Wall clock time and date at job start Tue Mar 31 2020 14:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00186 * 2 1 4 4 N 1.46501 * 109.47132 * 124.99662 * 3 2 1 5 5 C 1.46491 * 120.00121 * 7.20984 * 4 3 2 6 6 C 1.50699 * 109.47189 * 270.00056 * 5 4 3 7 7 H 1.08004 * 119.99927 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00355 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00007 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00511 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47460 * 89.99469 * 10 8 6 12 12 H 1.48500 * 109.47369 * 209.99771 * 10 8 6 13 13 H 1.48502 * 109.46875 * 329.99761 * 10 8 6 14 14 C 1.34778 * 119.99647 * 187.20771 * 4 3 2 15 15 O 1.21693 * 119.99954 * 187.75675 * 14 4 3 16 16 C 1.46740 * 119.99937 * 7.75653 * 14 4 3 17 17 C 1.40169 * 120.75346 * 99.13663 * 16 14 4 18 18 N 1.31685 * 119.80912 * 180.02562 * 17 16 14 19 19 C 1.33580 * 121.70314 * 359.97438 * 18 17 16 20 20 C 1.40475 * 119.23627 * 180.02562 * 19 18 17 21 21 C 1.36456 * 119.52271 * 179.97438 * 20 19 18 22 22 C 1.50701 * 120.23621 * 179.97438 * 21 20 19 23 23 C 1.40052 * 119.52668 * 0.02562 * 21 20 19 24 24 C 1.35324 * 120.07199 * 359.67960 * 23 21 20 25 25 N 1.36112 * 120.76668 * 0.61894 * 24 23 21 26 26 C 1.35060 * 119.43824 * 179.68192 * 25 24 23 27 27 O 1.21863 * 120.60948 * 359.71342 * 26 25 24 28 28 H 1.08006 * 120.00219 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00417 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99971 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46858 * 4.99677 * 3 2 1 32 32 H 1.09004 * 109.47067 * 245.00282 * 3 2 1 33 33 H 1.09002 * 109.47484 * 29.99466 * 5 4 3 34 34 H 1.09001 * 109.47476 * 149.99476 * 5 4 3 35 35 H 0.96993 * 120.00317 * 179.97438 * 9 8 6 36 36 H 1.07994 * 120.09423 * 0.02562 * 17 16 14 37 37 H 1.07995 * 120.23989 * 359.97438 * 20 19 18 38 38 H 1.09002 * 109.46929 * 90.00487 * 22 21 20 39 39 H 1.08999 * 109.47377 * 210.00361 * 22 21 20 40 40 H 1.09004 * 109.47470 * 330.00563 * 22 21 20 41 41 H 1.08000 * 119.96309 * 179.97438 * 23 21 20 42 42 H 1.07994 * 119.61257 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 3.1868 0.1321 1.9496 6 6 2.1985 0.1354 3.0872 7 1 1.4970 0.9501 3.1907 8 6 2.1904 -0.9009 3.9965 9 7 3.0450 -1.8927 3.8708 10 14 0.9659 -0.8965 5.4071 11 1 -0.2788 -1.5871 4.9843 12 1 1.5523 -1.6035 6.5740 13 1 0.6507 0.5048 5.7846 14 6 3.6719 2.4604 1.4197 15 8 4.5459 2.4457 2.2663 16 6 3.3563 3.7068 0.7125 17 6 2.5335 4.6766 1.3018 18 7 2.2620 5.7883 0.6502 19 6 2.7523 6.0246 -0.5697 20 6 2.4295 7.2286 -1.2174 21 6 2.9276 7.4763 -2.4635 22 6 2.5913 8.7623 -3.1734 23 6 3.7527 6.5262 -3.0784 24 6 4.0570 5.3749 -2.4356 25 7 3.5595 5.1176 -1.1951 26 6 3.8754 3.9569 -0.5808 27 8 4.5949 3.1405 -1.1292 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5401 0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.0312 -0.7551 1.3358 34 1 4.2009 0.1241 2.3492 35 1 3.0396 -2.6216 4.5107 36 1 2.1234 4.5126 2.2873 37 1 1.7919 7.9530 -0.7328 38 1 3.3355 9.5193 -2.9259 39 1 2.5892 8.5932 -4.2502 40 1 1.6058 9.1048 -2.8575 41 1 4.1504 6.7148 -4.0646 42 1 4.6942 4.6476 -2.9165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293942063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:34 Heat of formation + Delta-G solvation = 13.768849 kcal Electronic energy + Delta-G solvation = -27594.208396 eV Core-core repulsion = 23733.430733 eV Total energy + Delta-G solvation = -3860.777663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.86972 -40.89555 -39.50036 -38.53579 -37.42651 -35.86768 -34.95197 -33.74042 -32.91986 -31.57368 -30.16113 -29.01806 -26.97804 -26.05657 -25.58631 -24.50673 -24.16434 -21.45380 -20.53946 -20.17342 -19.34973 -18.83513 -18.60766 -18.07342 -17.79041 -17.21270 -16.81081 -16.45435 -16.21821 -15.85666 -15.76244 -15.33144 -15.01998 -14.91511 -14.61089 -14.23410 -14.17748 -14.05678 -13.58435 -13.55507 -13.36804 -13.17885 -13.11059 -12.84751 -12.65336 -12.58027 -12.23895 -12.04077 -11.88261 -11.72772 -11.38693 -11.21085 -10.84820 -10.62984 -10.59890 -10.33824 -9.47855 -8.92288 -8.19579 -6.33566 -1.10326 -0.60368 0.74260 0.82363 1.30383 1.37209 1.40848 1.47077 1.51216 1.70353 2.32679 2.45448 2.57013 2.77207 3.05455 3.10370 3.35048 3.53909 3.67991 3.78562 3.86948 4.01330 4.13498 4.17745 4.34524 4.44040 4.53676 4.57750 4.65799 4.80202 4.83950 4.92159 4.96595 5.03798 5.18553 5.22756 5.23572 5.26695 5.49143 5.53054 5.68593 5.79976 5.87556 6.07054 6.36493 6.46251 6.62383 6.73369 7.22302 7.39328 8.88722 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020384 B = 0.003264 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.265453 B = 8577.150100 C = 8710.556593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.166 4.166 3 C 0.158 3.842 4 N -0.590 5.590 5 C 0.260 3.740 6 C -0.527 4.527 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.970 3.030 11 H -0.262 1.262 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.584 3.416 15 O -0.595 6.595 16 C -0.384 4.384 17 C 0.250 3.750 18 N -0.551 5.551 19 C 0.381 3.619 20 C -0.149 4.149 21 C 0.031 3.969 22 C -0.123 4.123 23 C -0.129 4.129 24 C 0.074 3.926 25 N -0.424 5.424 26 C 0.526 3.474 27 O -0.556 6.556 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.031 0.969 34 H -0.009 1.009 35 H 0.266 0.734 36 H 0.178 0.822 37 H 0.191 0.809 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.208 0.792 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 25.395 -21.159 33.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.185 4.185 3 C 0.036 3.964 4 N -0.319 5.319 5 C 0.139 3.861 6 C -0.566 4.566 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.794 3.206 11 H -0.187 1.187 12 H -0.208 1.208 13 H -0.194 1.194 14 C 0.372 3.628 15 O -0.477 6.477 16 C -0.396 4.396 17 C 0.095 3.905 18 N -0.275 5.275 19 C 0.146 3.854 20 C -0.169 4.169 21 C 0.025 3.975 22 C -0.179 4.179 23 C -0.149 4.149 24 C -0.048 4.048 25 N -0.124 5.124 26 C 0.332 3.668 27 O -0.438 6.438 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.009 0.991 35 H 0.075 0.925 36 H 0.195 0.805 37 H 0.208 0.792 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.225 0.775 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.413 25.111 -20.512 33.052 hybrid contribution 0.652 -1.724 1.061 2.127 sum -5.761 23.387 -19.451 30.960 Atomic orbital electron populations 1.23877 0.94570 1.02995 0.98123 1.22708 0.96942 0.96924 1.01895 1.20455 0.91175 0.96962 0.87770 1.48200 1.41562 1.12016 1.30147 1.18864 0.95387 0.82112 0.89714 1.21534 1.17454 1.06753 1.10849 0.92650 1.25870 0.97933 0.94796 1.00530 1.70080 1.37814 1.11106 1.38165 0.85383 0.78821 0.78410 0.78033 1.18714 1.20794 1.19372 1.17642 0.80374 0.83488 0.81343 1.90699 1.33570 1.86154 1.37282 1.21048 1.17841 1.01882 0.98829 1.23081 0.84985 0.84746 0.97726 1.68904 1.30234 1.22081 1.06249 1.21370 0.84972 0.90016 0.89089 1.21233 1.05673 0.93875 0.96097 1.20897 0.88256 0.96767 0.91607 1.21161 1.04331 0.90932 1.01452 1.21625 0.99284 0.90686 1.03271 1.22865 0.97594 1.00969 0.83409 1.44213 1.35223 1.16606 1.16348 1.16790 0.82697 0.80961 0.86388 1.90911 1.39749 1.45405 1.67689 0.86880 0.87048 0.88549 0.90821 0.92347 0.95110 0.99128 0.92484 0.80452 0.79190 0.87681 0.87959 0.88838 0.77549 0.79933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 14.32 67.78 0.97 -4.13 16 2 C -0.17 -6.55 7.99 25.65 0.20 -6.34 16 3 C 0.16 6.54 5.70 85.63 0.49 7.02 16 4 N -0.59 -30.54 2.86 -835.16 -2.39 -32.92 16 5 C 0.26 15.60 4.60 85.63 0.39 16.00 16 6 C -0.53 -31.96 9.09 25.60 0.23 -31.73 16 7 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 8 C 0.01 0.43 5.46 84.65 0.46 0.89 16 9 N -0.93 -58.92 13.29 21.45 0.28 -58.63 16 10 Si 0.97 46.42 29.54 68.60 2.03 48.45 16 11 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 13 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 14 C 0.58 30.83 6.68 86.46 0.58 31.41 16 15 O -0.60 -37.08 16.66 -4.33 -0.07 -37.15 16 16 C -0.38 -15.87 4.26 -19.76 -0.08 -15.95 16 17 C 0.25 8.45 11.03 85.18 0.94 9.39 16 18 N -0.55 -14.97 10.28 -191.73 -1.97 -16.94 16 19 C 0.38 8.42 7.32 133.84 0.98 9.40 16 20 C -0.15 -1.63 9.60 22.40 0.22 -1.41 16 21 C 0.03 0.14 5.88 -19.84 -0.12 0.03 16 22 C -0.12 0.40 10.03 71.24 0.71 1.12 16 23 C -0.13 -0.71 9.69 22.04 0.21 -0.49 16 24 C 0.07 1.19 10.07 83.36 0.84 2.03 16 25 N -0.42 -10.79 2.76 -477.22 -1.32 -12.10 16 26 C 0.53 19.54 7.07 85.02 0.60 20.14 16 27 O -0.56 -24.03 15.82 -4.87 -0.08 -24.11 16 28 H 0.11 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.11 3.09 7.84 -2.91 -0.02 3.06 16 30 H 0.10 4.17 6.67 -2.91 -0.02 4.15 16 31 H 0.07 2.72 7.34 -2.39 -0.02 2.70 16 32 H 0.06 2.38 7.67 -2.39 -0.02 2.36 16 33 H 0.03 1.87 5.94 -2.39 -0.01 1.85 16 34 H -0.01 -0.65 7.33 -2.39 -0.02 -0.67 16 35 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.18 5.71 8.06 -2.91 -0.02 5.68 16 37 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 38 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H 0.10 -0.64 8.10 -2.39 -0.02 -0.66 16 40 H 0.09 -0.39 8.09 -2.38 -0.02 -0.41 16 41 H 0.21 -0.69 8.06 -2.91 -0.02 -0.72 16 42 H 0.18 2.92 7.32 -2.91 -0.02 2.90 16 Total: -1.00 -94.28 364.13 5.17 -89.11 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.04 Total: 6.94 kcal Atomic # 6 Polarization: 29.73 SS G_CDS: 7.63 Total: 37.37 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -5.39 Total: -120.60 kcal Atomic # 8 Polarization: -61.11 SS G_CDS: -0.15 Total: -61.26 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -94.28 5.17 -89.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293942063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.877 kcal (2) G-P(sol) polarization free energy of solvation -94.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds