Wall clock time and date at job start Tue Mar 31 2020 16:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47143 * 2 1 4 4 C 1.38220 * 120.41702 * 264.99738 * 3 2 1 5 5 N 1.31860 * 120.76174 * 179.97438 * 4 3 2 6 6 C 1.31880 * 121.72574 * 359.97438 * 5 4 3 7 7 C 1.38185 * 120.76785 * 359.97438 * 6 5 4 8 8 C 1.38625 * 120.41524 * 84.95150 * 3 2 1 9 9 C 1.50699 * 120.79555 * 0.02769 * 8 3 2 10 10 N 1.46499 * 109.47268 * 79.99453 * 9 8 3 11 11 S 1.65603 * 119.99736 * 165.00179 * 10 9 8 12 12 O 1.42103 * 106.39932 * 178.54235 * 11 10 9 13 13 O 1.42102 * 106.39958 * 311.46174 * 11 10 9 14 14 N 1.65593 * 107.21712 * 65.00046 * 11 10 9 15 15 C 1.46507 * 120.00056 * 89.99973 * 14 11 10 16 16 C 1.46504 * 120.00315 * 269.99699 * 14 11 10 17 17 H 1.08994 * 109.46559 * 0.02562 * 16 14 11 18 18 C 1.52995 * 109.47129 * 240.00382 * 16 14 11 19 19 C 1.50701 * 109.46853 * 120.00089 * 16 14 11 20 20 H 1.07996 * 120.00570 * 0.02562 * 19 16 14 21 21 C 1.37882 * 119.99901 * 180.02562 * 19 16 14 22 22 N 1.31523 * 119.99735 * 359.97438 * 21 19 16 23 23 Si 1.86793 * 120.00000 * 180.02562 * 21 19 16 24 24 H 1.48493 * 109.47397 * 90.00137 * 23 21 19 25 25 H 1.48499 * 109.47026 * 210.00007 * 23 21 19 26 26 H 1.48502 * 109.47422 * 329.99660 * 23 21 19 27 27 H 1.08999 * 109.46615 * 60.00469 * 1 2 3 28 28 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46959 * 300.00275 * 1 2 3 30 30 H 1.09002 * 109.47406 * 239.99540 * 2 1 3 31 31 H 1.09005 * 109.47039 * 119.99672 * 2 1 3 32 32 H 1.08001 * 119.62033 * 359.95681 * 4 3 2 33 33 H 1.08003 * 119.62232 * 180.02562 * 6 5 4 34 34 H 1.07995 * 120.42231 * 179.74997 * 7 6 5 35 35 H 1.09000 * 109.46790 * 200.00035 * 9 8 3 36 36 H 1.09002 * 109.46712 * 319.99411 * 9 8 3 37 37 H 0.97001 * 119.99911 * 345.00421 * 10 9 8 38 38 H 1.09001 * 109.46744 * 89.99840 * 15 14 11 39 39 H 1.08998 * 109.47039 * 209.99895 * 15 14 11 40 40 H 1.08998 * 109.46840 * 330.00114 * 15 14 11 41 41 H 1.09002 * 109.47198 * 179.97438 * 18 16 14 42 42 H 1.09004 * 109.47359 * 299.99418 * 18 16 14 43 43 H 1.08999 * 109.47500 * 59.99727 * 18 16 14 44 44 H 0.96994 * 119.99877 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3636 2.0460 -1.1874 5 7 2.8034 3.2891 -1.1954 6 6 2.9439 3.9821 -0.0822 7 6 2.6315 3.4234 1.1425 8 6 2.1671 2.1176 1.1908 9 6 1.8162 1.4719 2.5065 10 7 2.9197 0.6098 2.9371 11 16 2.9849 0.0671 4.5003 12 8 4.1365 -0.7605 4.5900 13 8 2.7777 1.2031 5.3284 14 7 1.6780 -0.9236 4.7301 15 6 1.7896 -2.3586 4.4569 16 6 0.4102 -0.3651 5.2066 17 1 0.5187 0.7095 5.3527 18 6 0.0290 -1.0247 6.5334 19 6 -0.6686 -0.6267 4.1874 20 1 -0.4335 -1.1563 3.2760 21 6 -1.9558 -0.1899 4.4183 22 7 -2.2422 0.4547 5.5284 23 14 -3.2931 -0.5147 3.1553 24 1 -3.9468 -1.8151 3.4497 25 1 -4.3037 0.5718 3.2139 26 1 -2.6920 -0.5588 1.7980 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.2614 1.5100 -2.1195 33 1 3.3066 4.9983 -0.1282 34 1 2.7526 3.9947 2.0510 35 1 1.6448 2.2444 3.2560 36 1 0.9127 0.8737 2.3880 37 1 3.6121 0.3570 2.3066 38 1 2.1110 -2.8766 5.3606 39 1 0.8203 -2.7450 4.1419 40 1 2.5206 -2.5219 3.6651 41 1 -0.9140 -0.6089 6.8882 42 1 -0.0796 -2.0994 6.3870 43 1 0.8093 -0.8356 7.2706 44 1 -3.1478 0.7617 5.6911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330404876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:15 Heat of formation + Delta-G solvation = -70.929215 kcal Electronic energy + Delta-G solvation = -27555.231622 eV Core-core repulsion = 23826.225126 eV Total energy + Delta-G solvation = -3729.006496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39349 -38.37891 -37.85872 -37.08467 -36.91470 -35.04695 -34.46179 -32.84124 -30.88560 -30.58210 -27.49035 -27.18583 -26.96685 -25.12739 -23.37279 -22.56515 -22.00753 -20.43053 -18.81505 -18.55698 -18.32692 -17.73197 -17.66224 -16.92510 -16.54722 -16.22477 -15.81125 -15.20039 -15.08014 -14.97666 -14.82504 -14.57454 -14.42676 -14.14183 -13.85611 -13.70198 -13.41356 -13.38653 -13.20524 -13.16175 -12.99041 -12.94744 -12.88225 -12.71535 -12.59379 -12.20811 -12.13780 -12.07081 -11.84279 -11.81262 -11.15633 -10.63083 -10.54608 -10.45374 -10.35412 -9.85887 -9.64245 -8.04633 -6.18208 -0.39053 0.18340 0.25391 1.47306 1.51144 1.57883 2.02812 2.48578 2.60165 2.86309 3.25086 3.36342 3.53229 3.64612 3.78205 3.94768 4.00795 4.12614 4.34396 4.42337 4.45918 4.51372 4.61706 4.74752 4.77196 4.82984 4.85242 4.96675 4.97995 5.00981 5.06534 5.09809 5.20304 5.26766 5.30253 5.44444 5.48091 5.65005 5.71970 5.77489 5.86699 6.05657 6.16886 6.33559 6.91676 7.00832 7.51542 8.99936 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.006063 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.962306 B = 4617.100836 C = 6155.798332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.116 4.116 4 C 0.094 3.906 5 N -0.501 5.501 6 C 0.086 3.914 7 C -0.160 4.160 8 C -0.059 4.059 9 C 0.160 3.840 10 N -1.109 6.109 11 S 2.799 3.201 12 O -1.006 7.006 13 O -1.015 7.015 14 N -0.994 5.994 15 C 0.101 3.899 16 C 0.272 3.728 17 H 0.027 0.973 18 C -0.140 4.140 19 C -0.518 4.518 20 H 0.076 0.924 21 C 0.022 3.978 22 N -0.918 5.918 23 Si 0.942 3.058 24 H -0.282 1.282 25 H -0.297 1.297 26 H -0.251 1.251 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.178 0.822 33 H 0.180 0.820 34 H 0.146 0.854 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.421 0.579 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.015 0.985 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.366 -0.319 -12.155 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C -0.118 4.118 4 C -0.063 4.063 5 N -0.209 5.209 6 C -0.070 4.070 7 C -0.181 4.181 8 C -0.068 4.068 9 C 0.035 3.965 10 N -0.871 5.871 11 S 2.808 3.192 12 O -0.991 6.991 13 O -0.999 6.999 14 N -0.836 5.836 15 C -0.045 4.045 16 C 0.168 3.832 17 H 0.045 0.955 18 C -0.200 4.200 19 C -0.557 4.557 20 H 0.094 0.906 21 C -0.178 4.178 22 N -0.558 5.558 23 Si 0.769 3.231 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.175 1.175 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.195 0.805 33 H 0.197 0.803 34 H 0.164 0.836 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.256 0.744 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.970 0.431 -12.066 14.467 hybrid contribution -1.269 -0.447 0.342 1.388 sum 6.701 -0.016 -11.724 13.504 Atomic orbital electron populations 1.21765 0.94807 1.02368 1.01644 1.20575 0.95948 0.91069 1.04410 1.20998 0.99202 0.98437 0.93193 1.23023 0.94569 0.90717 0.98011 1.67708 1.13091 1.08305 1.31835 1.23099 0.96136 1.00710 0.87075 1.22359 0.99528 0.95380 1.00793 1.20220 0.97432 0.94691 0.94468 1.20152 0.89562 0.93582 0.93231 1.55679 1.35648 1.64323 1.31417 1.01164 0.72196 0.72580 0.73286 1.93536 1.49586 1.69157 1.86773 1.93538 1.86523 1.52635 1.67188 1.57576 1.27481 1.18173 1.80373 1.21386 1.03200 0.79432 1.00475 1.18440 0.79784 0.92599 0.92389 0.95474 1.21956 1.00785 0.99913 0.97342 1.21566 0.93055 1.36489 1.04582 0.90567 1.25576 1.00468 0.94925 0.96789 1.70017 1.20554 1.39087 1.26103 0.85790 0.79293 0.77116 0.80925 1.20841 1.22337 1.17454 0.92022 0.91701 0.94073 0.88277 0.90538 0.80537 0.80315 0.83606 0.90987 0.89302 0.74360 0.93287 0.90157 0.90607 0.91258 0.93786 0.96557 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.77 71.98 0.70 -2.79 16 2 C -0.08 -1.68 5.44 29.85 0.16 -1.51 16 3 C -0.12 -2.62 5.15 -19.78 -0.10 -2.72 16 4 C 0.09 1.99 10.84 84.68 0.92 2.91 16 5 N -0.50 -11.85 10.36 -195.84 -2.03 -13.88 16 6 C 0.09 1.85 11.18 84.67 0.95 2.79 16 7 C -0.16 -3.74 9.78 22.36 0.22 -3.53 16 8 C -0.06 -1.50 5.31 -19.67 -0.10 -1.61 16 9 C 0.16 4.83 5.58 85.63 0.48 5.31 16 10 N -1.11 -32.08 5.48 -190.79 -1.05 -33.12 16 11 S 2.80 102.53 6.09 -56.49 -0.34 102.19 16 12 O -1.01 -38.37 17.21 -128.00 -2.20 -40.58 16 13 O -1.02 -44.96 16.17 -128.00 -2.07 -47.03 16 14 N -0.99 -37.67 3.12 -520.44 -1.62 -39.29 16 15 C 0.10 3.16 9.28 127.77 1.19 4.35 16 16 C 0.27 12.42 2.62 44.24 0.12 12.54 16 17 H 0.03 1.42 6.91 -2.39 -0.02 1.41 16 18 C -0.14 -6.45 8.97 71.98 0.65 -5.81 16 19 C -0.52 -23.88 7.66 25.60 0.20 -23.68 16 20 H 0.08 3.28 7.33 -2.91 -0.02 3.26 16 21 C 0.02 1.09 5.30 84.65 0.45 1.54 16 22 N -0.92 -48.83 11.32 21.45 0.24 -48.58 16 23 Si 0.94 38.82 29.54 68.60 2.03 40.85 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.30 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.19 6.80 -2.39 -0.02 1.17 16 30 H 0.10 1.49 8.06 -2.39 -0.02 1.47 16 31 H 0.08 1.67 6.78 -2.38 -0.02 1.65 16 32 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 33 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.07 2.40 7.65 -2.39 -0.02 2.38 16 36 H 0.09 2.92 5.72 -2.39 -0.01 2.90 16 37 H 0.42 10.01 8.64 -96.74 -0.84 9.18 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 2.53 7.02 -2.39 -0.02 2.51 16 40 H 0.08 1.98 7.79 -2.39 -0.02 1.96 16 41 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 42 H 0.04 1.87 7.67 -2.39 -0.02 1.85 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -62.98 369.01 -1.06 -64.04 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.18 Total: 27.62 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 5.81 Total: -12.21 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -4.46 Total: -134.88 kcal Atomic # 8 Polarization: -83.33 SS G_CDS: -4.27 Total: -87.61 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Atomic # 16 Polarization: 102.53 SS G_CDS: -0.34 Total: 102.19 kcal Total: -62.98 -1.06 -64.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330404876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.891 kcal (2) G-P(sol) polarization free energy of solvation -62.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds