Wall clock time and date at job start Tue Mar 31 2020 15:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50697 * 119.99911 * 2 1 4 4 N 1.46499 * 109.47515 * 124.99698 * 3 2 1 5 5 C 1.46500 * 120.00409 * 264.91052 * 4 3 2 6 6 C 1.50697 * 109.47178 * 269.99473 * 5 4 3 7 7 H 1.07998 * 119.99902 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00134 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99930 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99845 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47677 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47169 * 120.00597 * 10 8 6 13 13 H 1.48502 * 109.46980 * 240.00397 * 10 8 6 14 14 C 1.34783 * 120.00127 * 84.90121 * 4 3 2 15 15 O 1.21572 * 120.00171 * 185.94517 * 14 4 3 16 16 C 1.47622 * 119.99593 * 5.95033 * 14 4 3 17 17 C 1.39462 * 120.22549 * 62.51277 * 16 14 4 18 18 C 1.37967 * 119.99585 * 179.97438 * 17 16 14 19 19 C 1.38535 * 120.44467 * 359.97438 * 18 17 16 20 20 C 1.37987 * 120.45273 * 0.02562 * 19 18 17 21 21 C 1.39416 * 119.99625 * 359.97438 * 20 19 18 22 22 C 1.47653 * 120.22236 * 180.02562 * 21 20 19 23 23 N 1.31301 * 126.37822 * 175.30369 * 22 21 20 24 24 N 1.28665 * 109.22575 * 180.02562 * 23 22 21 25 25 C 1.30481 * 109.51545 * 359.97438 * 24 23 22 26 26 C 1.50704 * 126.18298 * 180.02562 * 25 24 23 27 27 O 1.34329 * 107.64151 * 359.73646 * 25 24 23 28 28 H 1.07993 * 120.00318 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.99928 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00589 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47193 * 4.99874 * 3 2 1 32 32 H 1.09003 * 109.47625 * 245.00042 * 3 2 1 33 33 H 1.09006 * 109.46738 * 29.99386 * 5 4 3 34 34 H 1.09001 * 109.47547 * 149.99301 * 5 4 3 35 35 H 0.96995 * 120.00126 * 179.97438 * 9 8 6 36 36 H 1.08007 * 120.00155 * 0.02562 * 17 16 14 37 37 H 1.07996 * 119.78031 * 180.27558 * 18 17 16 38 38 H 1.08000 * 119.77457 * 179.97438 * 19 18 17 39 39 H 1.08011 * 120.00688 * 179.97438 * 20 19 18 40 40 H 1.08990 * 109.47261 * 89.97334 * 26 25 24 41 41 H 1.09004 * 109.47419 * 209.98186 * 26 25 24 42 42 H 1.09004 * 109.46564 * 329.96837 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5967 1.9657 2.3912 6 6 2.9829 3.4221 2.3645 7 1 3.4744 3.8346 1.4958 8 6 2.7078 4.2284 3.4486 9 7 2.1088 3.7262 4.5063 10 14 3.1859 6.0338 3.4151 11 1 3.8414 6.3484 2.1203 12 1 1.9692 6.8710 3.5697 13 1 4.1266 6.3175 4.5285 14 6 4.2147 0.7736 1.0135 15 8 4.9453 0.6994 1.9823 16 6 4.6647 0.2522 -0.2922 17 6 4.8090 1.1131 -1.3800 18 6 5.2305 0.6208 -2.5980 19 6 5.5134 -0.7267 -2.7506 20 6 5.3769 -1.5949 -1.6868 21 6 4.9523 -1.1175 -0.4476 22 6 4.8051 -2.0419 0.6943 23 7 4.4996 -1.7130 1.9282 24 7 4.4594 -2.7757 2.6523 25 6 4.7349 -3.8163 1.9150 26 6 4.7908 -5.2481 2.3821 27 8 4.9534 -3.3817 0.6629 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4027 -0.9314 33 1 1.5176 1.8782 2.5177 34 1 3.1011 1.4713 3.2215 35 1 1.9156 4.2933 5.2691 36 1 4.5917 2.1652 -1.2686 37 1 5.3454 1.2913 -3.4368 38 1 5.8421 -1.1005 -3.7091 39 1 5.5990 -2.6442 -1.8140 40 1 3.8060 -5.7031 2.2775 41 1 5.5119 -5.7993 1.7785 42 1 5.0954 -5.2772 3.4283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293945196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:27 Heat of formation + Delta-G solvation = 71.334814 kcal Electronic energy + Delta-G solvation = -28047.670139 eV Core-core repulsion = 24189.388723 eV Total energy + Delta-G solvation = -3858.281416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.00063 -39.96793 -37.96421 -36.03088 -35.53210 -33.46827 -33.11358 -32.07386 -31.34871 -31.23721 -27.96568 -27.42334 -25.53812 -24.56362 -23.55672 -22.92087 -21.86667 -21.59086 -19.92495 -18.92488 -17.57410 -17.33947 -16.69981 -16.49931 -16.22822 -15.56673 -15.32418 -14.93883 -14.58541 -14.41797 -14.21807 -13.94461 -13.69006 -13.56245 -13.02930 -12.98061 -12.73048 -12.63302 -12.21181 -12.08895 -11.96325 -11.63924 -11.60949 -11.28384 -11.21853 -10.98494 -10.82284 -10.64398 -10.51797 -10.18537 -10.13365 -9.54091 -9.23992 -9.03350 -8.80345 -8.54392 -8.35776 -7.54230 -5.96490 -4.01642 0.39827 1.06470 1.64347 2.18111 2.50873 2.65778 3.33738 3.38475 3.41905 3.45277 3.68835 3.77697 4.03057 4.34943 4.49463 4.61869 4.79388 4.87265 4.95807 5.06235 5.14529 5.19422 5.29743 5.31832 5.37097 5.41110 5.47101 5.47810 5.64534 5.72678 5.74675 5.77282 6.05727 6.12896 6.20088 6.23263 6.26847 6.62097 6.85040 6.97798 7.19282 7.61599 7.66239 8.00516 8.31688 8.47497 8.48997 8.97783 9.17406 9.62949 11.11412 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011530 B = 0.004459 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.778387 B = 6278.406423 C = 7127.526975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.133 3.867 4 N -0.585 5.585 5 C 0.250 3.750 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.892 5.892 10 Si 0.896 3.104 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.548 3.452 15 O -0.496 6.496 16 C -0.057 4.057 17 C -0.093 4.093 18 C -0.097 4.097 19 C -0.115 4.115 20 C -0.090 4.090 21 C 0.006 3.994 22 C 0.186 3.814 23 N -0.217 5.217 24 N -0.279 5.279 25 C 0.148 3.852 26 C -0.053 4.053 27 O -0.227 6.227 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.049 0.951 35 H 0.262 0.738 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 -15.446 -16.349 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.009 3.991 4 N -0.316 5.316 5 C 0.131 3.869 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.332 3.668 15 O -0.369 6.369 16 C -0.062 4.062 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.133 4.133 20 C -0.110 4.110 21 C 0.003 3.997 22 C -0.021 4.021 23 N -0.064 5.064 24 N -0.128 5.128 25 C -0.061 4.061 26 C -0.111 4.111 27 O -0.107 6.107 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.163 -14.716 -14.517 20.912 hybrid contribution 0.490 0.193 -0.948 1.085 sum 3.653 -14.523 -15.466 21.528 Atomic orbital electron populations 1.23763 0.95714 1.01643 1.01189 1.23380 0.96344 0.98944 0.99340 1.20662 0.93115 0.95191 0.90143 1.48053 1.12460 1.55634 1.15479 1.19293 0.95738 0.91935 0.79918 1.21487 1.39011 0.94116 1.01927 0.92428 1.24928 0.95160 0.98747 0.95208 1.69957 1.41708 1.35886 1.05529 0.86475 0.78123 0.84909 0.78078 1.19823 1.21041 1.20931 1.17786 0.83098 0.79150 0.86745 1.90816 1.53832 1.54733 1.37534 1.20377 0.98111 0.91729 0.95999 1.21308 0.98336 1.00283 0.91227 1.21306 0.97280 0.95633 0.97381 1.21118 1.00165 0.93364 0.98617 1.21120 0.98291 1.00438 0.91147 1.17070 1.04340 0.89321 0.88968 1.25460 1.01835 0.78749 0.96036 1.75386 1.13425 1.18876 0.98675 1.74634 1.16626 0.94416 1.27127 1.28096 0.99500 1.00400 0.78086 1.20311 1.04790 0.82898 1.03127 1.84733 1.69052 1.23221 1.33685 0.88155 0.89011 0.88662 0.89190 0.90760 0.95093 0.93323 0.92827 0.84012 0.84786 0.84931 0.84952 0.88466 0.89141 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 14.32 29.02 0.42 -2.25 16 2 C -0.16 -2.61 9.81 -36.03 -0.35 -2.97 16 3 C 0.13 2.34 5.64 -5.20 -0.03 2.31 16 4 N -0.58 -13.15 2.45 -177.63 -0.44 -13.58 16 5 C 0.25 6.84 5.18 -5.19 -0.03 6.82 16 6 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 10 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.55 12.37 5.63 -12.43 -0.07 12.30 16 15 O -0.50 -13.47 14.60 5.30 0.08 -13.39 16 16 C -0.06 -1.00 4.75 -104.64 -0.50 -1.49 16 17 C -0.09 -1.27 7.77 -39.22 -0.30 -1.57 16 18 C -0.10 -0.97 10.02 -39.57 -0.40 -1.37 16 19 C -0.11 -1.06 10.02 -39.56 -0.40 -1.46 16 20 C -0.09 -1.04 9.72 -39.23 -0.38 -1.42 16 21 C 0.01 0.09 5.90 -104.64 -0.62 -0.53 16 22 C 0.19 3.35 7.87 -13.94 -0.11 3.24 16 23 N -0.22 -4.70 8.73 32.04 0.28 -4.42 16 24 N -0.28 -5.41 12.22 32.58 0.40 -5.01 16 25 C 0.15 2.13 8.47 -12.85 -0.11 2.02 16 26 C -0.05 -0.41 10.51 36.01 0.38 -0.03 16 27 O -0.23 -3.40 10.68 4.16 0.04 -3.36 16 28 H 0.10 1.37 7.84 -52.49 -0.41 0.96 16 29 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.09 1.59 7.68 -51.93 -0.40 1.19 16 32 H 0.07 1.11 5.25 -51.93 -0.27 0.84 16 33 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.05 1.54 7.35 -51.93 -0.38 1.15 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.14 1.88 7.89 -52.48 -0.41 1.46 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 1.24 7.94 -52.48 -0.42 0.82 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -37.92 368.09 -6.51 -44.43 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.22 Total: -0.67 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.92 Total: -0.16 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.98 Total: -49.47 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.12 Total: -16.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.92 -6.51 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293945196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.765 kcal (2) G-P(sol) polarization free energy of solvation -37.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds