Wall clock time and date at job start Tue Mar 31 2020 15:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00390 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99688 * 3 2 1 5 5 C 1.46504 * 120.00271 * 269.99875 * 4 3 2 6 6 C 1.50695 * 109.47163 * 270.00704 * 5 4 3 7 7 H 1.08004 * 120.00361 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99906 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99810 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99850 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47016 * 90.00468 * 10 8 6 12 12 H 1.48502 * 109.47123 * 209.99843 * 10 8 6 13 13 H 1.48501 * 109.47321 * 329.99922 * 10 8 6 14 14 C 1.34777 * 119.99875 * 90.00619 * 4 3 2 15 15 O 1.21623 * 119.99973 * 179.97438 * 14 4 3 16 16 C 1.47286 * 120.00030 * 0.27044 * 14 4 3 17 17 C 1.37208 * 128.57948 * 269.75396 * 16 14 4 18 18 C 1.50706 * 126.72109 * 0.02562 * 17 16 14 19 19 O 1.33495 * 106.55944 * 179.97438 * 17 16 14 20 20 N 1.20657 * 113.38897 * 0.02562 * 19 17 16 21 21 C 1.30869 * 112.09932 * 359.71290 * 20 19 17 22 22 C 1.48333 * 127.44259 * 180.26701 * 21 20 19 23 23 C 1.39798 * 120.53842 * 325.18765 * 22 21 20 24 24 C 1.38408 * 118.30681 * 180.02562 * 23 22 21 25 25 C 1.38322 * 119.28634 * 0.02562 * 24 23 22 26 26 N 1.31895 * 121.03366 * 0.02562 * 25 24 23 27 27 C 1.31747 * 121.85587 * 359.65524 * 26 25 24 28 28 H 1.08005 * 119.99858 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00050 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.99858 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46699 * 4.99708 * 3 2 1 32 32 H 1.09004 * 109.47163 * 245.00280 * 3 2 1 33 33 H 1.08994 * 109.46719 * 30.00276 * 5 4 3 34 34 H 1.08996 * 109.47068 * 150.00171 * 5 4 3 35 35 H 0.97004 * 119.99826 * 180.02562 * 9 8 6 36 36 H 1.08993 * 109.47184 * 90.00341 * 18 17 16 37 37 H 1.09002 * 109.46868 * 210.00095 * 18 17 16 38 38 H 1.09000 * 109.47183 * 330.00159 * 18 17 16 39 39 H 1.07994 * 120.84981 * 0.02678 * 23 22 21 40 40 H 1.08001 * 120.35864 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.48247 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.70379 * 180.31554 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8442 3.3436 2.4803 7 1 3.3040 3.8369 1.6367 8 6 2.5184 4.0668 3.6082 9 7 1.9581 3.4662 4.6353 10 14 2.8728 5.8995 3.6772 11 1 1.7006 6.6502 3.1599 12 1 3.1361 6.3002 5.0827 13 1 4.0634 6.2052 2.8440 14 6 4.2497 0.8661 0.9824 15 8 5.0221 0.8887 1.9216 16 6 4.6888 0.3358 -0.3196 17 6 4.6190 -0.9526 -0.7862 18 6 4.0630 -2.1471 -0.0546 19 8 5.1391 -0.9407 -2.0157 20 7 5.5132 0.1513 -2.3669 21 6 5.3082 1.0609 -1.4486 22 6 5.6310 2.5068 -1.5235 23 6 6.7678 2.9463 -2.2082 24 6 7.0250 4.3056 -2.2485 25 6 6.1576 5.1775 -1.6155 26 7 5.0931 4.7330 -0.9761 27 6 4.8038 3.4491 -0.9159 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4888 1.6967 2.5459 34 1 3.0989 1.3603 3.2260 35 1 1.7285 3.9750 5.4286 36 1 2.9990 -2.2427 -0.2708 37 1 4.5826 -3.0478 -0.3819 38 1 4.2055 -2.0150 1.0179 39 1 7.4284 2.2431 -2.6933 40 1 7.8937 4.6816 -2.7685 41 1 6.3555 6.2388 -1.6446 42 1 3.9202 3.1238 -0.3871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294015973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:45 Heat of formation + Delta-G solvation = 89.737942 kcal Electronic energy + Delta-G solvation = -28367.239613 eV Core-core repulsion = 24509.756217 eV Total energy + Delta-G solvation = -3857.483396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.83097 -40.03714 -39.10177 -35.78544 -34.53872 -33.72193 -33.12092 -32.23980 -32.05530 -30.71759 -28.44020 -27.47840 -25.77072 -24.89400 -24.03536 -23.33524 -22.27002 -20.48548 -20.05759 -18.85317 -17.79185 -17.40891 -17.15942 -16.57408 -16.27617 -16.02463 -15.70608 -15.17887 -14.77429 -14.43590 -14.21492 -13.91346 -13.77979 -13.52565 -13.38878 -13.10248 -12.95204 -12.79355 -12.55991 -12.16777 -11.94079 -11.74322 -11.39803 -11.29173 -11.06887 -10.88337 -10.80975 -10.61186 -10.18922 -9.75937 -9.68183 -9.48348 -9.40921 -9.29274 -9.13690 -8.80387 -8.42742 -7.85205 -6.04989 -4.09582 0.70768 1.25313 1.37502 2.14859 2.37988 2.81092 3.01806 3.34194 3.40378 3.49310 3.66947 3.82449 3.98175 4.32570 4.47508 4.58330 4.80330 4.83613 4.84565 4.96281 5.06307 5.10785 5.18927 5.21235 5.30625 5.38506 5.40147 5.51045 5.56000 5.69201 5.76580 5.84049 5.95003 6.02757 6.11387 6.12689 6.64179 6.71491 6.82128 6.98158 7.33712 7.43750 7.91502 8.02189 8.16116 8.17551 8.20319 8.75496 8.97107 9.56461 11.03140 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009138 B = 0.006257 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.238965 B = 4473.604798 C = 6549.568394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 C 0.132 3.868 4 N -0.580 5.580 5 C 0.247 3.753 6 C -0.529 4.529 7 H 0.063 0.937 8 C 0.065 3.935 9 N -0.894 5.894 10 Si 0.894 3.106 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.582 3.418 15 O -0.518 6.518 16 C -0.215 4.215 17 C 0.005 3.995 18 C -0.079 4.079 19 O 0.102 5.898 20 N -0.347 5.347 21 C 0.090 3.910 22 C -0.080 4.080 23 C -0.047 4.047 24 C -0.178 4.178 25 C 0.108 3.892 26 N -0.470 5.470 27 C 0.141 3.859 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.159 0.841 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -7.339 -14.923 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.009 3.991 4 N -0.310 5.310 5 C 0.129 3.871 6 C -0.567 4.567 7 H 0.081 0.919 8 C -0.137 4.137 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.194 1.194 14 C 0.366 3.634 15 O -0.394 6.394 16 C -0.222 4.222 17 C -0.058 4.058 18 C -0.136 4.136 19 O 0.037 5.963 20 N -0.050 5.050 21 C -0.070 4.070 22 C -0.083 4.083 23 C -0.074 4.074 24 C -0.198 4.198 25 C -0.049 4.049 26 N -0.177 5.177 27 C -0.018 4.018 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.176 0.824 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.372 -6.667 -15.011 16.767 hybrid contribution 0.517 0.578 0.400 0.873 sum 3.889 -6.089 -14.611 16.300 Atomic orbital electron populations 1.23838 0.95729 1.01940 0.99979 1.23466 0.96435 0.98874 1.00439 1.20644 0.93062 0.95964 0.89451 1.48272 1.09703 1.59029 1.14031 1.19402 0.95712 0.94057 0.77950 1.21439 1.40791 0.92916 1.01593 0.91932 1.24879 0.94874 0.98723 0.95237 1.69932 1.41954 1.36196 1.05224 0.86537 0.79046 0.85039 0.77226 1.20574 1.21274 1.19402 1.16838 0.82801 0.78810 0.84945 1.90826 1.52756 1.55501 1.40348 1.22302 1.08678 0.93305 0.97945 1.24429 0.98579 0.96878 0.85900 1.20544 1.01297 0.92003 0.99755 1.84458 1.57616 1.26058 1.28208 1.73906 1.18233 0.90973 1.21889 1.22689 1.00606 0.94070 0.89685 1.18666 0.98006 0.88868 1.02773 1.21573 0.94813 0.96206 0.94796 1.22062 1.01686 0.93517 1.02557 1.23005 0.89619 1.00681 0.91604 1.67837 1.18341 1.16138 1.15393 1.23209 0.98166 0.87544 0.92850 0.88165 0.88588 0.87612 0.88826 0.91314 0.94438 0.93644 0.92736 0.88766 0.89158 0.88394 0.84564 0.84303 0.82371 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 14.32 29.02 0.42 -1.73 16 2 C -0.17 -2.34 9.85 -36.02 -0.35 -2.70 16 3 C 0.13 2.15 4.83 -5.19 -0.03 2.13 16 4 N -0.58 -11.79 1.91 -177.76 -0.34 -12.13 16 5 C 0.25 6.18 5.16 -5.19 -0.03 6.16 16 6 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 7 H 0.06 1.73 7.18 -52.48 -0.38 1.36 16 8 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 10 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.58 12.10 6.32 -12.58 -0.08 12.02 16 15 O -0.52 -13.11 16.69 5.26 0.09 -13.02 16 16 C -0.21 -3.66 4.38 -102.69 -0.45 -4.11 16 17 C 0.00 0.07 7.51 -34.68 -0.26 -0.19 16 18 C -0.08 -0.76 9.81 36.01 0.35 -0.41 16 19 O 0.10 1.40 11.05 18.65 0.21 1.61 16 20 N -0.35 -5.30 12.06 34.60 0.42 -4.88 16 21 C 0.09 1.49 6.83 -80.22 -0.55 0.94 16 22 C -0.08 -1.33 5.89 -104.76 -0.62 -1.95 16 23 C -0.05 -0.65 9.93 -38.94 -0.39 -1.03 16 24 C -0.18 -2.14 10.10 -39.49 -0.40 -2.53 16 25 C 0.11 1.50 11.17 -17.49 -0.20 1.30 16 26 N -0.47 -8.48 10.35 -12.96 -0.13 -8.61 16 27 C 0.14 2.60 10.50 -17.18 -0.18 2.42 16 28 H 0.10 1.21 7.84 -52.48 -0.41 0.80 16 29 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.11 1.27 5.28 -52.48 -0.28 1.00 16 31 H 0.09 1.55 7.72 -51.93 -0.40 1.15 16 32 H 0.07 1.05 6.30 -51.93 -0.33 0.73 16 33 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.09 0.75 6.07 -51.93 -0.32 0.43 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.17 3.30 4.73 -52.49 -0.25 3.05 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -33.98 365.02 -6.55 -40.54 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.83 Total: 2.15 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -3.17 Total: -2.82 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.68 Total: -50.99 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.29 Total: -11.42 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.98 -6.55 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294015973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.274 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds