Wall clock time and date at job start Tue Mar 31 2020 15:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00285 * 2 1 4 4 N 1.46508 * 109.47132 * 124.99627 * 3 2 1 5 5 C 1.46495 * 120.00238 * 278.20022 * 4 3 2 6 6 C 1.50695 * 109.47358 * 270.00225 * 5 4 3 7 7 H 1.08004 * 120.00175 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00106 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00112 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00252 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47225 * 89.99621 * 10 8 6 12 12 H 1.48496 * 109.47143 * 210.00244 * 10 8 6 13 13 H 1.48501 * 109.46685 * 330.00238 * 10 8 6 14 14 C 1.34775 * 119.99703 * 98.20419 * 4 3 2 15 15 O 1.21566 * 120.00156 * 186.25238 * 14 4 3 16 16 C 1.47733 * 120.00146 * 6.24819 * 14 4 3 17 17 C 1.39731 * 119.99962 * 150.26849 * 16 14 4 18 18 C 1.37625 * 119.99557 * 180.02562 * 17 16 14 19 19 C 1.39715 * 120.00320 * 0.02562 * 18 17 16 20 20 C 1.47749 * 119.99495 * 179.97438 * 19 18 17 21 21 N 1.31268 * 126.38142 * 359.69419 * 20 19 18 22 22 N 1.28666 * 109.23359 * 180.25814 * 21 20 19 23 23 C 1.30478 * 109.51176 * 0.02562 * 22 21 20 24 24 C 1.50696 * 126.18074 * 179.97438 * 23 22 21 25 25 O 1.34334 * 107.63170 * 359.97438 * 23 22 21 26 26 C 1.39709 * 120.00260 * 0.27760 * 19 18 17 27 27 C 1.37626 * 119.99874 * 359.44273 * 26 19 18 28 28 H 1.08001 * 120.00153 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99313 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99920 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47405 * 5.00083 * 3 2 1 32 32 H 1.09001 * 109.47249 * 244.99899 * 3 2 1 33 33 H 1.09005 * 109.46943 * 29.99914 * 5 4 3 34 34 H 1.09000 * 109.47090 * 149.99573 * 5 4 3 35 35 H 0.97003 * 119.99874 * 179.97438 * 9 8 6 36 36 H 1.07999 * 120.00416 * 0.02562 * 17 16 14 37 37 H 1.08001 * 119.99816 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47165 * 270.01989 * 24 23 22 39 39 H 1.08994 * 109.47309 * 30.02629 * 24 23 22 40 40 H 1.09004 * 109.46953 * 150.02555 * 24 23 22 41 41 H 1.08000 * 119.99811 * 179.72794 * 26 19 18 42 42 H 1.07997 * 119.99724 * 180.27693 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5128 1.6945 2.4669 6 6 2.6341 3.1845 2.6570 7 1 3.0296 3.7999 1.8624 8 6 2.2403 3.7622 3.8453 9 7 2.3467 5.0625 4.0114 10 14 1.5555 2.6980 5.2194 11 1 2.6662 2.2449 6.0949 12 1 0.5847 3.4870 6.0195 13 1 0.8714 1.5161 4.6360 14 6 4.2922 1.0228 0.9439 15 8 5.0399 0.9338 1.8983 16 6 4.8067 0.7921 -0.4216 17 6 6.1394 1.0830 -0.7244 18 6 6.6185 0.8686 -1.9966 19 6 5.7723 0.3605 -2.9854 20 6 6.2867 0.1309 -4.3513 21 7 7.5078 0.3640 -4.7729 22 7 7.5934 0.0509 -6.0179 23 6 6.4391 -0.3904 -6.4367 24 6 6.1191 -0.8590 -7.8327 25 8 5.5876 -0.3514 -5.3984 26 6 4.4381 0.0756 -2.6844 27 6 3.9604 0.2846 -1.4107 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1317 0.0896 32 1 2.6214 1.4025 -0.9314 33 1 1.4686 1.3990 2.5696 34 1 3.1111 1.1821 3.2202 35 1 2.0692 5.4689 4.8474 36 1 6.7935 1.4761 0.0398 37 1 7.6487 1.0930 -2.2306 38 1 5.7704 -0.0153 -8.4282 39 1 7.0149 -1.2802 -8.2889 40 1 5.3403 -1.6205 -7.7907 41 1 3.7829 -0.3129 -3.4499 42 1 2.9302 0.0602 -1.1768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294004446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:31 Heat of formation + Delta-G solvation = 61.878969 kcal Electronic energy + Delta-G solvation = -26601.067346 eV Core-core repulsion = 22742.375894 eV Total energy + Delta-G solvation = -3858.691452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.28082 -41.69021 -39.52171 -37.61962 -37.33899 -35.24935 -34.49204 -33.84468 -32.60856 -32.29415 -30.29011 -28.87344 -27.37663 -26.06187 -24.75852 -24.02075 -23.12238 -22.91544 -21.46194 -20.35435 -19.10737 -18.97015 -18.57643 -18.36851 -17.81197 -17.19494 -16.60398 -16.22691 -16.09949 -15.90617 -15.38524 -15.17612 -15.09674 -14.56021 -14.49657 -14.31620 -14.21229 -13.81386 -13.70392 -13.55277 -13.53122 -13.33518 -13.07221 -13.06037 -12.80589 -12.52422 -12.32542 -12.21309 -12.00215 -11.85947 -11.75329 -11.30470 -10.87694 -10.83625 -10.47439 -10.08126 -9.74637 -9.50264 -8.35300 -6.41161 -0.92731 0.16025 0.34835 1.03969 1.20177 1.25404 1.32990 1.36615 1.44898 1.76573 2.21768 2.29980 2.63518 2.65843 2.98978 3.27448 3.41418 3.64562 3.74566 3.88988 3.99941 4.06385 4.09352 4.16671 4.31876 4.32910 4.35000 4.51795 4.59387 4.71907 4.74086 4.81942 4.84625 4.88929 5.02479 5.06305 5.06628 5.10588 5.20269 5.40580 5.44506 5.55458 5.69178 5.87808 6.20316 6.51990 6.60471 7.10941 7.12694 7.26889 8.81346 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.002688 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.660097 B =10412.398599 C =11142.552773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.200 4.200 3 C 0.098 3.902 4 N -0.583 5.583 5 C 0.227 3.773 6 C -0.539 4.539 7 H 0.030 0.970 8 C 0.014 3.986 9 N -0.943 5.943 10 Si 0.945 3.055 11 H -0.277 1.277 12 H -0.274 1.274 13 H -0.237 1.237 14 C 0.539 3.461 15 O -0.584 6.584 16 C -0.110 4.110 17 C -0.075 4.075 18 C -0.069 4.069 19 C -0.015 4.015 20 C 0.206 3.794 21 N -0.301 5.301 22 N -0.327 5.327 23 C 0.179 3.821 24 C -0.059 4.059 25 O -0.217 6.217 26 C -0.073 4.073 27 C -0.110 4.110 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.269 0.731 36 H 0.133 0.867 37 H 0.152 0.848 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.172 0.828 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -16.477 -24.238 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.218 4.218 3 C -0.023 4.023 4 N -0.311 5.311 5 C 0.105 3.895 6 C -0.577 4.577 7 H 0.048 0.952 8 C -0.185 4.185 9 N -0.583 5.583 10 Si 0.768 3.232 11 H -0.202 1.202 12 H -0.199 1.199 13 H -0.160 1.160 14 C 0.329 3.671 15 O -0.465 6.465 16 C -0.114 4.114 17 C -0.094 4.094 18 C -0.088 4.088 19 C -0.017 4.017 20 C -0.002 4.002 21 N -0.147 5.147 22 N -0.174 5.174 23 C -0.031 4.031 24 C -0.116 4.116 25 O -0.097 6.097 26 C -0.092 4.092 27 C -0.127 4.127 28 H 0.142 0.858 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.095 0.905 32 H 0.143 0.857 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.169 0.831 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.189 0.811 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.128 -16.012 -23.666 28.573 hybrid contribution -0.904 0.236 1.300 1.600 sum -1.032 -15.776 -22.366 27.390 Atomic orbital electron populations 1.24165 0.95247 1.03377 0.95802 1.23191 0.96916 0.97705 1.04020 1.21764 0.93133 0.97166 0.90232 1.47845 1.07753 1.64824 1.10678 1.19353 0.95391 0.93721 0.81070 1.21521 1.42765 0.92385 1.01046 0.95165 1.25820 0.95488 0.96242 1.00926 1.70047 1.49137 1.11965 1.27125 0.85750 0.78838 0.79705 0.78913 1.20223 1.19925 1.15967 1.18826 0.82165 0.76955 0.89164 1.90722 1.57561 1.54013 1.44242 1.20210 0.95697 1.02413 0.93061 1.21160 0.93972 0.97507 0.96739 1.21100 1.00658 0.96398 0.90640 1.17492 0.95188 1.03914 0.85108 1.25414 0.86967 0.97543 0.90316 1.74687 1.16641 1.18931 1.04486 1.74411 1.22369 1.17032 1.03598 1.29229 0.83481 0.96567 0.93796 1.20805 1.06501 1.04293 0.79989 1.84825 1.41903 1.64413 1.18573 1.21452 0.93222 0.97237 0.97321 1.22465 1.01724 0.96949 0.91611 0.85756 0.88096 0.85730 0.90459 0.85699 0.92922 0.96009 0.92203 0.84885 0.83062 0.86034 0.86104 0.86296 0.81065 0.79719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 14.32 67.78 0.97 -1.76 16 2 C -0.20 -4.37 8.22 25.64 0.21 -4.16 16 3 C 0.10 2.85 5.33 85.63 0.46 3.31 16 4 N -0.58 -23.61 2.45 -834.05 -2.04 -25.65 16 5 C 0.23 10.96 4.28 85.63 0.37 11.33 16 6 C -0.54 -31.49 9.94 25.60 0.25 -31.23 16 7 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 8 C 0.01 0.80 5.47 84.65 0.46 1.26 16 9 N -0.94 -59.31 13.96 21.45 0.30 -59.01 16 10 Si 0.95 44.05 27.47 68.60 1.88 45.93 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 13 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 14 C 0.54 22.56 7.45 86.75 0.65 23.20 16 15 O -0.58 -29.74 16.25 -3.93 -0.06 -29.81 16 16 C -0.11 -3.46 5.59 -20.05 -0.11 -3.57 16 17 C -0.07 -2.22 9.58 22.49 0.22 -2.01 16 18 C -0.07 -1.70 9.68 22.48 0.22 -1.49 16 19 C -0.01 -0.33 5.88 -20.05 -0.12 -0.45 16 20 C 0.21 4.78 7.98 87.29 0.70 5.48 16 21 N -0.30 -8.15 11.91 -166.32 -1.98 -10.13 16 22 N -0.33 -7.91 12.22 -165.33 -2.02 -9.93 16 23 C 0.18 2.93 8.47 88.31 0.75 3.68 16 24 C -0.06 -0.22 10.51 71.23 0.75 0.53 16 25 O -0.22 -4.06 10.65 -7.95 -0.08 -4.14 16 26 C -0.07 -1.35 9.71 22.48 0.22 -1.13 16 27 C -0.11 -2.47 7.46 22.48 0.17 -2.30 16 28 H 0.12 1.68 8.06 -2.91 -0.02 1.66 16 29 H 0.10 1.90 7.84 -2.91 -0.02 1.88 16 30 H 0.12 2.42 7.59 -2.91 -0.02 2.40 16 31 H 0.08 2.42 7.78 -2.38 -0.02 2.40 16 32 H 0.13 3.05 4.05 -2.49 -0.01 3.04 16 33 H 0.05 2.33 7.13 -2.38 -0.02 2.32 16 34 H 0.02 1.14 6.77 -2.39 -0.02 1.12 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.13 4.21 7.91 -2.91 -0.02 4.19 16 37 H 0.15 3.47 7.85 -2.91 -0.02 3.45 16 38 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.12 -0.08 8.14 -2.38 -0.02 -0.10 16 41 H 0.17 1.99 7.92 -2.91 -0.02 1.97 16 42 H 0.19 3.54 2.81 -2.91 -0.01 3.53 16 Total: -1.00 -83.29 362.02 3.15 -80.14 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.01 Total: 11.92 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 6.15 Total: 0.68 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -5.74 Total: -104.72 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.15 Total: -33.95 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -83.29 3.15 -80.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294004446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.021 kcal (2) G-P(sol) polarization free energy of solvation -83.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds