Wall clock time and date at job start Tue Mar 31 2020 14:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38623 * 120.41010 * 2 1 4 4 C 1.38582 * 118.51899 * 179.97438 * 3 2 1 5 5 N 1.32302 * 119.18121 * 359.72743 * 4 3 2 6 6 C 1.32329 * 120.75514 * 0.54661 * 5 4 3 7 7 O 1.35457 * 119.19360 * 179.71610 * 6 5 4 8 8 C 1.35964 * 118.00295 * 354.80112 * 7 6 5 9 9 C 1.38743 * 119.98872 * 65.76706 * 8 7 6 10 10 C 1.38072 * 120.01754 * 180.02562 * 9 8 7 11 11 C 1.38855 * 119.98560 * 0.02562 * 10 9 8 12 12 N 1.40089 * 120.01364 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99496 * 214.63057 * 12 11 10 14 14 O 1.21287 * 120.00329 * 5.56693 * 13 12 11 15 15 C 1.50708 * 119.99679 * 185.56672 * 13 12 11 16 16 C 1.52997 * 109.46931 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47160 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99663 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00297 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99965 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00180 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46940 * 90.00120 * 21 19 17 23 23 H 1.48496 * 109.47139 * 209.99615 * 21 19 17 24 24 H 1.48497 * 109.47239 * 330.00306 * 21 19 17 25 25 C 1.38854 * 119.97113 * 359.95312 * 11 10 9 26 26 C 1.38075 * 119.98956 * 0.02562 * 25 11 10 27 27 N 1.32277 * 120.41272 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47257 * 270.02615 * 1 2 3 29 29 H 1.09000 * 109.46607 * 30.02503 * 1 2 3 30 30 H 1.08992 * 109.46941 * 150.02290 * 1 2 3 31 31 H 1.07993 * 120.74007 * 359.95072 * 3 2 1 32 32 H 1.08003 * 120.40737 * 179.97438 * 4 3 2 33 33 H 1.07998 * 119.99180 * 359.72831 * 9 8 7 34 34 H 1.07998 * 120.00937 * 179.97438 * 10 9 8 35 35 H 0.96998 * 120.00398 * 34.62816 * 12 11 10 36 36 H 1.08994 * 109.46951 * 299.99555 * 15 13 12 37 37 H 1.09003 * 109.47185 * 59.99931 * 15 13 12 38 38 H 1.09000 * 109.47449 * 300.00179 * 16 15 13 39 39 H 1.09003 * 109.47140 * 60.00029 * 16 15 13 40 40 H 0.97001 * 120.00276 * 179.97438 * 20 19 17 41 41 H 1.08008 * 120.00741 * 179.97438 * 25 11 10 42 42 H 1.07999 * 119.99857 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1955 0.0000 4 6 3.5938 1.1498 0.0005 5 7 4.2004 -0.0260 0.0065 6 6 3.5001 -1.1488 0.0011 7 8 4.1538 -2.3352 0.0017 8 6 5.5094 -2.3172 -0.1010 9 6 6.2748 -1.7695 0.9184 10 6 7.6515 -1.7504 0.8146 11 6 8.2700 -2.2790 -0.3107 12 7 9.6667 -2.2595 -0.4169 13 6 10.2486 -2.0870 -1.6203 14 8 9.5671 -1.8481 -2.5948 15 6 11.7460 -2.1910 -1.7550 16 6 12.1443 -1.9562 -3.2135 17 6 13.6416 -2.0608 -3.3484 18 1 14.2484 -2.2730 -2.4805 19 6 14.2369 -1.8845 -4.5794 20 7 13.4980 -1.6255 -5.6361 21 14 16.0930 -2.0134 -4.7464 22 1 16.4667 -3.4195 -5.0443 23 1 16.5528 -1.1344 -5.8514 24 1 16.7350 -1.5891 -3.4764 25 6 7.5034 -2.8274 -1.3303 26 6 6.1268 -2.8463 -1.2251 27 7 2.1767 -1.1408 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3632 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5134 31 1 1.6876 2.1414 -0.0008 32 1 4.1709 2.0627 0.0001 33 1 5.7935 -1.3537 1.7912 34 1 8.2472 -1.3237 1.6080 35 1 10.2150 -2.3700 0.3756 36 1 12.2206 -1.4404 -1.1231 37 1 12.0706 -3.1845 -1.4455 38 1 11.6697 -2.7070 -3.8452 39 1 11.8197 -0.9629 -3.5234 40 1 13.9168 -1.5011 -6.5022 41 1 7.9839 -3.2383 -2.2061 42 1 5.5305 -3.2724 -2.0183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291962123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:41 Heat of formation + Delta-G solvation = -13.853565 kcal Electronic energy + Delta-G solvation = -25648.624075 eV Core-core repulsion = 21786.648614 eV Total energy + Delta-G solvation = -3861.975461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.57733 -41.59519 -40.59640 -38.74320 -35.66833 -35.52631 -35.42355 -33.25811 -32.96480 -32.16559 -30.11967 -29.44807 -27.68844 -25.59090 -24.67953 -24.23050 -23.74597 -22.55378 -21.25422 -19.99357 -19.16408 -18.94257 -18.68019 -17.81488 -17.25044 -17.05247 -16.63535 -16.49783 -16.45549 -15.83594 -15.51100 -15.33614 -15.00443 -14.65669 -14.54251 -14.27047 -14.20600 -14.09949 -13.85660 -13.74413 -13.26461 -13.22264 -13.14871 -12.81977 -12.48047 -12.24049 -12.11944 -11.92107 -11.70189 -11.65135 -11.39799 -11.30311 -10.83117 -10.56354 -10.32341 -10.09430 -10.07542 -9.12669 -8.18038 -6.31871 -0.22067 -0.03576 0.02101 0.25657 1.32179 1.42991 1.45336 1.56214 1.68538 2.05023 2.43867 2.60773 2.72682 3.01058 3.15485 3.39696 3.58203 3.71095 3.81317 3.93076 4.09447 4.17832 4.26555 4.32883 4.44909 4.50715 4.54542 4.59318 4.74225 4.74936 4.84133 4.88980 5.05082 5.06293 5.19927 5.24026 5.29944 5.37110 5.50370 5.62433 5.66716 5.85082 5.90867 6.16849 6.23307 6.43932 6.86611 7.01246 7.18059 7.38549 8.94507 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.027662 B = 0.001923 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.967275 B =14555.484403 C =14924.635020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.194 3.806 3 C -0.248 4.248 4 C 0.174 3.826 5 N -0.580 5.580 6 C 0.475 3.525 7 O -0.244 6.244 8 C 0.059 3.941 9 C -0.079 4.079 10 C -0.120 4.120 11 C 0.151 3.849 12 N -0.661 5.661 13 C 0.513 3.487 14 O -0.563 6.563 15 C -0.116 4.116 16 C 0.040 3.960 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.973 3.027 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.254 1.254 25 C -0.126 4.126 26 C -0.101 4.101 27 N -0.555 5.555 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.194 0.806 32 H 0.204 0.796 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.432 0.568 36 H 0.113 0.887 37 H 0.112 0.888 38 H -0.017 1.017 39 H -0.016 1.016 40 H 0.262 0.738 41 H 0.119 0.881 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.640 5.572 19.845 31.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.049 3.951 3 C -0.269 4.269 4 C 0.010 3.990 5 N -0.309 5.309 6 C 0.173 3.827 7 O -0.145 6.145 8 C 0.016 3.984 9 C -0.099 4.099 10 C -0.140 4.140 11 C 0.056 3.944 12 N -0.309 5.309 13 C 0.303 3.697 14 O -0.440 6.440 15 C -0.156 4.156 16 C 0.002 3.998 17 C -0.580 4.580 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.178 1.178 25 C -0.147 4.147 26 C -0.120 4.120 27 N -0.282 5.282 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.211 0.789 32 H 0.220 0.780 33 H 0.160 0.840 34 H 0.187 0.813 35 H 0.272 0.728 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.604 4.591 18.983 30.636 hybrid contribution 0.725 0.459 -0.624 1.061 sum -22.879 5.050 18.360 29.766 Atomic orbital electron populations 1.20969 0.84443 1.05428 1.05183 1.22378 0.99124 0.86516 0.87065 1.23072 0.95798 1.01650 1.06420 1.23723 0.93434 0.94867 0.86942 1.68168 1.42215 0.99612 1.20896 1.20965 0.86366 0.84770 0.90566 1.84394 1.19268 1.25009 1.85841 1.18562 0.79184 1.04832 0.95834 1.21132 0.93465 0.97292 0.97966 1.21015 0.93896 1.00440 0.98619 1.18037 0.83699 0.96745 0.95941 1.43598 1.04424 1.71884 1.11003 1.21656 0.92103 0.73917 0.82027 1.90699 1.66354 1.47428 1.39504 1.21675 0.88160 1.05360 1.00371 1.18719 0.95230 0.94809 0.91044 1.21717 0.92876 1.48390 0.94996 0.90352 1.26134 1.04036 0.94713 0.95627 1.70179 1.37802 1.49589 1.00222 0.85324 0.78545 0.78092 0.78301 1.19829 1.21363 1.17780 1.20912 0.93011 1.00916 0.99841 1.20917 0.94190 1.00899 0.95997 1.67380 1.06114 1.33654 1.21054 0.87816 0.86720 0.90526 0.78867 0.77952 0.83975 0.81309 0.72773 0.86920 0.87015 0.99819 0.99783 0.92921 0.86311 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.22 71.24 0.73 -0.01 16 2 C 0.19 3.05 6.82 42.58 0.29 3.34 16 3 C -0.25 -2.78 9.85 22.44 0.22 -2.56 16 4 C 0.17 2.70 11.30 84.70 0.96 3.65 16 5 N -0.58 -14.11 8.60 -313.45 -2.70 -16.80 16 6 C 0.47 13.07 8.35 180.56 1.51 14.58 16 7 O -0.24 -7.33 10.06 -31.72 -0.32 -7.65 16 8 C 0.06 1.67 5.48 22.51 0.12 1.80 16 9 C -0.08 -1.87 8.81 22.35 0.20 -1.67 16 10 C -0.12 -2.59 9.96 22.38 0.22 -2.37 16 11 C 0.15 4.20 6.25 38.12 0.24 4.44 16 12 N -0.66 -17.51 5.34 -303.39 -1.62 -19.13 16 13 C 0.51 19.06 7.55 87.66 0.66 19.73 16 14 O -0.56 -26.85 13.77 -3.05 -0.04 -26.90 16 15 C -0.12 -4.39 5.64 29.85 0.17 -4.22 16 16 C 0.04 2.15 4.26 29.85 0.13 2.28 16 17 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 18 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 19 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 20 N -0.94 -59.22 13.29 21.45 0.28 -58.94 16 21 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 25 C -0.13 -4.09 8.65 22.38 0.19 -3.90 16 26 C -0.10 -3.03 9.98 22.35 0.22 -2.81 16 27 N -0.55 -13.77 10.40 -301.45 -3.14 -16.90 16 28 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.11 0.14 8.10 -2.39 -0.02 0.12 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.19 0.41 8.06 -2.91 -0.02 0.39 16 32 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.43 7.41 8.82 -92.71 -0.82 6.59 16 36 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 37 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 38 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 39 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 40 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.12 4.44 6.52 -2.91 -0.02 4.42 16 42 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -85.55 368.56 1.29 -84.26 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.24 Total: 13.84 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.55 Total: 2.31 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -7.17 Total: -111.77 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.36 Total: -34.54 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -85.55 1.29 -84.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291962123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.406 kcal (2) G-P(sol) polarization free energy of solvation -85.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds