Wall clock time and date at job start Tue Mar 31 2020 15:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00390 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99688 * 3 2 1 5 5 C 1.46504 * 120.00271 * 269.99875 * 4 3 2 6 6 C 1.50695 * 109.47163 * 270.00704 * 5 4 3 7 7 H 1.08004 * 120.00361 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99906 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99810 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99850 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47016 * 90.00468 * 10 8 6 12 12 H 1.48502 * 109.47123 * 209.99843 * 10 8 6 13 13 H 1.48501 * 109.47321 * 329.99922 * 10 8 6 14 14 C 1.34777 * 119.99875 * 90.00619 * 4 3 2 15 15 O 1.21623 * 119.99973 * 179.97438 * 14 4 3 16 16 C 1.47286 * 120.00030 * 0.27044 * 14 4 3 17 17 C 1.37208 * 128.57948 * 269.75396 * 16 14 4 18 18 C 1.50706 * 126.72109 * 0.02562 * 17 16 14 19 19 O 1.33495 * 106.55944 * 179.97438 * 17 16 14 20 20 N 1.20657 * 113.38897 * 0.02562 * 19 17 16 21 21 C 1.30869 * 112.09932 * 359.71290 * 20 19 17 22 22 C 1.48333 * 127.44259 * 180.26701 * 21 20 19 23 23 C 1.39798 * 120.53842 * 325.18765 * 22 21 20 24 24 C 1.38408 * 118.30681 * 180.02562 * 23 22 21 25 25 C 1.38322 * 119.28634 * 0.02562 * 24 23 22 26 26 N 1.31895 * 121.03366 * 0.02562 * 25 24 23 27 27 C 1.31747 * 121.85587 * 359.65524 * 26 25 24 28 28 H 1.08005 * 119.99858 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00050 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.99858 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46699 * 4.99708 * 3 2 1 32 32 H 1.09004 * 109.47163 * 245.00280 * 3 2 1 33 33 H 1.08994 * 109.46719 * 30.00276 * 5 4 3 34 34 H 1.08996 * 109.47068 * 150.00171 * 5 4 3 35 35 H 0.97004 * 119.99826 * 180.02562 * 9 8 6 36 36 H 1.08993 * 109.47184 * 90.00341 * 18 17 16 37 37 H 1.09002 * 109.46868 * 210.00095 * 18 17 16 38 38 H 1.09000 * 109.47183 * 330.00159 * 18 17 16 39 39 H 1.07994 * 120.84981 * 0.02678 * 23 22 21 40 40 H 1.08001 * 120.35864 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.48247 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.70379 * 180.31554 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8442 3.3436 2.4803 7 1 3.3040 3.8369 1.6367 8 6 2.5184 4.0668 3.6082 9 7 1.9581 3.4662 4.6353 10 14 2.8728 5.8995 3.6772 11 1 1.7006 6.6502 3.1599 12 1 3.1361 6.3002 5.0827 13 1 4.0634 6.2052 2.8440 14 6 4.2497 0.8661 0.9824 15 8 5.0221 0.8887 1.9216 16 6 4.6888 0.3358 -0.3196 17 6 4.6190 -0.9526 -0.7862 18 6 4.0630 -2.1471 -0.0546 19 8 5.1391 -0.9407 -2.0157 20 7 5.5132 0.1513 -2.3669 21 6 5.3082 1.0609 -1.4486 22 6 5.6310 2.5068 -1.5235 23 6 6.7678 2.9463 -2.2082 24 6 7.0250 4.3056 -2.2485 25 6 6.1576 5.1775 -1.6155 26 7 5.0931 4.7330 -0.9761 27 6 4.8038 3.4491 -0.9159 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4888 1.6967 2.5459 34 1 3.0989 1.3603 3.2260 35 1 1.7285 3.9750 5.4286 36 1 2.9990 -2.2427 -0.2708 37 1 4.5826 -3.0478 -0.3819 38 1 4.2055 -2.0150 1.0179 39 1 7.4284 2.2431 -2.6933 40 1 7.8937 4.6816 -2.7685 41 1 6.3555 6.2388 -1.6446 42 1 3.9202 3.1238 -0.3871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294015973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:44 Heat of formation + Delta-G solvation = 68.652888 kcal Electronic energy + Delta-G solvation = -28368.153929 eV Core-core repulsion = 24509.756217 eV Total energy + Delta-G solvation = -3858.397713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.03354 -41.23814 -40.69957 -37.35179 -35.79559 -35.20622 -34.58229 -33.75966 -33.28727 -31.88701 -30.02348 -28.83484 -27.14819 -26.41141 -25.32704 -24.67391 -23.84738 -21.73770 -21.21302 -20.24385 -19.02643 -18.77718 -18.60536 -18.23399 -17.61587 -17.43543 -17.19390 -16.52459 -16.21270 -16.10533 -15.64128 -15.13959 -14.92048 -14.71685 -14.55027 -14.31688 -14.19960 -14.06675 -14.04329 -13.62614 -13.36886 -13.09876 -12.99878 -12.93804 -12.62560 -12.51241 -12.25491 -12.19159 -11.99568 -11.66632 -11.14091 -10.86549 -10.63968 -10.59342 -10.50303 -10.31502 -9.97240 -9.61975 -8.23340 -6.35155 -0.45761 0.13186 0.22077 0.91621 1.28213 1.33433 1.36344 1.38024 1.50673 1.74901 2.26874 2.40745 2.65493 2.66623 3.07820 3.17446 3.42368 3.55699 3.70732 3.80100 3.85616 3.97733 4.02031 4.11635 4.18592 4.21570 4.32815 4.54519 4.56708 4.62789 4.68528 4.74854 4.94263 4.97438 4.99133 5.01808 5.11890 5.20450 5.45807 5.55404 5.67138 5.74548 5.89581 6.03928 6.51218 6.72556 6.85507 6.99228 7.13595 7.36259 8.84170 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009138 B = 0.006257 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.238965 B = 4473.604798 C = 6549.568394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.193 4.193 3 C 0.134 3.866 4 N -0.577 5.577 5 C 0.266 3.734 6 C -0.539 4.539 7 H 0.053 0.947 8 C 0.018 3.982 9 N -0.923 5.923 10 Si 0.954 3.046 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.590 3.410 15 O -0.578 6.578 16 C -0.253 4.253 17 C 0.039 3.961 18 C -0.082 4.082 19 O 0.119 5.881 20 N -0.346 5.346 21 C 0.082 3.918 22 C -0.097 4.097 23 C -0.050 4.050 24 C -0.155 4.155 25 C 0.099 3.901 26 N -0.510 5.510 27 C 0.111 3.889 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.006 0.994 35 H 0.267 0.733 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.159 0.841 40 H 0.188 0.812 41 H 0.192 0.808 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -7.968 -17.342 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.211 4.211 3 C 0.012 3.988 4 N -0.306 5.306 5 C 0.145 3.855 6 C -0.578 4.578 7 H 0.071 0.929 8 C -0.182 4.182 9 N -0.563 5.563 10 Si 0.779 3.221 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.203 1.203 14 C 0.376 3.624 15 O -0.458 6.458 16 C -0.260 4.260 17 C -0.024 4.024 18 C -0.139 4.139 19 O 0.053 5.947 20 N -0.048 5.048 21 C -0.078 4.078 22 C -0.100 4.100 23 C -0.077 4.077 24 C -0.174 4.174 25 C -0.058 4.058 26 N -0.218 5.218 27 C -0.047 4.047 28 H 0.114 0.886 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.024 0.976 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.177 0.823 40 H 0.205 0.795 41 H 0.209 0.791 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.917 -7.304 -17.481 19.346 hybrid contribution 0.334 0.756 1.080 1.361 sum 4.251 -6.548 -16.400 18.164 Atomic orbital electron populations 1.24102 0.95236 1.03242 0.97065 1.23374 0.96927 0.97852 1.02986 1.20762 0.92364 0.97607 0.88107 1.48130 1.10660 1.58317 1.13493 1.18834 0.94545 0.92675 0.79408 1.21668 1.40453 0.94239 1.01413 0.92913 1.25647 0.94740 1.02859 0.94945 1.70023 1.42770 1.37746 1.05719 0.85607 0.78882 0.80314 0.77271 1.18908 1.20475 1.20327 1.17163 0.81955 0.77597 0.85665 1.90772 1.54184 1.58061 1.42804 1.21856 1.12046 0.95166 0.96979 1.24988 0.95696 0.96585 0.85148 1.20835 1.03038 0.91623 0.98392 1.84462 1.56928 1.25363 1.27983 1.73877 1.18434 0.91030 1.21455 1.22735 1.00905 0.94437 0.89684 1.18793 0.99004 0.88680 1.03520 1.21942 0.93926 0.97676 0.94146 1.22548 1.01962 0.92318 1.00570 1.23655 0.88673 1.02695 0.90762 1.67739 1.20739 1.16149 1.17202 1.22870 0.98572 0.88532 0.94696 0.88557 0.85551 0.85795 0.89977 0.90595 0.94962 0.97616 0.92410 0.86244 0.85383 0.89764 0.82339 0.79465 0.79105 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 14.32 67.79 0.97 -2.60 16 2 C -0.19 -5.05 9.85 25.65 0.25 -4.80 16 3 C 0.13 4.52 4.83 85.63 0.41 4.94 16 4 N -0.58 -24.87 1.91 -834.56 -1.60 -26.47 16 5 C 0.27 14.17 5.16 85.63 0.44 14.62 16 6 C -0.54 -31.30 9.39 25.60 0.24 -31.06 16 7 H 0.05 3.11 7.18 -2.91 -0.02 3.09 16 8 C 0.02 1.03 5.46 84.66 0.46 1.49 16 9 N -0.92 -55.54 13.29 21.45 0.28 -55.25 16 10 Si 0.95 46.48 29.54 68.60 2.03 48.51 16 11 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 14 C 0.59 25.91 6.32 86.62 0.55 26.46 16 15 O -0.58 -31.29 16.69 -4.10 -0.07 -31.36 16 16 C -0.25 -8.77 4.38 -18.61 -0.08 -8.85 16 17 C 0.04 1.00 7.51 25.45 0.19 1.19 16 18 C -0.08 -1.37 9.81 71.24 0.70 -0.67 16 19 O 0.12 2.99 11.05 76.96 0.85 3.84 16 20 N -0.35 -10.08 12.06 -45.00 -0.54 -10.62 16 21 C 0.08 2.75 6.83 44.50 0.30 3.05 16 22 C -0.10 -3.27 5.89 -19.95 -0.12 -3.39 16 23 C -0.05 -1.30 9.93 22.69 0.23 -1.08 16 24 C -0.15 -3.26 10.10 22.33 0.23 -3.04 16 25 C 0.10 2.61 11.17 84.70 0.95 3.55 16 26 N -0.51 -18.89 10.35 -194.92 -2.02 -20.91 16 27 C 0.11 4.32 10.50 84.97 0.89 5.21 16 28 H 0.10 2.24 7.84 -2.91 -0.02 2.22 16 29 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 30 H 0.12 2.74 5.28 -2.91 -0.02 2.73 16 31 H 0.08 2.90 7.72 -2.39 -0.02 2.88 16 32 H 0.08 2.44 6.30 -2.38 -0.02 2.43 16 33 H 0.03 1.73 8.07 -2.39 -0.02 1.71 16 34 H 0.01 0.35 7.42 -2.39 -0.02 0.33 16 35 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.12 1.47 6.07 -2.39 -0.01 1.45 16 37 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 39 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.19 3.52 8.06 -2.91 -0.02 3.49 16 42 H 0.14 5.96 4.73 -2.91 -0.01 5.95 16 Total: -1.00 -79.86 365.02 6.61 -73.25 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 1.06 Total: 13.99 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.61 Total: 5.02 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -3.87 Total: -113.25 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: 0.78 Total: -27.52 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -79.86 6.61 -73.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294015973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.900 kcal (2) G-P(sol) polarization free energy of solvation -79.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds