Wall clock time and date at job start Tue Mar 31 2020 14:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00186 * 2 1 4 4 N 1.46501 * 109.47132 * 124.99662 * 3 2 1 5 5 C 1.46491 * 120.00121 * 7.20984 * 4 3 2 6 6 C 1.50699 * 109.47189 * 270.00056 * 5 4 3 7 7 H 1.08004 * 119.99927 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00355 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00007 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00511 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47460 * 89.99469 * 10 8 6 12 12 H 1.48500 * 109.47369 * 209.99771 * 10 8 6 13 13 H 1.48502 * 109.46875 * 329.99761 * 10 8 6 14 14 C 1.34778 * 119.99647 * 187.20771 * 4 3 2 15 15 O 1.21693 * 119.99954 * 187.75675 * 14 4 3 16 16 C 1.46740 * 119.99937 * 7.75653 * 14 4 3 17 17 C 1.40169 * 120.75346 * 99.13663 * 16 14 4 18 18 N 1.31685 * 119.80912 * 180.02562 * 17 16 14 19 19 C 1.33580 * 121.70314 * 359.97438 * 18 17 16 20 20 C 1.40475 * 119.23627 * 180.02562 * 19 18 17 21 21 C 1.36456 * 119.52271 * 179.97438 * 20 19 18 22 22 C 1.50701 * 120.23621 * 179.97438 * 21 20 19 23 23 C 1.40052 * 119.52668 * 0.02562 * 21 20 19 24 24 C 1.35324 * 120.07199 * 359.67960 * 23 21 20 25 25 N 1.36112 * 120.76668 * 0.61894 * 24 23 21 26 26 C 1.35060 * 119.43824 * 179.68192 * 25 24 23 27 27 O 1.21863 * 120.60948 * 359.71342 * 26 25 24 28 28 H 1.08006 * 120.00219 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00417 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99971 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46858 * 4.99677 * 3 2 1 32 32 H 1.09004 * 109.47067 * 245.00282 * 3 2 1 33 33 H 1.09002 * 109.47484 * 29.99466 * 5 4 3 34 34 H 1.09001 * 109.47476 * 149.99476 * 5 4 3 35 35 H 0.96993 * 120.00317 * 179.97438 * 9 8 6 36 36 H 1.07994 * 120.09423 * 0.02562 * 17 16 14 37 37 H 1.07995 * 120.23989 * 359.97438 * 20 19 18 38 38 H 1.09002 * 109.46929 * 90.00487 * 22 21 20 39 39 H 1.08999 * 109.47377 * 210.00361 * 22 21 20 40 40 H 1.09004 * 109.47470 * 330.00563 * 22 21 20 41 41 H 1.08000 * 119.96309 * 179.97438 * 23 21 20 42 42 H 1.07994 * 119.61257 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 3.1868 0.1321 1.9496 6 6 2.1985 0.1354 3.0872 7 1 1.4970 0.9501 3.1907 8 6 2.1904 -0.9009 3.9965 9 7 3.0450 -1.8927 3.8708 10 14 0.9659 -0.8965 5.4071 11 1 -0.2788 -1.5871 4.9843 12 1 1.5523 -1.6035 6.5740 13 1 0.6507 0.5048 5.7846 14 6 3.6719 2.4604 1.4197 15 8 4.5459 2.4457 2.2663 16 6 3.3563 3.7068 0.7125 17 6 2.5335 4.6766 1.3018 18 7 2.2620 5.7883 0.6502 19 6 2.7523 6.0246 -0.5697 20 6 2.4295 7.2286 -1.2174 21 6 2.9276 7.4763 -2.4635 22 6 2.5913 8.7623 -3.1734 23 6 3.7527 6.5262 -3.0784 24 6 4.0570 5.3749 -2.4356 25 7 3.5595 5.1176 -1.1951 26 6 3.8754 3.9569 -0.5808 27 8 4.5949 3.1405 -1.1292 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5401 0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.0312 -0.7551 1.3358 34 1 4.2009 0.1241 2.3492 35 1 3.0396 -2.6216 4.5107 36 1 2.1234 4.5126 2.2873 37 1 1.7919 7.9530 -0.7328 38 1 3.3355 9.5193 -2.9259 39 1 2.5892 8.5932 -4.2502 40 1 1.6058 9.1048 -2.8575 41 1 4.1504 6.7148 -4.0646 42 1 4.6942 4.6476 -2.9165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293942063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:35 Heat of formation + Delta-G solvation = 39.871662 kcal Electronic energy + Delta-G solvation = -27593.076493 eV Core-core repulsion = 23733.430733 eV Total energy + Delta-G solvation = -3859.645760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.85043 -39.37185 -38.17840 -37.49155 -35.63361 -34.98952 -32.85362 -32.13432 -31.72443 -30.72089 -28.98853 -27.38646 -25.37331 -25.11125 -24.14484 -23.47719 -22.71669 -20.07284 -19.23801 -18.85429 -17.98607 -17.88456 -16.83593 -16.43804 -16.36853 -15.85082 -15.40774 -15.24058 -14.99959 -14.61433 -14.32640 -14.18826 -14.05702 -13.42615 -13.31049 -13.18854 -12.85146 -12.63686 -12.52424 -12.44668 -12.26663 -12.09003 -11.73095 -11.16754 -10.88344 -10.70797 -10.62700 -10.60598 -10.28702 -10.17651 -10.11450 -9.74043 -9.58793 -9.00285 -8.82621 -8.35146 -7.81250 -7.52476 -5.96501 -4.00272 -0.21000 0.23616 1.82312 1.84671 2.28521 2.78518 3.34528 3.35702 3.41297 3.45708 3.55967 3.68281 3.92193 4.03991 4.17078 4.27041 4.47527 4.52485 4.65923 4.84091 4.97291 5.07202 5.15196 5.27221 5.29588 5.34456 5.38230 5.49479 5.63117 5.65227 5.71169 5.80890 5.97560 6.02800 6.19694 6.23355 6.39392 7.07030 7.18440 7.29765 7.53371 7.56495 7.57585 7.63833 8.00070 8.31624 8.48042 8.96310 9.14314 9.63606 11.11666 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020384 B = 0.003264 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.265453 B = 8577.150100 C = 8710.556593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 C 0.149 3.851 4 N -0.583 5.583 5 C 0.243 3.757 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.586 3.414 15 O -0.533 6.533 16 C -0.323 4.323 17 C 0.222 3.778 18 N -0.541 5.541 19 C 0.391 3.609 20 C -0.143 4.143 21 C -0.002 4.002 22 C -0.122 4.122 23 C -0.170 4.170 24 C 0.108 3.892 25 N -0.427 5.427 26 C 0.523 3.477 27 O -0.511 6.511 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.262 0.738 36 H 0.178 0.822 37 H 0.166 0.834 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.159 0.841 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 21.088 -18.458 28.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.150 4.150 3 C 0.026 3.974 4 N -0.314 5.314 5 C 0.124 3.876 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.371 3.629 15 O -0.410 6.410 16 C -0.335 4.335 17 C 0.072 3.928 18 N -0.265 5.265 19 C 0.151 3.849 20 C -0.163 4.163 21 C -0.008 4.008 22 C -0.178 4.178 23 C -0.191 4.191 24 C -0.015 4.015 25 N -0.130 5.130 26 C 0.327 3.673 27 O -0.388 6.388 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.195 0.805 37 H 0.184 0.816 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.177 0.823 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.420 20.723 -17.694 27.463 hybrid contribution -0.247 -0.747 0.570 0.972 sum -3.667 19.976 -17.124 26.566 Atomic orbital electron populations 1.23582 0.95616 1.01160 1.02281 1.22839 0.95939 0.98115 0.98061 1.20385 0.91657 0.95874 0.89511 1.48150 1.40693 1.12989 1.29562 1.19379 0.98461 0.80447 0.89320 1.21380 1.17407 1.06629 1.10201 0.92539 1.24906 0.95950 0.95439 0.97761 1.69938 1.36136 1.10397 1.37000 0.86530 0.81059 0.78128 0.81915 1.20723 1.21188 1.19891 1.16916 0.81807 0.82087 0.82121 1.90779 1.31075 1.84833 1.34331 1.21728 1.12259 1.02731 0.96772 1.23123 0.86672 0.85050 0.97934 1.68862 1.29198 1.23397 1.05033 1.20654 0.85720 0.89192 0.89374 1.20818 1.04955 0.95354 0.95157 1.20306 0.91507 0.95961 0.93050 1.20952 1.03164 0.93102 1.00589 1.20936 1.02420 0.93329 1.02417 1.22416 0.95929 0.98798 0.84377 1.44455 1.35414 1.17883 1.15251 1.17127 0.83274 0.80031 0.86834 1.90963 1.37653 1.43550 1.66661 0.88504 0.89339 0.86367 0.92793 0.92297 0.94361 0.93742 0.92815 0.80488 0.81646 0.89526 0.90263 0.90145 0.82349 0.79943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.14 14.32 29.02 0.42 -2.73 16 2 C -0.13 -2.49 7.99 -36.02 -0.29 -2.78 16 3 C 0.15 2.91 5.70 -5.19 -0.03 2.88 16 4 N -0.58 -13.90 2.86 -177.96 -0.51 -14.40 16 5 C 0.24 6.69 4.60 -5.20 -0.02 6.67 16 6 C -0.52 -14.93 9.09 -34.44 -0.31 -15.25 16 7 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 10 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.59 14.12 6.68 -12.83 -0.09 14.03 16 15 O -0.53 -15.00 16.66 5.19 0.09 -14.91 16 16 C -0.32 -6.21 4.26 -104.46 -0.45 -6.66 16 17 C 0.22 3.59 11.03 -16.89 -0.19 3.40 16 18 N -0.54 -7.50 10.28 -11.95 -0.12 -7.62 16 19 C 0.39 4.65 7.32 -155.80 -1.14 3.51 16 20 C -0.14 -1.09 9.60 -39.38 -0.38 -1.47 16 21 C 0.00 -0.01 5.88 -104.58 -0.62 -0.63 16 22 C -0.12 -0.25 10.03 36.01 0.36 0.11 16 23 C -0.17 -0.93 9.69 -39.94 -0.39 -1.32 16 24 C 0.11 0.98 10.07 -16.69 -0.17 0.81 16 25 N -0.43 -5.52 2.76 -64.90 -0.18 -5.70 16 26 C 0.52 9.16 7.07 -14.85 -0.11 9.06 16 27 O -0.51 -10.20 15.82 5.04 0.08 -10.12 16 28 H 0.10 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.09 1.34 7.84 -52.49 -0.41 0.92 16 30 H 0.12 2.37 6.67 -52.48 -0.35 2.02 16 31 H 0.05 0.97 7.34 -51.93 -0.38 0.59 16 32 H 0.06 1.11 7.67 -51.93 -0.40 0.72 16 33 H 0.04 1.06 5.94 -51.93 -0.31 0.75 16 34 H 0.04 1.39 7.33 -51.93 -0.38 1.01 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.18 2.68 8.06 -52.49 -0.42 2.25 16 37 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 39 H 0.08 0.07 8.10 -51.93 -0.42 -0.35 16 40 H 0.08 0.12 8.09 -51.93 -0.42 -0.30 16 41 H 0.16 0.34 8.06 -52.49 -0.42 -0.09 16 42 H 0.18 1.52 7.32 -52.49 -0.38 1.14 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -38.14 364.13 -8.04 -46.18 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.11 Total: -1.08 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -3.49 Total: 11.34 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.07 Total: -54.15 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.17 Total: -25.03 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.14 -8.04 -46.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293942063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.055 kcal (2) G-P(sol) polarization free energy of solvation -38.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds