Wall clock time and date at job start Tue Mar 31 2020 14:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30402 * 125.97341 * 2 1 4 4 N 1.39915 * 109.03063 * 179.97438 * 3 2 1 5 5 C 1.40128 * 125.72431 * 179.73444 * 4 3 2 6 6 C 1.38858 * 120.06209 * 144.75384 * 5 4 3 7 7 C 1.38114 * 119.92472 * 179.72023 * 6 5 4 8 8 C 1.38281 * 120.06885 * 0.54992 * 7 6 5 9 9 C 1.38282 * 120.14092 * 359.72354 * 8 7 6 10 10 C 1.38116 * 120.06442 * 359.97438 * 9 8 7 11 11 C 1.34468 * 108.53943 * 0.02562 * 4 3 2 12 12 C 1.50702 * 126.34120 * 179.97438 * 11 4 3 13 13 C 1.38520 * 107.31670 * 359.97438 * 11 4 3 14 14 C 1.47048 * 126.46876 * 180.02562 * 13 11 4 15 15 O 1.21558 * 120.00104 * 5.18674 * 14 13 11 16 16 C 1.48556 * 119.99921 * 185.18804 * 14 13 11 17 17 O 1.21544 * 120.00327 * 83.77843 * 16 14 13 18 18 N 1.34784 * 119.99801 * 263.78033 * 16 14 13 19 19 C 1.46503 * 119.99971 * 354.90553 * 18 16 14 20 20 C 1.35909 * 119.99805 * 174.90427 * 18 16 14 21 21 H 1.07997 * 119.99855 * 2.24580 * 20 18 16 22 22 C 1.39777 * 119.99729 * 182.25250 * 20 18 16 23 23 N 1.30903 * 120.00281 * 7.66160 * 22 20 18 24 24 Si 1.86795 * 119.99985 * 187.66927 * 22 20 18 25 25 H 1.48503 * 109.47398 * 59.99645 * 24 22 20 26 26 H 1.48498 * 109.47480 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47221 * 299.99790 * 24 22 20 28 28 H 1.09008 * 109.46923 * 93.22118 * 1 2 3 29 29 H 1.09000 * 109.47562 * 213.21645 * 1 2 3 30 30 H 1.09000 * 109.47476 * 333.21978 * 1 2 3 31 31 H 1.07991 * 120.03517 * 359.97438 * 6 5 4 32 32 H 1.08001 * 119.96483 * 180.29575 * 7 6 5 33 33 H 1.08005 * 119.93236 * 179.74827 * 8 7 6 34 34 H 1.07998 * 119.96547 * 180.02562 * 9 8 7 35 35 H 1.07998 * 120.03046 * 180.02562 * 10 9 8 36 36 H 1.09005 * 109.47079 * 90.02448 * 12 11 4 37 37 H 1.09001 * 109.46914 * 210.01864 * 12 11 4 38 38 H 1.08996 * 109.47013 * 330.02518 * 12 11 4 39 39 H 1.09007 * 109.46847 * 354.07581 * 19 18 16 40 40 H 1.08989 * 109.47194 * 114.07937 * 19 18 16 41 41 H 1.08997 * 109.46950 * 234.08198 * 19 18 16 42 42 H 0.96998 * 119.99938 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0553 0.0000 4 7 3.6114 0.6476 0.0006 5 6 4.7256 1.4974 -0.0045 6 6 5.8746 1.1421 0.6896 7 6 6.9732 1.9791 0.6779 8 6 6.9256 3.1750 -0.0146 9 6 5.7809 3.5343 -0.7021 10 6 4.6812 2.6987 -0.6994 11 6 3.6489 -0.6966 0.0004 12 6 4.8872 -1.5554 0.0003 13 6 2.3385 -1.1456 0.0003 14 6 1.8949 -2.5475 0.0006 15 8 2.7112 -3.4433 0.0961 16 6 0.4493 -2.8693 -0.1160 17 8 -0.0761 -2.9184 -1.2109 18 7 -0.2797 -3.1067 0.9926 19 6 0.3744 -3.1578 2.3025 20 6 -1.6216 -3.2986 0.8951 21 1 -2.0984 -3.2970 -0.0739 22 6 -2.3847 -3.4979 2.0492 23 7 -1.8373 -3.3515 3.2292 24 14 -4.1855 -3.9735 1.9076 25 1 -4.3017 -5.2595 1.1741 26 1 -4.7659 -4.1249 3.2660 27 1 -4.9206 -2.9148 1.1700 28 1 -0.3633 -0.0578 -1.0261 29 1 -0.3634 -0.8597 0.5629 30 1 -0.3634 0.9174 0.4630 31 1 5.9106 0.2104 1.2345 32 1 7.8688 1.7011 1.2136 33 1 7.7846 3.8298 -0.0189 34 1 5.7470 4.4688 -1.2424 35 1 3.7875 2.9796 -1.2368 36 1 5.1855 -1.7630 1.0280 37 1 4.6786 -2.4936 -0.5140 38 1 5.6931 -1.0310 -0.5130 39 1 1.4544 -3.0874 2.1722 40 1 0.0272 -2.3256 2.9147 41 1 0.1285 -4.0986 2.7949 42 1 -2.3667 -3.4902 4.0300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299599923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:09 Heat of formation + Delta-G solvation = 40.740952 kcal Electronic energy + Delta-G solvation = -27695.531799 eV Core-core repulsion = 23835.923734 eV Total energy + Delta-G solvation = -3859.608065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.07008 -41.12612 -39.95101 -39.05033 -36.87842 -35.53909 -33.72707 -33.47835 -31.94997 -31.47716 -29.55222 -28.54327 -28.44354 -27.09571 -25.30993 -23.84275 -23.50897 -22.01741 -20.79459 -20.22466 -19.21003 -18.81818 -17.93654 -17.42012 -17.09814 -16.91783 -16.77225 -16.19173 -15.76947 -15.66321 -15.26614 -15.10447 -14.90331 -14.61374 -14.60155 -14.43624 -14.12284 -13.92541 -13.76214 -13.66578 -13.39764 -13.33722 -13.11528 -12.90259 -12.71262 -12.60137 -12.37140 -12.31539 -12.10283 -12.04580 -11.73861 -11.11642 -11.01239 -10.18770 -10.13652 -10.05020 -10.03748 -9.36720 -8.35159 -5.94728 -0.42547 0.22170 0.29690 0.85862 1.05699 1.34480 1.44566 1.54457 1.73528 1.80777 2.20108 2.55103 2.69167 3.05380 3.25090 3.29774 3.58285 3.64447 3.85170 3.86853 3.94495 4.18362 4.23368 4.38196 4.39418 4.41745 4.45772 4.53787 4.58591 4.61813 4.77697 4.85213 4.96569 5.00096 5.04079 5.19544 5.31062 5.32762 5.38398 5.40585 5.46907 5.68581 5.84219 6.01466 6.16151 6.34231 6.36481 7.01522 7.26250 7.79457 8.57676 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023903 B = 0.003124 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.112432 B = 8961.430829 C = 9278.042202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.136 3.864 3 N -0.311 5.311 4 N -0.308 5.308 5 C 0.107 3.893 6 C -0.133 4.133 7 C -0.093 4.093 8 C -0.109 4.109 9 C -0.101 4.101 10 C -0.124 4.124 11 C 0.175 3.825 12 C -0.100 4.100 13 C -0.339 4.339 14 C 0.449 3.551 15 O -0.472 6.472 16 C 0.394 3.606 17 O -0.615 6.615 18 N -0.419 5.419 19 C 0.124 3.876 20 C -0.349 4.349 21 H 0.089 0.911 22 C 0.007 3.993 23 N -0.880 5.880 24 Si 0.996 3.004 25 H -0.274 1.274 26 H -0.267 1.267 27 H -0.267 1.267 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.143 0.857 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.619 13.203 -0.229 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.032 4.032 3 N -0.130 5.130 4 N -0.079 5.079 5 C 0.018 3.982 6 C -0.153 4.153 7 C -0.112 4.112 8 C -0.127 4.127 9 C -0.119 4.119 10 C -0.143 4.143 11 C 0.043 3.957 12 C -0.158 4.158 13 C -0.351 4.351 14 C 0.325 3.675 15 O -0.349 6.349 16 C 0.182 3.818 17 O -0.505 6.505 18 N -0.136 5.136 19 C -0.019 4.019 20 C -0.476 4.476 21 H 0.107 0.893 22 C -0.197 4.197 23 N -0.518 5.518 24 Si 0.819 3.181 25 H -0.199 1.199 26 H -0.192 1.192 27 H -0.191 1.191 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.161 0.839 32 H 0.185 0.815 33 H 0.182 0.818 34 H 0.174 0.826 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.824 14.032 -0.428 23.482 hybrid contribution -1.568 -1.292 -0.087 2.034 sum 17.256 12.740 -0.515 21.455 Atomic orbital electron populations 1.20458 0.85233 1.04558 1.03926 1.22799 0.97592 0.89379 0.93459 1.77164 0.85867 1.22027 1.27990 1.45770 1.04929 1.03630 1.53613 1.18002 0.84966 0.92716 1.02543 1.21415 0.92237 1.02548 0.99053 1.21461 0.97955 0.93376 0.98378 1.21765 0.98679 0.96834 0.95376 1.21416 0.91832 0.99704 0.98977 1.21137 1.00567 0.93468 0.99157 1.22316 0.97135 0.84267 0.91947 1.21016 0.90523 0.98324 1.05894 1.20418 0.93178 0.94459 1.27077 1.21166 0.89013 0.87671 0.69610 1.90490 1.55752 1.49773 1.38849 1.20053 0.88478 0.87877 0.85395 1.90597 1.72089 1.60685 1.27135 1.43597 1.07494 1.56584 1.05922 1.21727 0.92283 1.03986 0.83859 1.19766 0.82417 1.50138 0.95291 0.89279 1.26217 1.04613 0.95134 0.93733 1.69994 1.38575 1.44820 0.98382 0.84954 0.76216 0.78991 0.77977 1.19884 1.19159 1.19133 0.89965 0.90346 0.88833 0.83913 0.81486 0.81755 0.82590 0.86326 0.86624 0.89009 0.87552 0.94642 0.91082 0.91638 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.36 9.40 71.24 0.67 -2.69 16 2 C 0.14 5.49 7.26 43.59 0.32 5.81 16 3 N -0.31 -11.57 12.24 -46.53 -0.57 -12.14 16 4 N -0.31 -9.79 3.70 -174.22 -0.64 -10.44 16 5 C 0.11 2.61 6.25 38.11 0.24 2.85 16 6 C -0.13 -2.28 8.25 22.39 0.18 -2.10 16 7 C -0.09 -1.00 10.04 22.25 0.22 -0.78 16 8 C -0.11 -1.04 10.04 22.29 0.22 -0.82 16 9 C -0.10 -1.37 10.04 22.25 0.22 -1.14 16 10 C -0.12 -2.65 9.75 22.39 0.22 -2.44 16 11 C 0.17 5.74 6.85 42.22 0.29 6.03 16 12 C -0.10 -2.35 8.01 71.24 0.57 -1.78 16 13 C -0.34 -13.90 6.11 -20.08 -0.12 -14.02 16 14 C 0.45 20.96 5.00 27.34 0.14 21.10 16 15 O -0.47 -21.76 15.38 -3.90 -0.06 -21.82 16 16 C 0.39 21.09 4.68 87.00 0.41 21.50 16 17 O -0.62 -36.60 16.66 -3.86 -0.06 -36.67 16 18 N -0.42 -22.46 2.06 -661.54 -1.37 -23.83 16 19 C 0.12 6.00 8.75 127.77 1.12 7.12 16 20 C -0.35 -19.40 9.36 84.43 0.79 -18.61 16 21 H 0.09 5.23 7.16 -2.91 -0.02 5.21 16 22 C 0.01 0.37 5.42 85.20 0.46 0.83 16 23 N -0.88 -44.22 9.50 21.80 0.21 -44.01 16 24 Si 1.00 40.82 29.56 68.60 2.03 42.85 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 27 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 28 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 29 H 0.08 3.65 5.11 -2.39 -0.01 3.64 16 30 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.14 2.15 6.10 -2.92 -0.02 2.13 16 32 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.16 0.47 8.06 -2.91 -0.02 0.44 16 34 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.12 2.19 7.73 -2.38 -0.02 2.17 16 37 H 0.09 2.49 6.64 -2.39 -0.02 2.48 16 38 H 0.11 1.84 6.87 -2.39 -0.02 1.83 16 39 H 0.04 1.58 6.06 -2.38 -0.01 1.56 16 40 H 0.07 3.47 7.07 -2.39 -0.02 3.45 16 41 H 0.07 3.27 7.03 -2.39 -0.02 3.25 16 42 H 0.28 13.05 8.30 -92.71 -0.77 12.28 16 Total: -1.00 -72.13 352.21 6.55 -65.58 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 1.07 Total: 19.61 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 5.95 Total: 20.87 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.37 Total: -90.42 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -0.12 Total: -58.49 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -72.13 6.55 -65.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299599923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.318 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds