Wall clock time and date at job start Tue Mar 31 2020 14:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38623 * 120.41010 * 2 1 4 4 C 1.38582 * 118.51899 * 179.97438 * 3 2 1 5 5 N 1.32302 * 119.18121 * 359.72743 * 4 3 2 6 6 C 1.32329 * 120.75514 * 0.54661 * 5 4 3 7 7 O 1.35457 * 119.19360 * 179.71610 * 6 5 4 8 8 C 1.35964 * 118.00295 * 354.80112 * 7 6 5 9 9 C 1.38743 * 119.98872 * 65.76706 * 8 7 6 10 10 C 1.38072 * 120.01754 * 180.02562 * 9 8 7 11 11 C 1.38855 * 119.98560 * 0.02562 * 10 9 8 12 12 N 1.40089 * 120.01364 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99496 * 214.63057 * 12 11 10 14 14 O 1.21287 * 120.00329 * 5.56693 * 13 12 11 15 15 C 1.50708 * 119.99679 * 185.56672 * 13 12 11 16 16 C 1.52997 * 109.46931 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47160 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99663 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00297 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99965 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00180 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46940 * 90.00120 * 21 19 17 23 23 H 1.48496 * 109.47139 * 209.99615 * 21 19 17 24 24 H 1.48497 * 109.47239 * 330.00306 * 21 19 17 25 25 C 1.38854 * 119.97113 * 359.95312 * 11 10 9 26 26 C 1.38075 * 119.98956 * 0.02562 * 25 11 10 27 27 N 1.32277 * 120.41272 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47257 * 270.02615 * 1 2 3 29 29 H 1.09000 * 109.46607 * 30.02503 * 1 2 3 30 30 H 1.08992 * 109.46941 * 150.02290 * 1 2 3 31 31 H 1.07993 * 120.74007 * 359.95072 * 3 2 1 32 32 H 1.08003 * 120.40737 * 179.97438 * 4 3 2 33 33 H 1.07998 * 119.99180 * 359.72831 * 9 8 7 34 34 H 1.07998 * 120.00937 * 179.97438 * 10 9 8 35 35 H 0.96998 * 120.00398 * 34.62816 * 12 11 10 36 36 H 1.08994 * 109.46951 * 299.99555 * 15 13 12 37 37 H 1.09003 * 109.47185 * 59.99931 * 15 13 12 38 38 H 1.09000 * 109.47449 * 300.00179 * 16 15 13 39 39 H 1.09003 * 109.47140 * 60.00029 * 16 15 13 40 40 H 0.97001 * 120.00276 * 179.97438 * 20 19 17 41 41 H 1.08008 * 120.00741 * 179.97438 * 25 11 10 42 42 H 1.07999 * 119.99857 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1955 0.0000 4 6 3.5938 1.1498 0.0005 5 7 4.2004 -0.0260 0.0065 6 6 3.5001 -1.1488 0.0011 7 8 4.1538 -2.3352 0.0017 8 6 5.5094 -2.3172 -0.1010 9 6 6.2748 -1.7695 0.9184 10 6 7.6515 -1.7504 0.8146 11 6 8.2700 -2.2790 -0.3107 12 7 9.6667 -2.2595 -0.4169 13 6 10.2486 -2.0870 -1.6203 14 8 9.5671 -1.8481 -2.5948 15 6 11.7460 -2.1910 -1.7550 16 6 12.1443 -1.9562 -3.2135 17 6 13.6416 -2.0608 -3.3484 18 1 14.2484 -2.2730 -2.4805 19 6 14.2369 -1.8845 -4.5794 20 7 13.4980 -1.6255 -5.6361 21 14 16.0930 -2.0134 -4.7464 22 1 16.4667 -3.4195 -5.0443 23 1 16.5528 -1.1344 -5.8514 24 1 16.7350 -1.5891 -3.4764 25 6 7.5034 -2.8274 -1.3303 26 6 6.1268 -2.8463 -1.2251 27 7 2.1767 -1.1408 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3632 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5134 31 1 1.6876 2.1414 -0.0008 32 1 4.1709 2.0627 0.0001 33 1 5.7935 -1.3537 1.7912 34 1 8.2472 -1.3237 1.6080 35 1 10.2150 -2.3700 0.3756 36 1 12.2206 -1.4404 -1.1231 37 1 12.0706 -3.1845 -1.4455 38 1 11.6697 -2.7070 -3.8452 39 1 11.8197 -0.9629 -3.5234 40 1 13.9168 -1.5011 -6.5022 41 1 7.9839 -3.2383 -2.2061 42 1 5.5305 -3.2724 -2.0183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291962123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:42 Heat of formation + Delta-G solvation = 12.642671 kcal Electronic energy + Delta-G solvation = -25647.475112 eV Core-core repulsion = 21786.648614 eV Total energy + Delta-G solvation = -3860.826498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74433 -40.43019 -39.48773 -37.57263 -34.72083 -34.33808 -33.54054 -32.44614 -31.18586 -31.06439 -28.93434 -28.86612 -25.85871 -24.62551 -23.79257 -23.14991 -22.37235 -21.24490 -19.80138 -19.06182 -18.36003 -17.61380 -17.08157 -16.50947 -16.32758 -15.76768 -15.69265 -15.30160 -14.82804 -14.62251 -14.51389 -14.28399 -13.80524 -13.67715 -13.48277 -13.40993 -13.08991 -12.84446 -12.73296 -12.44218 -12.21217 -12.17790 -11.44077 -11.26112 -11.16967 -10.96623 -10.94029 -10.64028 -10.20244 -10.03288 -9.76230 -9.54381 -9.38866 -9.28167 -9.12903 -8.99895 -8.36647 -7.99652 -6.00109 -4.04993 0.59487 0.70323 0.94438 1.31093 2.31072 3.02535 3.27368 3.31140 3.37746 3.39200 3.40283 3.67841 3.81022 4.04284 4.22645 4.44141 4.66729 4.74250 4.76759 4.83397 4.99151 5.05438 5.19092 5.22795 5.35054 5.37225 5.42153 5.46560 5.52931 5.73312 5.91214 6.02631 6.10231 6.10899 6.24028 6.31234 6.43397 6.56001 6.78667 6.87392 7.13384 7.60966 7.69129 7.78403 7.81571 8.01082 8.31397 8.53291 9.02880 9.58970 11.10745 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.027662 B = 0.001923 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.967275 B =14555.484403 C =14924.635020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.210 3.790 3 C -0.269 4.269 4 C 0.189 3.811 5 N -0.556 5.556 6 C 0.501 3.499 7 O -0.225 6.225 8 C 0.059 3.941 9 C -0.083 4.083 10 C -0.141 4.141 11 C 0.170 3.830 12 N -0.687 5.687 13 C 0.509 3.491 14 O -0.510 6.510 15 C -0.129 4.129 16 C 0.036 3.964 17 C -0.529 4.529 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.111 4.111 26 C -0.088 4.088 27 N -0.526 5.526 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.151 0.849 32 H 0.174 0.826 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.410 0.590 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.261 0.739 41 H 0.145 0.855 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.763 3.995 16.834 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.064 3.936 3 C -0.292 4.292 4 C 0.024 3.976 5 N -0.284 5.284 6 C 0.200 3.800 7 O -0.125 6.125 8 C 0.015 3.985 9 C -0.102 4.102 10 C -0.162 4.162 11 C 0.074 3.926 12 N -0.333 5.333 13 C 0.299 3.701 14 O -0.383 6.383 15 C -0.169 4.169 16 C -0.002 4.002 17 C -0.567 4.567 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.131 4.131 26 C -0.107 4.107 27 N -0.252 5.252 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.169 0.831 32 H 0.191 0.809 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.163 0.837 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.708 3.006 15.889 28.698 hybrid contribution 0.990 0.867 0.281 1.345 sum -22.718 3.873 16.171 28.153 Atomic orbital electron populations 1.20824 0.87172 1.04424 1.03960 1.21591 0.97381 0.86827 0.87822 1.22616 0.96431 1.00529 1.09611 1.23058 0.92052 0.95067 0.87422 1.68205 1.41415 0.98857 1.19935 1.20890 0.85820 0.84808 0.88483 1.84482 1.19185 1.23583 1.85231 1.18420 0.78849 1.05398 0.95790 1.20928 0.93329 0.97962 0.97978 1.20732 0.93955 1.02378 0.99094 1.17931 0.83946 0.95490 0.95208 1.44056 1.04164 1.73387 1.11736 1.21888 0.92526 0.74332 0.81387 1.90702 1.65541 1.44668 1.37385 1.21922 0.87206 1.02950 1.04790 1.18927 0.95746 0.98467 0.87019 1.21191 0.91991 1.49316 0.94217 0.92522 1.25026 0.98189 0.95195 0.95956 1.69995 1.35205 1.48036 0.99495 0.86573 0.85562 0.77955 0.77750 1.20642 1.21208 1.19877 1.21038 0.92377 0.99722 0.99963 1.20906 0.94497 1.00070 0.95262 1.67371 1.06357 1.31441 1.20058 0.89341 0.89657 0.89625 0.83142 0.80933 0.85657 0.85046 0.75380 0.89818 0.89665 0.95703 0.95699 0.92890 0.83715 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.22 36.01 0.37 -0.14 16 2 C 0.21 1.82 6.82 -82.26 -0.56 1.26 16 3 C -0.27 -1.90 9.85 -39.31 -0.39 -2.29 16 4 C 0.19 1.66 11.30 -17.22 -0.19 1.46 16 5 N -0.56 -6.91 8.60 -14.73 -0.13 -7.04 16 6 C 0.50 6.79 8.35 -91.22 -0.76 6.03 16 7 O -0.23 -3.24 10.06 -2.46 -0.02 -3.27 16 8 C 0.06 0.81 5.48 -39.21 -0.21 0.60 16 9 C -0.08 -1.02 8.81 -39.46 -0.35 -1.37 16 10 C -0.14 -1.68 9.96 -39.41 -0.39 -2.07 16 11 C 0.17 2.41 6.25 -83.63 -0.52 1.88 16 12 N -0.69 -9.52 5.34 -9.83 -0.05 -9.58 16 13 C 0.51 9.36 7.55 -10.98 -0.08 9.28 16 14 O -0.51 -11.50 13.77 5.55 0.08 -11.42 16 15 C -0.13 -2.48 5.64 -27.88 -0.16 -2.63 16 16 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 17 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 21 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 25 C -0.11 -1.70 8.65 -39.41 -0.34 -2.04 16 26 C -0.09 -1.24 9.98 -39.45 -0.39 -1.64 16 27 N -0.53 -6.51 10.40 -10.93 -0.11 -6.63 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.21 8.10 -51.93 -0.42 -0.21 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.41 4.13 8.82 -40.82 -0.36 3.77 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 41 H 0.15 2.45 6.52 -52.48 -0.34 2.11 16 42 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -36.29 368.56 -8.80 -45.10 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.31 Total: 1.53 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -4.52 Total: -4.28 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.44 Total: -49.61 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.05 Total: -14.69 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.29 -8.80 -45.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291962123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.738 kcal (2) G-P(sol) polarization free energy of solvation -36.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds