Wall clock time and date at job start Tue Mar 31 2020 15:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50707 * 119.99923 * 2 1 4 4 N 1.46495 * 109.47150 * 125.00292 * 3 2 1 5 5 C 1.46505 * 119.99750 * 269.99652 * 4 3 2 6 6 C 1.50702 * 109.47331 * 270.00401 * 5 4 3 7 7 H 1.08001 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00071 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00267 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00305 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46824 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47514 * 119.99734 * 10 8 6 13 13 H 1.48503 * 109.47147 * 239.99819 * 10 8 6 14 14 C 1.34771 * 120.00276 * 89.99846 * 4 3 2 15 15 O 1.21622 * 120.00218 * 179.97438 * 14 4 3 16 16 C 1.47297 * 120.00114 * 0.02562 * 14 4 3 17 17 C 1.37212 * 128.58064 * 89.99746 * 16 14 4 18 18 C 1.50700 * 126.72694 * 0.02562 * 17 16 14 19 19 O 1.33502 * 106.54946 * 180.02562 * 17 16 14 20 20 N 1.20651 * 113.38372 * 359.72475 * 19 17 16 21 21 C 1.30836 * 112.10819 * 0.46095 * 20 19 17 22 22 C 1.48377 * 127.43995 * 179.83018 * 21 20 19 23 23 C 1.39292 * 119.72773 * 334.66513 * 22 21 20 24 24 C 1.38459 * 119.06887 * 179.74205 * 23 22 21 25 25 C 1.38733 * 118.50469 * 0.52187 * 24 23 22 26 26 C 1.38325 * 119.35472 * 359.47484 * 25 24 23 27 27 N 1.31703 * 120.89343 * 0.27989 * 26 25 24 28 28 H 1.08003 * 119.99837 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99903 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00279 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46971 * 4.99678 * 3 2 1 32 32 H 1.09005 * 109.46930 * 245.00487 * 3 2 1 33 33 H 1.09001 * 109.46852 * 30.00405 * 5 4 3 34 34 H 1.08996 * 109.47052 * 150.00201 * 5 4 3 35 35 H 0.96997 * 120.00470 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.46894 * 89.99739 * 18 17 16 37 37 H 1.08991 * 109.47584 * 210.00454 * 18 17 16 38 38 H 1.09003 * 109.47147 * 330.00483 * 18 17 16 39 39 H 1.07999 * 120.46153 * 0.02562 * 23 22 21 40 40 H 1.08003 * 120.74577 * 180.24833 * 24 23 22 41 41 H 1.08002 * 120.32669 * 179.75933 * 25 24 23 42 42 H 1.08001 * 119.55848 * 180.25926 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1313 5 6 2.5589 1.8651 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3040 3.8371 1.6367 8 6 2.5193 4.0667 3.6084 9 7 1.9600 3.4659 4.6360 10 14 2.8736 5.8994 3.6776 11 1 3.5024 6.3304 2.4032 12 1 1.6035 6.6419 3.8794 13 1 3.7972 6.1828 4.8054 14 6 4.2497 0.8662 0.9823 15 8 5.0222 0.8889 1.9215 16 6 4.6872 0.3308 -0.3183 17 6 5.2694 0.9982 -1.3663 18 6 5.6022 2.4668 -1.4260 19 8 5.4833 0.0917 -2.3227 20 7 5.1273 -1.0199 -2.0171 21 6 4.6070 -1.0578 -0.8172 22 6 4.0603 -2.2410 -0.1081 23 6 3.5772 -3.3229 -0.8405 24 6 3.0751 -4.4222 -0.1648 25 6 3.0627 -4.3979 1.2222 26 6 3.5585 -3.2899 1.8855 27 7 4.0352 -2.2595 1.2180 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6213 1.4027 -0.9315 33 1 1.4888 1.6967 2.5459 34 1 3.0990 1.3605 3.2259 35 1 1.7311 3.9745 5.4296 36 1 6.6120 2.6261 -1.0480 37 1 5.5421 2.8113 -2.4583 38 1 4.8932 3.0252 -0.8148 39 1 3.5984 -3.3064 -1.9202 40 1 2.6973 -5.2774 -0.7055 41 1 2.6741 -5.2378 1.7789 42 1 3.5544 -3.2693 2.9653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293754979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:33 Heat of formation + Delta-G solvation = 69.013116 kcal Electronic energy + Delta-G solvation = -28235.948370 eV Core-core repulsion = 24377.566278 eV Total energy + Delta-G solvation = -3858.382092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.01894 -41.16090 -40.58912 -37.26199 -35.55096 -35.04542 -34.63437 -33.72500 -33.54331 -31.81449 -29.95486 -28.82665 -27.10178 -26.39290 -25.34661 -24.61804 -23.73217 -21.83915 -21.12661 -20.30739 -18.99949 -18.62179 -18.60594 -18.15218 -17.42248 -17.31979 -16.95672 -16.54661 -16.22182 -16.10978 -15.68802 -15.10775 -14.97043 -14.70125 -14.46992 -14.19562 -14.13339 -14.10709 -13.93164 -13.61213 -13.37109 -13.05874 -12.88340 -12.82899 -12.61504 -12.47386 -12.31198 -12.20684 -11.83033 -11.64840 -11.04482 -10.95551 -10.63558 -10.54406 -10.49587 -10.32137 -9.91315 -9.53890 -8.19983 -6.34830 -0.44117 0.20789 0.25645 0.97836 1.21439 1.39700 1.42376 1.53361 1.57038 1.74253 2.26689 2.40109 2.56781 2.77495 3.10492 3.14894 3.53379 3.75530 3.83463 3.94214 3.98547 4.01518 4.07478 4.12778 4.19560 4.27878 4.32551 4.55112 4.57401 4.69081 4.70006 4.72242 4.93540 4.98337 5.04757 5.06676 5.11913 5.22880 5.49198 5.59345 5.62146 5.71847 5.87238 6.06007 6.61482 6.73966 6.87928 6.98923 7.24681 7.40477 8.88211 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.004615 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.568900 B = 6066.257268 C = 7043.764640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.187 4.187 3 C 0.140 3.860 4 N -0.582 5.582 5 C 0.270 3.730 6 C -0.539 4.539 7 H 0.061 0.939 8 C 0.009 3.991 9 N -0.930 5.930 10 Si 0.969 3.031 11 H -0.260 1.260 12 H -0.271 1.271 13 H -0.284 1.284 14 C 0.603 3.397 15 O -0.575 6.575 16 C -0.237 4.237 17 C 0.025 3.975 18 C -0.078 4.078 19 O 0.119 5.881 20 N -0.343 5.343 21 C 0.085 3.915 22 C 0.160 3.840 23 C -0.141 4.141 24 C -0.066 4.066 25 C -0.144 4.144 26 C 0.085 3.915 27 N -0.500 5.500 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.021 0.979 34 H -0.005 1.005 35 H 0.266 0.734 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.083 0.917 39 H 0.152 0.848 40 H 0.184 0.816 41 H 0.179 0.821 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 -12.415 -16.204 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.207 4.207 3 C 0.018 3.982 4 N -0.311 5.311 5 C 0.150 3.850 6 C -0.578 4.578 7 H 0.079 0.921 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.184 1.184 12 H -0.196 1.196 13 H -0.210 1.210 14 C 0.390 3.610 15 O -0.455 6.455 16 C -0.245 4.245 17 C -0.038 4.038 18 C -0.135 4.135 19 O 0.052 5.948 20 N -0.047 5.047 21 C -0.075 4.075 22 C 0.023 3.977 23 C -0.163 4.163 24 C -0.092 4.092 25 C -0.164 4.164 26 C -0.074 4.074 27 N -0.210 5.210 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.039 0.961 34 H 0.013 0.987 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.150 0.850 38 H 0.102 0.898 39 H 0.170 0.830 40 H 0.201 0.799 41 H 0.197 0.803 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.041 -12.525 -16.043 20.354 hybrid contribution -0.229 0.468 1.144 1.256 sum -0.188 -12.058 -14.900 19.168 Atomic orbital electron populations 1.24033 0.94902 1.03179 0.97632 1.23237 0.97006 0.97870 1.02541 1.20694 0.92500 0.96340 0.88676 1.48005 1.10590 1.59207 1.13268 1.18729 0.93734 0.93098 0.79476 1.21702 1.40650 0.93764 1.01656 0.92090 1.25868 0.94566 1.03853 0.94731 1.70077 1.42867 1.38143 1.05838 0.85341 0.78122 0.78779 0.78426 1.18384 1.19627 1.21032 1.16937 0.81904 0.76607 0.85567 1.90736 1.54507 1.57883 1.42360 1.21915 1.11099 0.93986 0.97518 1.25016 0.96791 0.95883 0.86136 1.20692 1.04374 0.81190 1.07218 1.84455 1.60924 1.11507 1.37876 1.73792 1.15462 1.00715 1.14694 1.22714 1.01251 0.92495 0.91040 1.18371 0.98684 0.91340 0.89258 1.22262 0.98613 0.93246 1.02140 1.22038 0.94779 0.97959 0.94393 1.22691 0.98387 0.99628 0.95702 1.23149 0.94075 0.88871 1.01280 1.67484 1.15336 1.29559 1.08653 0.86653 0.87297 0.89158 0.89180 0.89636 0.96112 0.98678 0.92465 0.87547 0.85050 0.89846 0.83040 0.79864 0.80315 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 14.32 67.78 0.97 -3.34 16 2 C -0.19 -6.10 9.85 25.65 0.25 -5.85 16 3 C 0.14 5.05 5.67 85.64 0.49 5.53 16 4 N -0.58 -26.82 2.44 -834.52 -2.04 -28.86 16 5 C 0.27 15.10 5.16 85.63 0.44 15.54 16 6 C -0.54 -30.93 9.39 25.60 0.24 -30.69 16 7 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 8 C 0.01 0.50 5.46 84.65 0.46 0.96 16 9 N -0.93 -56.44 13.29 21.44 0.28 -56.16 16 10 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 C 0.60 28.52 6.95 86.63 0.60 29.12 16 15 O -0.58 -33.10 16.69 -4.10 -0.07 -33.17 16 16 C -0.24 -9.01 4.47 -18.61 -0.08 -9.09 16 17 C 0.02 0.73 7.23 25.44 0.18 0.92 16 18 C -0.08 -1.71 10.32 71.24 0.74 -0.98 16 19 O 0.12 3.30 11.05 76.91 0.85 4.15 16 20 N -0.34 -10.57 11.99 -45.02 -0.54 -11.11 16 21 C 0.08 2.96 7.16 44.52 0.32 3.28 16 22 C 0.16 5.23 5.33 41.98 0.22 5.46 16 23 C -0.14 -3.32 9.77 22.58 0.22 -3.10 16 24 C -0.07 -1.10 10.17 22.44 0.23 -0.87 16 25 C -0.14 -2.59 10.11 22.41 0.23 -2.36 16 26 C 0.08 2.34 11.18 84.73 0.95 3.28 16 27 N -0.50 -18.31 9.79 -184.84 -1.81 -20.12 16 28 H 0.12 2.58 8.06 -2.91 -0.02 2.55 16 29 H 0.11 2.76 7.84 -2.91 -0.02 2.73 16 30 H 0.09 3.12 6.54 -2.91 -0.02 3.11 16 31 H 0.09 3.18 7.72 -2.39 -0.02 3.16 16 32 H 0.09 2.72 6.65 -2.38 -0.02 2.70 16 33 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 34 H 0.00 -0.32 7.42 -2.39 -0.02 -0.34 16 35 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 2.18 8.10 -2.39 -0.02 2.16 16 39 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 40 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 42 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -82.26 373.65 6.20 -76.06 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.04 Total: 15.08 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 6.46 Total: 7.81 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -4.10 Total: -116.24 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: 0.78 Total: -29.02 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -82.26 6.20 -76.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293754979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.071 kcal (2) G-P(sol) polarization free energy of solvation -82.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds