Wall clock time and date at job start Tue Mar 31 2020 15:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50707 * 119.99923 * 2 1 4 4 N 1.46495 * 109.47150 * 125.00292 * 3 2 1 5 5 C 1.46505 * 119.99750 * 269.99652 * 4 3 2 6 6 C 1.50702 * 109.47331 * 270.00401 * 5 4 3 7 7 H 1.08001 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00071 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00267 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00305 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46824 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47514 * 119.99734 * 10 8 6 13 13 H 1.48503 * 109.47147 * 239.99819 * 10 8 6 14 14 C 1.34771 * 120.00276 * 89.99846 * 4 3 2 15 15 O 1.21622 * 120.00218 * 179.97438 * 14 4 3 16 16 C 1.47297 * 120.00114 * 0.02562 * 14 4 3 17 17 C 1.37212 * 128.58064 * 89.99746 * 16 14 4 18 18 C 1.50700 * 126.72694 * 0.02562 * 17 16 14 19 19 O 1.33502 * 106.54946 * 180.02562 * 17 16 14 20 20 N 1.20651 * 113.38372 * 359.72475 * 19 17 16 21 21 C 1.30836 * 112.10819 * 0.46095 * 20 19 17 22 22 C 1.48377 * 127.43995 * 179.83018 * 21 20 19 23 23 C 1.39292 * 119.72773 * 334.66513 * 22 21 20 24 24 C 1.38459 * 119.06887 * 179.74205 * 23 22 21 25 25 C 1.38733 * 118.50469 * 0.52187 * 24 23 22 26 26 C 1.38325 * 119.35472 * 359.47484 * 25 24 23 27 27 N 1.31703 * 120.89343 * 0.27989 * 26 25 24 28 28 H 1.08003 * 119.99837 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99903 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00279 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46971 * 4.99678 * 3 2 1 32 32 H 1.09005 * 109.46930 * 245.00487 * 3 2 1 33 33 H 1.09001 * 109.46852 * 30.00405 * 5 4 3 34 34 H 1.08996 * 109.47052 * 150.00201 * 5 4 3 35 35 H 0.96997 * 120.00470 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.46894 * 89.99739 * 18 17 16 37 37 H 1.08991 * 109.47584 * 210.00454 * 18 17 16 38 38 H 1.09003 * 109.47147 * 330.00483 * 18 17 16 39 39 H 1.07999 * 120.46153 * 0.02562 * 23 22 21 40 40 H 1.08003 * 120.74577 * 180.24833 * 24 23 22 41 41 H 1.08002 * 120.32669 * 179.75933 * 25 24 23 42 42 H 1.08001 * 119.55848 * 180.25926 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5589 1.8651 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3040 3.8371 1.6367 8 6 2.5193 4.0667 3.6084 9 7 1.9600 3.4659 4.6360 10 14 2.8736 5.8994 3.6776 11 1 3.5024 6.3304 2.4032 12 1 1.6035 6.6419 3.8794 13 1 3.7972 6.1828 4.8054 14 6 4.2497 0.8662 0.9823 15 8 5.0222 0.8889 1.9215 16 6 4.6872 0.3308 -0.3183 17 6 5.2694 0.9982 -1.3663 18 6 5.6022 2.4668 -1.4260 19 8 5.4833 0.0917 -2.3227 20 7 5.1273 -1.0199 -2.0171 21 6 4.6070 -1.0578 -0.8172 22 6 4.0603 -2.2410 -0.1081 23 6 3.5772 -3.3229 -0.8405 24 6 3.0751 -4.4222 -0.1648 25 6 3.0627 -4.3979 1.2222 26 6 3.5585 -3.2899 1.8855 27 7 4.0352 -2.2595 1.2180 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6213 1.4027 -0.9315 33 1 1.4888 1.6967 2.5459 34 1 3.0990 1.3605 3.2259 35 1 1.7311 3.9745 5.4296 36 1 6.6120 2.6261 -1.0480 37 1 5.5421 2.8113 -2.4583 38 1 4.8932 3.0252 -0.8148 39 1 3.5984 -3.3064 -1.9202 40 1 2.6973 -5.2774 -0.7055 41 1 2.6741 -5.2378 1.7789 42 1 3.5544 -3.2693 2.9653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293754979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:34 Heat of formation + Delta-G solvation = 91.053131 kcal Electronic energy + Delta-G solvation = -28234.992643 eV Core-core repulsion = 24377.566278 eV Total energy + Delta-G solvation = -3857.426365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.78045 -40.15654 -38.87412 -35.59144 -34.27023 -33.50553 -33.12739 -32.59283 -32.00561 -30.77696 -28.27428 -27.40598 -25.64250 -24.94146 -23.98954 -23.51612 -22.14371 -20.62885 -19.84304 -18.79791 -17.74386 -17.40560 -16.89599 -16.47857 -16.23032 -15.98847 -15.58094 -15.34283 -14.62999 -14.37793 -14.31513 -14.00146 -13.74956 -13.45774 -13.20466 -13.16252 -12.78915 -12.70978 -12.45764 -12.15231 -11.93510 -11.64082 -11.36188 -11.23133 -11.01575 -10.87561 -10.70271 -10.60130 -10.20512 -9.99542 -9.63976 -9.50070 -9.37104 -9.16208 -9.00380 -8.86817 -8.42959 -7.68224 -6.03835 -4.08808 0.58002 1.14396 1.47363 2.16323 2.47543 2.92372 3.23484 3.29650 3.37630 3.40539 3.48814 3.76600 4.07034 4.26992 4.44582 4.67630 4.70620 4.89052 4.93032 4.96613 5.11515 5.21042 5.30238 5.31629 5.41002 5.43971 5.47841 5.56290 5.61462 5.68266 5.73727 5.91311 6.00097 6.00805 6.03476 6.19176 6.49521 6.81373 6.92585 7.10013 7.47613 7.54863 7.87515 7.92382 8.19233 8.22989 8.38315 8.89159 9.07398 9.56141 11.04312 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.004615 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.568900 B = 6066.257268 C = 7043.764640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.139 3.861 4 N -0.581 5.581 5 C 0.250 3.750 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.596 3.404 15 O -0.515 6.515 16 C -0.194 4.194 17 C -0.002 4.002 18 C -0.076 4.076 19 O 0.105 5.895 20 N -0.343 5.343 21 C 0.086 3.914 22 C 0.195 3.805 23 C -0.145 4.145 24 C -0.077 4.077 25 C -0.165 4.165 26 C 0.111 3.889 27 N -0.445 5.445 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.262 0.738 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 -11.884 -13.656 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.182 4.182 3 C 0.015 3.985 4 N -0.312 5.312 5 C 0.132 3.868 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.380 3.620 15 O -0.390 6.390 16 C -0.202 4.202 17 C -0.065 4.065 18 C -0.134 4.134 19 O 0.038 5.962 20 N -0.047 5.047 21 C -0.074 4.074 22 C 0.058 3.942 23 C -0.166 4.166 24 C -0.103 4.103 25 C -0.186 4.186 26 C -0.047 4.047 27 N -0.155 5.155 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.007 -11.981 -13.431 18.027 hybrid contribution -0.459 0.424 0.343 0.713 sum 0.548 -11.557 -13.089 17.469 Atomic orbital electron populations 1.23773 0.95675 1.01663 1.01040 1.23416 0.96335 0.99023 0.99447 1.20530 0.92970 0.95288 0.89677 1.48086 1.09661 1.59763 1.13641 1.19308 0.95458 0.93708 0.78374 1.21449 1.40550 0.93191 1.01262 0.92350 1.24921 0.95066 0.98692 0.95324 1.69946 1.42042 1.36052 1.05164 0.86462 0.77899 0.85010 0.78152 1.19753 1.21024 1.20895 1.16596 0.82685 0.77968 0.84789 1.90793 1.52901 1.55460 1.39831 1.22317 1.07449 0.92328 0.98069 1.24558 0.99643 0.94841 0.87456 1.20474 1.04439 0.83757 1.04683 1.84452 1.61468 1.11794 1.38496 1.73833 1.15238 1.00391 1.15197 1.22443 1.01538 0.92533 0.90846 1.18231 0.96384 0.90293 0.89298 1.22036 0.99441 0.93625 1.01507 1.21511 0.96575 0.97779 0.94453 1.22307 1.00867 1.00202 0.95199 1.22862 0.93021 0.88056 1.00810 1.67634 1.13273 1.27238 1.07329 0.88973 0.88141 0.88423 0.89188 0.91402 0.94885 0.93652 0.92780 0.88725 0.89368 0.88183 0.84407 0.84356 0.84328 0.81950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 14.32 29.01 0.42 -2.19 16 2 C -0.16 -2.65 9.85 -36.02 -0.35 -3.00 16 3 C 0.14 2.46 5.67 -5.19 -0.03 2.43 16 4 N -0.58 -12.71 2.44 -177.75 -0.43 -13.14 16 5 C 0.25 6.57 5.16 -5.19 -0.03 6.54 16 6 C -0.53 -14.57 9.39 -34.44 -0.32 -14.90 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 10 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.60 13.27 6.95 -12.58 -0.09 13.18 16 15 O -0.51 -13.71 16.69 5.26 0.09 -13.62 16 16 C -0.19 -3.57 4.47 -102.69 -0.46 -4.02 16 17 C 0.00 -0.04 7.23 -34.68 -0.25 -0.29 16 18 C -0.08 -0.89 10.32 36.01 0.37 -0.52 16 19 O 0.11 1.52 11.05 18.63 0.21 1.73 16 20 N -0.34 -5.39 11.99 34.60 0.41 -4.97 16 21 C 0.09 1.48 7.16 -80.22 -0.57 0.90 16 22 C 0.19 3.14 5.33 -82.95 -0.44 2.70 16 23 C -0.14 -1.81 9.77 -39.11 -0.38 -2.19 16 24 C -0.08 -0.77 10.17 -39.32 -0.40 -1.17 16 25 C -0.17 -1.68 10.11 -39.37 -0.40 -2.07 16 26 C 0.11 1.50 11.18 -17.58 -0.20 1.30 16 27 N -0.45 -7.74 9.79 -9.77 -0.10 -7.84 16 28 H 0.09 1.15 8.06 -52.48 -0.42 0.72 16 29 H 0.10 1.36 7.84 -52.48 -0.41 0.94 16 30 H 0.10 1.66 6.54 -52.49 -0.34 1.32 16 31 H 0.09 1.57 7.72 -51.93 -0.40 1.17 16 32 H 0.07 1.08 6.65 -51.93 -0.35 0.73 16 33 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 39 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -34.84 373.65 -6.94 -41.78 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.23 Total: 1.26 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -3.23 Total: -1.66 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.62 Total: -51.52 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.29 Total: -11.89 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.84 -6.94 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293754979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.836 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds