Wall clock time and date at job start Tue Mar 31 2020 15:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00285 * 2 1 4 4 N 1.46508 * 109.47132 * 124.99627 * 3 2 1 5 5 C 1.46495 * 120.00238 * 278.20022 * 4 3 2 6 6 C 1.50695 * 109.47358 * 270.00225 * 5 4 3 7 7 H 1.08004 * 120.00175 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00106 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00112 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00252 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47225 * 89.99621 * 10 8 6 12 12 H 1.48496 * 109.47143 * 210.00244 * 10 8 6 13 13 H 1.48501 * 109.46685 * 330.00238 * 10 8 6 14 14 C 1.34775 * 119.99703 * 98.20419 * 4 3 2 15 15 O 1.21566 * 120.00156 * 186.25238 * 14 4 3 16 16 C 1.47733 * 120.00146 * 6.24819 * 14 4 3 17 17 C 1.39731 * 119.99962 * 150.26849 * 16 14 4 18 18 C 1.37625 * 119.99557 * 180.02562 * 17 16 14 19 19 C 1.39715 * 120.00320 * 0.02562 * 18 17 16 20 20 C 1.47749 * 119.99495 * 179.97438 * 19 18 17 21 21 N 1.31268 * 126.38142 * 359.69419 * 20 19 18 22 22 N 1.28666 * 109.23359 * 180.25814 * 21 20 19 23 23 C 1.30478 * 109.51176 * 0.02562 * 22 21 20 24 24 C 1.50696 * 126.18074 * 179.97438 * 23 22 21 25 25 O 1.34334 * 107.63170 * 359.97438 * 23 22 21 26 26 C 1.39709 * 120.00260 * 0.27760 * 19 18 17 27 27 C 1.37626 * 119.99874 * 359.44273 * 26 19 18 28 28 H 1.08001 * 120.00153 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99313 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99920 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47405 * 5.00083 * 3 2 1 32 32 H 1.09001 * 109.47249 * 244.99899 * 3 2 1 33 33 H 1.09005 * 109.46943 * 29.99914 * 5 4 3 34 34 H 1.09000 * 109.47090 * 149.99573 * 5 4 3 35 35 H 0.97003 * 119.99874 * 179.97438 * 9 8 6 36 36 H 1.07999 * 120.00416 * 0.02562 * 17 16 14 37 37 H 1.08001 * 119.99816 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47165 * 270.01989 * 24 23 22 39 39 H 1.08994 * 109.47309 * 30.02629 * 24 23 22 40 40 H 1.09004 * 109.46953 * 150.02555 * 24 23 22 41 41 H 1.08000 * 119.99811 * 179.72794 * 26 19 18 42 42 H 1.07997 * 119.99724 * 180.27693 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5128 1.6945 2.4669 6 6 2.6341 3.1845 2.6570 7 1 3.0296 3.7999 1.8624 8 6 2.2403 3.7622 3.8453 9 7 2.3467 5.0625 4.0114 10 14 1.5555 2.6980 5.2194 11 1 2.6662 2.2449 6.0949 12 1 0.5847 3.4870 6.0195 13 1 0.8714 1.5161 4.6360 14 6 4.2922 1.0228 0.9439 15 8 5.0399 0.9338 1.8983 16 6 4.8067 0.7921 -0.4216 17 6 6.1394 1.0830 -0.7244 18 6 6.6185 0.8686 -1.9966 19 6 5.7723 0.3605 -2.9854 20 6 6.2867 0.1309 -4.3513 21 7 7.5078 0.3640 -4.7729 22 7 7.5934 0.0509 -6.0179 23 6 6.4391 -0.3904 -6.4367 24 6 6.1191 -0.8590 -7.8327 25 8 5.5876 -0.3514 -5.3984 26 6 4.4381 0.0756 -2.6844 27 6 3.9604 0.2846 -1.4107 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1317 0.0896 32 1 2.6214 1.4025 -0.9314 33 1 1.4686 1.3990 2.5696 34 1 3.1111 1.1821 3.2202 35 1 2.0692 5.4689 4.8474 36 1 6.7935 1.4761 0.0398 37 1 7.6487 1.0930 -2.2306 38 1 5.7704 -0.0153 -8.4282 39 1 7.0149 -1.2802 -8.2889 40 1 5.3403 -1.6205 -7.7907 41 1 3.7829 -0.3129 -3.4499 42 1 2.9302 0.0602 -1.1768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294004446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:32 Heat of formation + Delta-G solvation = 88.828659 kcal Electronic energy + Delta-G solvation = -26599.898720 eV Core-core repulsion = 22742.375894 eV Total energy + Delta-G solvation = -3857.522826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.42915 -40.39350 -38.24674 -36.47368 -36.19757 -33.81329 -33.28006 -32.28618 -31.60546 -31.29449 -28.80732 -27.79851 -26.14940 -24.84021 -23.58741 -22.77779 -22.18417 -21.67884 -20.32766 -19.07638 -18.01854 -17.73271 -17.05685 -16.94264 -16.75654 -15.89257 -15.43444 -15.05121 -14.81195 -14.40521 -14.33663 -14.06940 -13.85166 -13.72964 -13.38585 -13.21221 -13.16751 -12.82687 -12.65767 -12.47675 -12.22748 -12.12268 -11.78275 -11.64878 -11.34881 -11.34763 -11.07344 -10.81433 -10.58007 -10.40102 -10.17425 -9.66044 -9.47378 -9.30358 -9.09072 -8.68426 -8.63255 -7.88250 -6.13519 -4.13319 0.06474 1.14539 1.25583 1.84253 2.13772 2.20317 3.10973 3.26124 3.32106 3.34273 3.41945 3.57541 3.88660 3.98705 4.35418 4.42718 4.64573 4.67998 4.78028 4.79353 4.91050 5.00658 5.03674 5.09901 5.11916 5.18446 5.20506 5.31054 5.39701 5.40497 5.54354 5.78291 5.85083 5.99750 6.05539 6.09613 6.22371 6.54012 6.58863 6.64535 6.72106 6.87962 7.20223 7.54155 7.97067 8.05156 8.39537 8.73498 8.89551 9.45986 10.99522 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.002688 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.660097 B =10412.398599 C =11142.552773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.184 4.184 3 C 0.103 3.897 4 N -0.576 5.576 5 C 0.216 3.784 6 C -0.533 4.533 7 H 0.076 0.924 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.547 3.453 15 O -0.529 6.529 16 C -0.088 4.088 17 C -0.066 4.066 18 C -0.071 4.071 19 C -0.021 4.021 20 C 0.216 3.784 21 N -0.275 5.275 22 N -0.286 5.286 23 C 0.158 3.842 24 C -0.057 4.057 25 O -0.220 6.220 26 C -0.091 4.091 27 C -0.124 4.124 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.135 0.865 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 -13.640 -21.615 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.203 4.203 3 C -0.020 4.020 4 N -0.306 5.306 5 C 0.096 3.904 6 C -0.571 4.571 7 H 0.094 0.906 8 C -0.129 4.129 9 N -0.533 5.533 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.333 3.667 15 O -0.407 6.407 16 C -0.092 4.092 17 C -0.084 4.084 18 C -0.091 4.091 19 C -0.023 4.023 20 C 0.009 3.991 21 N -0.122 5.122 22 N -0.134 5.134 23 C -0.052 4.052 24 C -0.115 4.115 25 O -0.100 6.100 26 C -0.110 4.110 27 C -0.142 4.142 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.153 0.847 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.166 -13.162 -20.973 24.856 hybrid contribution -1.646 -0.684 0.731 1.926 sum 0.520 -13.847 -20.242 24.531 Atomic orbital electron populations 1.23914 0.95738 1.02142 0.98732 1.23358 0.96537 0.98927 1.01469 1.21468 0.93727 0.95604 0.91185 1.47787 1.06749 1.65317 1.10723 1.19723 0.94744 0.96999 0.78928 1.21301 1.43426 0.90327 1.02063 0.90638 1.24839 0.95115 0.94885 0.98018 1.69895 1.47567 1.09798 1.26055 0.86867 0.79468 0.80752 0.82749 1.19818 1.21011 1.18996 1.18112 0.82604 0.78184 0.87755 1.90774 1.56326 1.51462 1.42096 1.20515 0.94706 0.99230 0.94702 1.21249 0.94331 0.96752 0.96117 1.21116 1.00106 0.96490 0.91346 1.17376 0.94703 1.04961 0.85293 1.25528 0.86983 0.96697 0.89922 1.74758 1.15630 1.18349 1.03495 1.74449 1.20489 1.14599 1.03820 1.28059 0.84659 0.99751 0.92716 1.20369 1.04940 1.02867 0.83332 1.84809 1.41985 1.64493 1.18688 1.21156 0.93531 0.98911 0.97434 1.22389 1.01611 0.98137 0.92014 0.88417 0.87943 0.87145 0.89217 0.87720 0.94875 0.94200 0.92476 0.83492 0.83761 0.88189 0.87459 0.88796 0.84685 0.81389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 14.32 29.01 0.42 -1.43 16 2 C -0.18 -2.27 8.22 -36.03 -0.30 -2.56 16 3 C 0.10 1.54 5.33 -5.19 -0.03 1.52 16 4 N -0.58 -11.47 2.45 -177.59 -0.43 -11.90 16 5 C 0.22 5.15 4.28 -5.20 -0.02 5.13 16 6 C -0.53 -14.94 9.94 -34.44 -0.34 -15.28 16 7 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 10 Si 0.87 21.21 27.47 -169.99 -4.67 16.55 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 14 C 0.55 10.97 7.45 -12.38 -0.09 10.88 16 15 O -0.53 -12.69 16.25 5.31 0.09 -12.60 16 16 C -0.09 -1.36 5.59 -104.91 -0.59 -1.94 16 17 C -0.07 -0.93 9.58 -39.25 -0.38 -1.31 16 18 C -0.07 -0.88 9.68 -39.25 -0.38 -1.26 16 19 C -0.02 -0.26 5.88 -104.91 -0.62 -0.87 16 20 C 0.22 2.70 7.98 -13.91 -0.11 2.58 16 21 N -0.28 -3.84 11.91 32.06 0.38 -3.46 16 22 N -0.29 -3.64 12.22 32.58 0.40 -3.24 16 23 C 0.16 1.51 8.47 -12.86 -0.11 1.40 16 24 C -0.06 -0.22 10.51 36.00 0.38 0.16 16 25 O -0.22 -2.38 10.65 4.18 0.04 -2.34 16 26 C -0.09 -0.98 9.71 -39.26 -0.38 -1.36 16 27 C -0.12 -1.51 7.46 -39.25 -0.29 -1.80 16 28 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.10 1.12 7.84 -52.48 -0.41 0.71 16 30 H 0.11 1.26 7.59 -52.49 -0.40 0.86 16 31 H 0.09 1.41 7.78 -51.93 -0.40 1.01 16 32 H 0.11 1.35 4.05 -52.04 -0.21 1.14 16 33 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 34 H 0.04 1.02 6.77 -51.93 -0.35 0.67 16 35 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.15 2.10 7.91 -52.49 -0.42 1.69 16 37 H 0.14 1.62 7.85 -52.49 -0.41 1.20 16 38 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 41 H 0.14 1.12 7.92 -52.49 -0.42 0.71 16 42 H 0.17 1.84 2.81 -52.49 -0.15 1.69 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -35.59 362.02 -5.72 -41.31 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -4.82 Total: 0.74 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.94 Total: -4.12 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 1.12 Total: -44.99 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.13 Total: -14.94 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.59 -5.72 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294004446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.142 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds