Wall clock time and date at job start Tue Mar 31 2020 16:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47143 * 2 1 4 4 C 1.38220 * 120.41702 * 264.99738 * 3 2 1 5 5 N 1.31860 * 120.76174 * 179.97438 * 4 3 2 6 6 C 1.31880 * 121.72574 * 359.97438 * 5 4 3 7 7 C 1.38185 * 120.76785 * 359.97438 * 6 5 4 8 8 C 1.38625 * 120.41524 * 84.95150 * 3 2 1 9 9 C 1.50699 * 120.79555 * 0.02769 * 8 3 2 10 10 N 1.46499 * 109.47268 * 79.99453 * 9 8 3 11 11 S 1.65603 * 119.99736 * 165.00179 * 10 9 8 12 12 O 1.42103 * 106.39932 * 178.54235 * 11 10 9 13 13 O 1.42102 * 106.39958 * 311.46174 * 11 10 9 14 14 N 1.65593 * 107.21712 * 65.00046 * 11 10 9 15 15 C 1.46507 * 120.00056 * 89.99973 * 14 11 10 16 16 C 1.46504 * 120.00315 * 269.99699 * 14 11 10 17 17 H 1.08994 * 109.46559 * 0.02562 * 16 14 11 18 18 C 1.52995 * 109.47129 * 240.00382 * 16 14 11 19 19 C 1.50701 * 109.46853 * 120.00089 * 16 14 11 20 20 H 1.07996 * 120.00570 * 0.02562 * 19 16 14 21 21 C 1.37882 * 119.99901 * 180.02562 * 19 16 14 22 22 N 1.31523 * 119.99735 * 359.97438 * 21 19 16 23 23 Si 1.86793 * 120.00000 * 180.02562 * 21 19 16 24 24 H 1.48493 * 109.47397 * 90.00137 * 23 21 19 25 25 H 1.48499 * 109.47026 * 210.00007 * 23 21 19 26 26 H 1.48502 * 109.47422 * 329.99660 * 23 21 19 27 27 H 1.08999 * 109.46615 * 60.00469 * 1 2 3 28 28 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46959 * 300.00275 * 1 2 3 30 30 H 1.09002 * 109.47406 * 239.99540 * 2 1 3 31 31 H 1.09005 * 109.47039 * 119.99672 * 2 1 3 32 32 H 1.08001 * 119.62033 * 359.95681 * 4 3 2 33 33 H 1.08003 * 119.62232 * 180.02562 * 6 5 4 34 34 H 1.07995 * 120.42231 * 179.74997 * 7 6 5 35 35 H 1.09000 * 109.46790 * 200.00035 * 9 8 3 36 36 H 1.09002 * 109.46712 * 319.99411 * 9 8 3 37 37 H 0.97001 * 119.99911 * 345.00421 * 10 9 8 38 38 H 1.09001 * 109.46744 * 89.99840 * 15 14 11 39 39 H 1.08998 * 109.47039 * 209.99895 * 15 14 11 40 40 H 1.08998 * 109.46840 * 330.00114 * 15 14 11 41 41 H 1.09002 * 109.47198 * 179.97438 * 18 16 14 42 42 H 1.09004 * 109.47359 * 299.99418 * 18 16 14 43 43 H 1.08999 * 109.47500 * 59.99727 * 18 16 14 44 44 H 0.96994 * 119.99877 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3636 2.0460 -1.1874 5 7 2.8034 3.2891 -1.1954 6 6 2.9439 3.9821 -0.0822 7 6 2.6315 3.4234 1.1425 8 6 2.1671 2.1176 1.1908 9 6 1.8162 1.4719 2.5065 10 7 2.9197 0.6098 2.9371 11 16 2.9849 0.0671 4.5003 12 8 4.1365 -0.7605 4.5900 13 8 2.7777 1.2031 5.3284 14 7 1.6780 -0.9236 4.7301 15 6 1.7896 -2.3586 4.4569 16 6 0.4102 -0.3651 5.2066 17 1 0.5187 0.7095 5.3527 18 6 0.0290 -1.0247 6.5334 19 6 -0.6686 -0.6267 4.1874 20 1 -0.4335 -1.1563 3.2760 21 6 -1.9558 -0.1899 4.4183 22 7 -2.2422 0.4547 5.5284 23 14 -3.2931 -0.5147 3.1553 24 1 -3.9468 -1.8151 3.4497 25 1 -4.3037 0.5718 3.2139 26 1 -2.6920 -0.5588 1.7980 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.2614 1.5100 -2.1195 33 1 3.3066 4.9983 -0.1282 34 1 2.7526 3.9947 2.0510 35 1 1.6448 2.2444 3.2560 36 1 0.9127 0.8737 2.3880 37 1 3.6121 0.3570 2.3066 38 1 2.1110 -2.8766 5.3606 39 1 0.8203 -2.7450 4.1419 40 1 2.5206 -2.5219 3.6651 41 1 -0.9140 -0.6089 6.8882 42 1 -0.0796 -2.0994 6.3870 43 1 0.8093 -0.8356 7.2706 44 1 -3.1478 0.7617 5.6911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330404876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:16 Heat of formation + Delta-G solvation = -51.121283 kcal Electronic energy + Delta-G solvation = -27554.372685 eV Core-core repulsion = 23826.225126 eV Total energy + Delta-G solvation = -3728.147559 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.43719 -36.78958 -36.22196 -35.92979 -35.30302 -34.02111 -32.67236 -31.79055 -29.63658 -29.13718 -26.31176 -25.56139 -25.25241 -24.18158 -22.35812 -21.05154 -20.81672 -18.96915 -17.39439 -17.10083 -16.78890 -16.50546 -16.32148 -15.51017 -15.29850 -14.97800 -14.37796 -14.06964 -13.91173 -13.64750 -13.57240 -13.33989 -13.00936 -12.76446 -12.61455 -12.41206 -12.05380 -11.98554 -11.83482 -11.59932 -11.51774 -11.45338 -11.27151 -11.16294 -11.02963 -10.95758 -10.84348 -10.48589 -10.28137 -10.13106 -9.61163 -9.48006 -9.41535 -9.12477 -8.93899 -8.56358 -8.03214 -6.17438 -4.26693 0.98483 1.10365 1.38099 3.17660 3.25550 3.26971 3.45607 3.80385 4.10257 4.27219 4.40656 4.57861 4.71553 4.86229 4.94327 5.01723 5.13039 5.33222 5.40854 5.44535 5.54672 5.57356 5.65553 5.74843 5.86311 5.98621 6.03092 6.12391 6.13352 6.22553 6.30712 6.45074 6.47055 6.60735 6.69883 6.82420 6.83508 7.06541 7.14731 7.45576 7.55073 7.70837 7.93067 7.97824 8.18157 8.76924 9.40199 10.87322 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.006063 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.962306 B = 4617.100836 C = 6155.798332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.115 4.115 4 C 0.094 3.906 5 N -0.485 5.485 6 C 0.086 3.914 7 C -0.153 4.153 8 C -0.045 4.045 9 C 0.154 3.846 10 N -1.127 6.127 11 S 2.782 3.218 12 O -0.998 6.998 13 O -0.980 6.980 14 N -0.990 5.990 15 C 0.108 3.892 16 C 0.266 3.734 17 H 0.059 0.941 18 C -0.145 4.145 19 C -0.527 4.527 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.884 5.884 23 Si 0.889 3.111 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.270 1.270 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.408 0.592 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.032 0.968 43 H 0.012 0.988 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 0.482 -9.715 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.063 4.063 5 N -0.193 5.193 6 C -0.070 4.070 7 C -0.173 4.173 8 C -0.054 4.054 9 C 0.029 3.971 10 N -0.885 5.885 11 S 2.791 3.209 12 O -0.982 6.982 13 O -0.964 6.964 14 N -0.833 5.833 15 C -0.039 4.039 16 C 0.163 3.837 17 H 0.076 0.924 18 C -0.204 4.204 19 C -0.567 4.567 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.522 5.522 23 Si 0.717 3.283 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.194 1.194 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.156 0.844 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.240 0.760 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.051 0.949 43 H 0.031 0.969 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.191 1.261 -9.609 12.068 hybrid contribution -1.097 -0.716 -0.396 1.369 sum 6.093 0.545 -10.005 11.727 Atomic orbital electron populations 1.21786 0.93801 1.02508 1.02536 1.20570 0.96939 0.91433 1.03405 1.20907 0.99310 0.98027 0.93466 1.22622 0.95491 0.90902 0.97267 1.67637 1.12615 1.07718 1.31351 1.22692 0.96906 0.99709 0.87711 1.22192 0.99591 0.95618 0.99945 1.20294 0.96051 0.93981 0.95087 1.20294 0.90110 0.94227 0.92471 1.56103 1.35239 1.64739 1.32401 1.01834 0.72753 0.73329 0.72988 1.93555 1.49357 1.68971 1.86295 1.93581 1.86152 1.51184 1.65436 1.57706 1.28777 1.16814 1.79955 1.21174 1.02330 0.81165 0.99189 1.18759 0.78454 0.94144 0.92319 0.92369 1.22049 1.01852 0.99474 0.97074 1.21350 0.93197 1.37656 1.04455 0.91722 1.24906 0.98413 0.94824 0.95429 1.69877 1.20439 1.37532 1.24313 0.86647 0.81809 0.77972 0.81892 1.20720 1.21268 1.19440 0.93067 0.91978 0.91283 0.91006 0.89833 0.83021 0.82868 0.84409 0.89326 0.88099 0.75965 0.93921 0.90152 0.93209 0.88943 0.94864 0.96930 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.77 37.16 0.36 -1.54 16 2 C -0.09 -0.98 5.44 -27.88 -0.15 -1.13 16 3 C -0.11 -1.42 5.15 -104.48 -0.54 -1.96 16 4 C 0.09 1.13 10.84 -17.55 -0.19 0.94 16 5 N -0.48 -6.32 10.36 -13.25 -0.14 -6.46 16 6 C 0.09 1.02 11.18 -17.55 -0.20 0.82 16 7 C -0.15 -1.88 9.78 -39.44 -0.39 -2.27 16 8 C -0.04 -0.60 5.31 -104.32 -0.55 -1.15 16 9 C 0.15 2.34 5.58 -5.19 -0.03 2.31 16 10 N -1.13 -16.75 5.48 -11.66 -0.06 -16.82 16 11 S 2.78 51.53 6.09 -107.50 -0.66 50.87 16 12 O -1.00 -19.68 17.21 -57.17 -0.98 -20.67 16 13 O -0.98 -21.32 16.17 -57.17 -0.92 -22.24 16 14 N -0.99 -19.04 3.12 -115.85 -0.36 -19.40 16 15 C 0.11 1.79 9.28 59.85 0.56 2.35 16 16 C 0.27 6.01 2.62 -69.08 -0.18 5.83 16 17 H 0.06 1.46 6.91 -51.93 -0.36 1.10 16 18 C -0.14 -3.29 8.97 37.15 0.33 -2.96 16 19 C -0.53 -12.22 7.66 -34.44 -0.26 -12.48 16 20 H 0.06 1.43 7.33 -52.49 -0.38 1.05 16 21 C 0.07 1.65 5.30 -17.81 -0.09 1.55 16 22 N -0.88 -22.96 11.32 55.43 0.63 -22.33 16 23 Si 0.89 19.03 29.54 -169.99 -5.02 14.01 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.04 6.80 -51.93 -0.35 0.68 16 30 H 0.07 0.67 8.06 -51.93 -0.42 0.26 16 31 H 0.08 1.00 6.78 -51.93 -0.35 0.65 16 32 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.09 1.43 7.65 -51.93 -0.40 1.03 16 36 H 0.10 1.65 5.72 -51.93 -0.30 1.35 16 37 H 0.41 5.18 8.64 -34.48 -0.30 4.88 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.34 7.02 -51.93 -0.36 0.98 16 40 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 41 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 42 H 0.03 0.70 7.67 -51.93 -0.40 0.31 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -29.58 369.01 -9.73 -39.30 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.44 Total: 7.86 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.33 Total: -9.68 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: 0.06 Total: -65.01 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.91 Total: -42.91 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Atomic # 16 Polarization: 51.53 SS G_CDS: -0.66 Total: 50.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.58 -9.73 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330404876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.817 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds