Wall clock time and date at job start Tue Mar 31 2020 15:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50697 * 119.99911 * 2 1 4 4 N 1.46499 * 109.47515 * 124.99698 * 3 2 1 5 5 C 1.46500 * 120.00409 * 264.91052 * 4 3 2 6 6 C 1.50697 * 109.47178 * 269.99473 * 5 4 3 7 7 H 1.07998 * 119.99902 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00134 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99930 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99845 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47677 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47169 * 120.00597 * 10 8 6 13 13 H 1.48502 * 109.46980 * 240.00397 * 10 8 6 14 14 C 1.34783 * 120.00127 * 84.90121 * 4 3 2 15 15 O 1.21572 * 120.00171 * 185.94517 * 14 4 3 16 16 C 1.47622 * 119.99593 * 5.95033 * 14 4 3 17 17 C 1.39462 * 120.22549 * 62.51277 * 16 14 4 18 18 C 1.37967 * 119.99585 * 179.97438 * 17 16 14 19 19 C 1.38535 * 120.44467 * 359.97438 * 18 17 16 20 20 C 1.37987 * 120.45273 * 0.02562 * 19 18 17 21 21 C 1.39416 * 119.99625 * 359.97438 * 20 19 18 22 22 C 1.47653 * 120.22236 * 180.02562 * 21 20 19 23 23 N 1.31301 * 126.37822 * 175.30369 * 22 21 20 24 24 N 1.28665 * 109.22575 * 180.02562 * 23 22 21 25 25 C 1.30481 * 109.51545 * 359.97438 * 24 23 22 26 26 C 1.50704 * 126.18298 * 180.02562 * 25 24 23 27 27 O 1.34329 * 107.64151 * 359.73646 * 25 24 23 28 28 H 1.07993 * 120.00318 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.99928 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00589 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47193 * 4.99874 * 3 2 1 32 32 H 1.09003 * 109.47625 * 245.00042 * 3 2 1 33 33 H 1.09006 * 109.46738 * 29.99386 * 5 4 3 34 34 H 1.09001 * 109.47547 * 149.99301 * 5 4 3 35 35 H 0.96995 * 120.00126 * 179.97438 * 9 8 6 36 36 H 1.08007 * 120.00155 * 0.02562 * 17 16 14 37 37 H 1.07996 * 119.78031 * 180.27558 * 18 17 16 38 38 H 1.08000 * 119.77457 * 179.97438 * 19 18 17 39 39 H 1.08011 * 120.00688 * 179.97438 * 20 19 18 40 40 H 1.08990 * 109.47261 * 89.97334 * 26 25 24 41 41 H 1.09004 * 109.47419 * 209.98186 * 26 25 24 42 42 H 1.09004 * 109.46564 * 329.96837 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5967 1.9657 2.3912 6 6 2.9829 3.4221 2.3645 7 1 3.4744 3.8346 1.4958 8 6 2.7078 4.2284 3.4486 9 7 2.1088 3.7262 4.5063 10 14 3.1859 6.0338 3.4151 11 1 3.8414 6.3484 2.1203 12 1 1.9692 6.8710 3.5697 13 1 4.1266 6.3175 4.5285 14 6 4.2147 0.7736 1.0135 15 8 4.9453 0.6994 1.9823 16 6 4.6647 0.2522 -0.2922 17 6 4.8090 1.1131 -1.3800 18 6 5.2305 0.6208 -2.5980 19 6 5.5134 -0.7267 -2.7506 20 6 5.3769 -1.5949 -1.6868 21 6 4.9523 -1.1175 -0.4476 22 6 4.8051 -2.0419 0.6943 23 7 4.4996 -1.7130 1.9282 24 7 4.4594 -2.7757 2.6523 25 6 4.7349 -3.8163 1.9150 26 6 4.7908 -5.2481 2.3821 27 8 4.9534 -3.3817 0.6629 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4027 -0.9314 33 1 1.5176 1.8782 2.5177 34 1 3.1011 1.4713 3.2215 35 1 1.9156 4.2933 5.2691 36 1 4.5917 2.1652 -1.2686 37 1 5.3454 1.2913 -3.4368 38 1 5.8421 -1.1005 -3.7091 39 1 5.5990 -2.6442 -1.8140 40 1 3.8060 -5.7031 2.2775 41 1 5.5119 -5.7993 1.7785 42 1 5.0954 -5.2772 3.4283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293945196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:26 Heat of formation + Delta-G solvation = 42.052200 kcal Electronic energy + Delta-G solvation = -28048.939928 eV Core-core repulsion = 24189.388723 eV Total energy + Delta-G solvation = -3859.551205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.24026 -41.31780 -39.32442 -37.33374 -37.16515 -35.15213 -34.50505 -33.73349 -32.46147 -32.24775 -29.56717 -28.85163 -27.02557 -26.04478 -25.01699 -24.22137 -23.15858 -22.80007 -21.29762 -20.32661 -18.79230 -18.62492 -18.57784 -18.07456 -17.54630 -17.25976 -16.47386 -16.34595 -16.04672 -15.82272 -15.44031 -15.18182 -14.91091 -14.49474 -14.33510 -14.19853 -14.10323 -13.77991 -13.63119 -13.49808 -13.31829 -13.09320 -12.98587 -12.87667 -12.74255 -12.61162 -12.37590 -12.26718 -12.20928 -11.87534 -11.64936 -11.26808 -10.69516 -10.65838 -10.45359 -9.99043 -9.65729 -9.41569 -8.20964 -6.37413 -0.69498 0.08921 0.55789 1.04559 1.22112 1.36171 1.39567 1.41610 1.51578 1.90434 2.30511 2.44110 2.68364 2.74958 3.08069 3.36160 3.54060 3.64455 3.91290 3.97349 4.03796 4.15776 4.20952 4.31436 4.33979 4.36304 4.41386 4.52352 4.59825 4.68841 4.74148 4.84812 4.93693 4.99147 5.00044 5.19198 5.27271 5.28756 5.35222 5.52699 5.60020 5.72022 5.78126 5.91765 6.06174 6.68888 6.76370 7.21454 7.28474 7.48877 8.86987 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011530 B = 0.004459 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.778387 B = 6278.406423 C = 7127.526975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.182 4.182 3 C 0.133 3.867 4 N -0.592 5.592 5 C 0.271 3.729 6 C -0.540 4.540 7 H 0.061 0.939 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.974 3.026 11 H -0.260 1.260 12 H -0.268 1.268 13 H -0.284 1.284 14 C 0.546 3.454 15 O -0.561 6.561 16 C -0.088 4.088 17 C -0.102 4.102 18 C -0.075 4.075 19 C -0.090 4.090 20 C -0.079 4.079 21 C -0.020 4.020 22 C 0.184 3.816 23 N -0.285 5.285 24 N -0.343 5.343 25 C 0.170 3.830 26 C -0.052 4.052 27 O -0.218 6.218 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.014 0.986 34 H -0.011 1.011 35 H 0.266 0.734 36 H 0.139 0.861 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.159 0.841 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 -16.168 -21.129 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.201 4.201 3 C 0.011 3.989 4 N -0.322 5.322 5 C 0.150 3.850 6 C -0.579 4.579 7 H 0.079 0.921 8 C -0.194 4.194 9 N -0.571 5.571 10 Si 0.797 3.203 11 H -0.184 1.184 12 H -0.193 1.193 13 H -0.210 1.210 14 C 0.334 3.666 15 O -0.439 6.439 16 C -0.093 4.093 17 C -0.121 4.121 18 C -0.093 4.093 19 C -0.107 4.107 20 C -0.099 4.099 21 C -0.023 4.023 22 C -0.024 4.024 23 N -0.130 5.130 24 N -0.190 5.190 25 C -0.040 4.040 26 C -0.109 4.109 27 O -0.098 6.098 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.032 0.968 34 H 0.007 0.993 35 H 0.075 0.925 36 H 0.157 0.843 37 H 0.197 0.803 38 H 0.202 0.798 39 H 0.176 0.824 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.765 -15.450 -19.332 25.032 hybrid contribution 0.285 0.253 0.454 0.592 sum 4.050 -15.197 -18.879 24.571 Atomic orbital electron populations 1.24021 0.95020 1.03103 0.98030 1.23188 0.96944 0.97794 1.02215 1.20863 0.92638 0.95884 0.89478 1.48005 1.13808 1.55386 1.15010 1.18627 0.93665 0.91634 0.81044 1.21741 1.39170 0.94632 1.02354 0.92109 1.25959 0.94752 1.04168 0.94508 1.70107 1.42670 1.38004 1.06344 0.85282 0.78228 0.78361 0.78404 1.18397 1.19289 1.21035 1.18602 0.82057 0.77620 0.88364 1.90751 1.55536 1.57055 1.40554 1.19952 1.01836 0.93275 0.94193 1.21421 0.99196 0.99730 0.91741 1.21797 0.94138 0.96804 0.96535 1.21737 0.96934 0.92457 0.99605 1.21504 0.96529 1.02242 0.89598 1.17329 1.06474 0.88366 0.90091 1.25912 1.00758 0.79928 0.95837 1.75286 1.16241 1.20728 1.00766 1.74496 1.20141 0.95493 1.28864 1.29374 0.95613 1.01698 0.77286 1.20777 1.07259 0.78928 1.03967 1.84745 1.69225 1.21966 1.33890 0.87264 0.86852 0.89698 0.89590 0.87803 0.96815 0.99314 0.92482 0.84315 0.80300 0.79750 0.82389 0.85922 0.85726 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.64 14.32 67.79 0.97 -3.67 16 2 C -0.18 -6.10 9.81 25.65 0.25 -5.85 16 3 C 0.13 4.88 5.64 85.63 0.48 5.36 16 4 N -0.59 -28.74 2.45 -834.17 -2.05 -30.79 16 5 C 0.27 16.25 5.18 85.63 0.44 16.70 16 6 C -0.54 -32.78 9.39 25.60 0.24 -32.54 16 7 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 8 C 0.00 0.28 5.46 84.66 0.46 0.74 16 9 N -0.93 -59.67 13.29 21.45 0.28 -59.38 16 10 Si 0.97 46.40 29.54 68.60 2.03 48.43 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 14 C 0.55 26.73 5.63 86.72 0.49 27.22 16 15 O -0.56 -33.81 14.60 -3.94 -0.06 -33.87 16 16 C -0.09 -3.15 4.75 -19.87 -0.09 -3.24 16 17 C -0.10 -2.64 7.77 22.50 0.17 -2.46 16 18 C -0.07 -1.11 10.02 22.28 0.22 -0.89 16 19 C -0.09 -1.13 10.02 22.28 0.22 -0.91 16 20 C -0.08 -1.55 9.72 22.49 0.22 -1.34 16 21 C -0.02 -0.64 5.90 -19.88 -0.12 -0.76 16 22 C 0.18 6.98 7.87 87.26 0.69 7.67 16 23 N -0.28 -13.53 8.73 -166.35 -1.45 -14.99 16 24 N -0.34 -14.44 12.22 -165.32 -2.02 -16.46 16 25 C 0.17 5.00 8.47 88.31 0.75 5.75 16 26 C -0.05 -0.71 10.51 71.24 0.75 0.04 16 27 O -0.22 -6.56 10.68 -8.03 -0.09 -6.65 16 28 H 0.11 2.89 7.84 -2.91 -0.02 2.87 16 29 H 0.11 2.71 8.06 -2.91 -0.02 2.68 16 30 H 0.08 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.09 3.14 7.68 -2.39 -0.02 3.12 16 32 H 0.10 3.10 5.25 -2.39 -0.01 3.09 16 33 H 0.01 0.85 8.07 -2.38 -0.02 0.83 16 34 H -0.01 -0.80 7.35 -2.39 -0.02 -0.82 16 35 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.14 3.56 7.89 -2.91 -0.02 3.54 16 37 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.16 2.26 7.94 -2.90 -0.02 2.24 16 40 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -96.51 368.09 3.84 -92.67 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.04 Total: 9.20 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 6.15 Total: 11.84 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -5.23 Total: -121.62 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -0.14 Total: -40.52 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -96.51 3.84 -92.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293945196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.727 kcal (2) G-P(sol) polarization free energy of solvation -96.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds