100 0.92540 1.20873 0.94194 0.93501 0.98680 1.20432 1.04458 1.02445 0.95263 1.19946 0.90107 0.88198 0.95384 1.83937 1.51779 1.44688 1.33531 1.21776 1.20105 1.23593 0.83609 0.88286 1.26620 0.95820 0.95856 1.03883 1.70181 1.28016 1.27824 1.29874 0.84643 0.78333 0.78514 0.74671 1.17897 1.19409 1.18470 1.21221 1.04677 1.03239 0.97228 1.20932 0.94337 0.93690 0.98543 1.68330 1.07942 1.31904 1.19415 0.89005 0.92155 0.86802 0.79910 0.88220 0.89900 0.87428 0.72183 0.84503 0.84277 0.83550 0.87001 0.91815 0.86471 0.84386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 10.22 71.23 0.73 -1.14 16 2 C 0.18 4.16 6.82 42.58 0.29 4.45 16 3 C -0.26 -4.08 9.53 22.45 0.21 -3.87 16 4 C 0.19 3.21 6.82 42.58 0.29 3.50 16 5 C -0.10 -0.70 10.22 71.24 0.73 0.02 16 6 N -0.56 -12.52 10.39 -185.73 -1.93 -14.45 16 7 C 0.52 14.05 8.38 261.29 2.19 16.24 16 8 N -0.63 -13.94 5.40 -313.66 -1.69 -15.64 16 9 C 0.50 13.59 7.78 87.66 0.68 14.27 16 10 O -0.50 -19.46 14.23 -2.98 -0.04 -19.50 16 11 C -0.07 -1.36 5.83 29.10 0.17 -1.19 16 12 C -0.15 -4.79 4.38 -19.83 -0.09 -4.88 16 13 C -0.05 -1.95 9.69 22.25 0.22 -1.73 16 14 C -0.21 -9.44 9.99 22.39 0.22 -9.21 16 15 C 0.11 6.04 6.65 22.58 0.15 6.19 16 16 O -0.23 -14.71 9.76 -22.78 -0.22 -14.93 16 17 C -0.41 -25.25 9.49 67.92 0.64 -24.61 16 18 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 19 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 20 N -0.92 -58.31 13.67 21.61 0.30 -58.01 16 21 Si 1.02 44.45 29.55 68.60 2.03 46.48 16 22 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 C -0.24 -11.38 9.17 22.39 0.21 -11.18 16 26 C -0.06 -2.09 9.69 22.25 0.22 -1.88 16 27 N -0.55 -17.14 7.81 -185.73 -1.45 -18.59 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 1.19 8.10 -2.38 -0.02 1.17 16 31 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.11 0.24 8.09 -2.39 -0.02 0.22 16 35 H 0.44 5.91 8.81 -92.71 -0.82 5.09 16 36 H 0.14 1.82 8.08 -2.39 -0.02 1.80 16 37 H 0.14 1.79 8.08 -2.39 -0.02 1.77 16 38 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 40 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 41 H 0.12 5.53 5.64 -2.91 -0.02 5.52 16 42 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -90.83 367.41 4.56 -86.26 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.25 Total: 24.37 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 7.33 Total: -15.99 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -4.78 Total: -106.69 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.26 Total: -34.44 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -90.83 4.56 -86.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291157415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.750 kcal (2) G-P(sol) polarization free energy of solvation -90.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds