Wall clock time and date at job start Tue Mar 31 2020 15:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30828 * 125.90171 * 2 1 4 4 N 1.40089 * 108.20899 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.04116 * 179.97438 * 4 3 2 6 6 C 1.34952 * 107.91950 * 359.75683 * 4 3 2 7 7 C 1.35315 * 107.74947 * 0.38864 * 6 4 3 8 8 C 1.50700 * 126.04398 * 179.87604 * 7 6 4 9 9 H 1.08998 * 109.47027 * 144.69004 * 8 7 6 10 10 C 1.53000 * 109.46698 * 264.69190 * 8 7 6 11 11 N 1.46495 * 109.47033 * 24.68803 * 8 7 6 12 12 S 1.65601 * 120.00247 * 145.00374 * 11 8 7 13 13 O 1.42102 * 104.27176 * 308.92718 * 12 11 8 14 14 O 1.42096 * 104.27737 * 181.07292 * 12 11 8 15 15 C 1.81397 * 104.44810 * 64.99874 * 12 11 8 16 16 C 1.53003 * 109.47007 * 174.34873 * 15 12 11 17 17 C 1.50698 * 115.54935 * 295.21555 * 16 15 12 18 18 H 1.08001 * 119.99726 * 95.16712 * 17 16 15 19 19 C 1.37871 * 120.00139 * 274.88884 * 17 16 15 20 20 N 1.31511 * 120.00160 * 6.45471 * 19 17 16 21 21 Si 1.86801 * 120.00201 * 186.45126 * 19 17 16 22 22 H 1.48502 * 109.47104 * 59.99786 * 21 19 17 23 23 H 1.48496 * 109.47408 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47157 * 300.00310 * 21 19 17 25 25 C 1.52999 * 117.49873 * 80.88680 * 16 15 12 26 26 C 1.53005 * 117.49892 * 149.54709 * 16 15 12 27 27 H 1.08994 * 109.47475 * 270.03225 * 1 2 3 28 28 H 1.09008 * 109.46743 * 30.02964 * 1 2 3 29 29 H 1.08998 * 109.47432 * 150.02313 * 1 2 3 30 30 H 1.08997 * 109.47045 * 89.97532 * 5 4 3 31 31 H 1.08998 * 109.46843 * 209.97681 * 5 4 3 32 32 H 1.08998 * 109.47077 * 329.97732 * 5 4 3 33 33 H 1.07995 * 126.12820 * 180.23992 * 6 4 3 34 34 H 1.09004 * 109.47358 * 299.99056 * 10 8 7 35 35 H 1.08998 * 109.47532 * 60.00124 * 10 8 7 36 36 H 1.09010 * 109.46780 * 180.02562 * 10 8 7 37 37 H 0.97005 * 119.99752 * 325.00226 * 11 8 7 38 38 H 1.08992 * 109.47409 * 54.35140 * 15 12 11 39 39 H 1.09005 * 109.47230 * 294.34546 * 15 12 11 40 40 H 0.96998 * 120.00500 * 185.03880 * 20 19 17 41 41 H 1.09003 * 117.49965 * 215.00577 * 25 16 15 42 42 H 1.09003 * 117.49841 * 0.02562 * 25 16 15 43 43 H 1.08993 * 117.49683 * 359.97426 * 26 16 15 44 44 H 1.08994 * 117.49517 * 144.97407 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0597 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7900 1.5006 0.0003 6 6 3.6141 -0.7155 0.0064 7 6 2.3271 -1.1332 0.0007 8 6 1.8597 -2.5658 0.0014 9 1 0.9467 -2.6499 0.5908 10 6 1.5822 -3.0124 -1.4354 11 7 2.8983 -3.4180 0.5856 12 16 2.4740 -4.7345 1.4962 13 8 1.5513 -4.2203 2.4467 14 8 3.7152 -5.2912 1.9069 15 6 1.6353 -5.8409 0.3288 16 6 1.3149 -7.1663 1.0227 17 6 2.5083 -7.9814 1.4498 18 1 2.8843 -7.9005 2.4590 19 6 3.1166 -8.8348 0.5539 20 7 2.7380 -8.8448 -0.7055 21 14 4.4785 -9.9767 1.1288 22 1 3.9546 -10.8795 2.1851 23 1 4.9638 -10.7853 -0.0183 24 1 5.6004 -9.1726 1.6767 25 6 0.0710 -7.2155 1.9121 26 6 0.0712 -7.9256 0.5560 27 1 -0.3634 0.0006 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3634 -0.8902 -0.5135 30 1 5.0824 1.7166 1.0278 31 1 5.6096 0.9974 -0.5127 32 1 4.5567 2.4325 -0.5146 33 1 4.4889 -1.3488 0.0120 34 1 0.8093 -2.3785 -1.8701 35 1 2.4952 -2.9284 -2.0249 36 1 1.2437 -4.0486 -1.4348 37 1 3.8346 -3.2110 0.4390 38 1 2.2847 -6.0264 -0.5266 39 1 0.7099 -5.3760 -0.0116 40 1 3.1137 -9.4948 -1.3198 41 1 0.1157 -7.8374 2.8062 42 1 -0.5195 -6.3037 2.0026 43 1 -0.5189 -7.4806 -0.2450 44 1 0.1164 -9.0146 0.5576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331617704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:00 Heat of formation + Delta-G solvation = 25.351910 kcal Electronic energy + Delta-G solvation = -26662.891921 eV Core-core repulsion = 22938.060488 eV Total energy + Delta-G solvation = -3724.831433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.42018 -36.74823 -36.56063 -36.02659 -35.04395 -33.90315 -32.00623 -30.30381 -29.97150 -28.81285 -28.02697 -25.67684 -25.38513 -22.89186 -21.21768 -20.74230 -19.87260 -19.49435 -18.51818 -17.38628 -16.55783 -16.32879 -15.73578 -15.64022 -15.02012 -14.72440 -14.52540 -14.28627 -13.83765 -13.77686 -13.56263 -13.41265 -13.23112 -13.03549 -12.60126 -12.27589 -12.18188 -12.03835 -11.87967 -11.77516 -11.38521 -11.28650 -11.25856 -11.07374 -10.99214 -10.87751 -10.56345 -10.48967 -10.45342 -10.08979 -9.74983 -9.30948 -9.27820 -8.93340 -8.51554 -8.40237 -8.08423 -6.11381 -4.20133 1.11922 1.76740 2.36807 2.63091 3.34598 3.36554 3.43937 3.46657 4.29491 4.40811 4.57385 4.67664 4.84256 4.89570 4.91710 5.04615 5.13713 5.16742 5.18299 5.20693 5.31046 5.37878 5.54471 5.57453 5.71650 5.71686 5.78525 5.86301 5.95036 6.02911 6.23263 6.28345 6.36038 6.42587 6.60292 6.62982 6.71486 6.87495 6.99819 7.24598 7.31395 7.40206 7.61722 7.84495 8.23013 8.85938 9.50470 10.97019 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.003642 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.355245 B = 7686.482073 C = 8309.052319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.085 3.915 3 N -0.299 5.299 4 N -0.379 5.379 5 C 0.104 3.896 6 C 0.065 3.935 7 C -0.229 4.229 8 C 0.226 3.774 9 H 0.096 0.904 10 C -0.173 4.173 11 N -1.125 6.125 12 S 2.604 3.396 13 O -0.977 6.977 14 O -0.946 6.946 15 C -0.554 4.554 16 C 0.043 3.957 17 C -0.506 4.506 18 H 0.069 0.931 19 C 0.080 3.920 20 N -0.877 5.877 21 Si 0.889 3.111 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.270 1.270 25 C -0.214 4.214 26 C -0.138 4.138 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.173 0.827 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.407 0.593 38 H 0.136 0.864 39 H 0.099 0.901 40 H 0.262 0.738 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 16.997 -3.682 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 N -0.122 5.122 4 N -0.161 5.161 5 C -0.038 4.038 6 C -0.081 4.081 7 C -0.242 4.242 8 C 0.117 3.883 9 H 0.114 0.886 10 C -0.232 4.232 11 N -0.881 5.881 12 S 2.701 3.299 13 O -0.967 6.967 14 O -0.936 6.936 15 C -0.687 4.687 16 C 0.040 3.960 17 C -0.543 4.543 18 H 0.087 0.913 19 C -0.124 4.124 20 N -0.513 5.513 21 Si 0.716 3.284 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.195 1.195 25 C -0.252 4.252 26 C -0.178 4.178 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.190 0.810 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.240 0.760 38 H 0.154 0.846 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.194 18.221 -2.911 18.453 hybrid contribution 1.126 -1.549 -0.654 2.024 sum 0.932 16.672 -3.565 17.074 Atomic orbital electron populations 1.20259 0.86558 1.03418 1.03426 1.22194 0.96927 0.89920 0.99145 1.77268 0.86362 1.22643 1.25900 1.48293 1.05514 1.04654 1.57623 1.21832 0.83668 0.94921 1.03349 1.22179 0.99315 0.84750 1.01884 1.19982 0.92168 0.95580 1.16430 1.18896 0.90475 0.84683 0.94237 0.88625 1.22456 1.02508 1.02205 0.96057 1.56058 1.14695 1.44904 1.72424 1.05210 0.75437 0.73534 0.75716 1.93501 1.66606 1.78311 1.58309 1.93565 1.42218 1.77672 1.80148 1.30075 1.11446 1.11374 1.15782 1.18308 0.89402 0.90933 0.97325 1.20513 1.11375 1.24390 0.98067 0.91272 1.24915 0.96307 0.96843 0.94379 1.69998 1.43776 1.34657 1.02828 0.86689 0.82721 0.80720 0.78297 1.20028 1.21261 1.19474 1.23254 1.04210 1.02310 0.95400 1.22526 1.01739 0.99062 0.94443 0.90126 0.90877 0.90071 0.90825 0.89469 0.89412 0.81038 0.91500 0.91864 0.91222 0.75989 0.84621 0.88232 0.92830 0.89524 0.90612 0.91491 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.21 36.01 0.37 -0.38 16 2 C 0.09 1.08 7.22 -82.41 -0.59 0.49 16 3 N -0.30 -4.00 12.58 33.67 0.42 -3.58 16 4 N -0.38 -4.31 4.01 -68.17 -0.27 -4.58 16 5 C 0.10 0.70 11.47 59.85 0.69 1.39 16 6 C 0.06 0.75 10.72 -17.22 -0.18 0.56 16 7 C -0.23 -2.93 5.23 -105.05 -0.55 -3.48 16 8 C 0.23 2.97 2.91 -69.09 -0.20 2.77 16 9 H 0.10 1.29 7.43 -51.93 -0.39 0.90 16 10 C -0.17 -1.99 9.46 37.16 0.35 -1.64 16 11 N -1.13 -16.77 5.28 -5.89 -0.03 -16.81 16 12 S 2.60 51.71 5.33 -107.50 -0.57 51.14 16 13 O -0.98 -21.15 17.39 -57.54 -1.00 -22.15 16 14 O -0.95 -22.37 17.10 -57.54 -0.98 -23.35 16 15 C -0.55 -11.21 4.88 37.16 0.18 -11.03 16 16 C 0.04 1.02 1.34 -155.66 -0.21 0.81 16 17 C -0.51 -13.70 7.66 -34.44 -0.26 -13.96 16 18 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 19 C 0.08 2.15 5.39 -17.82 -0.10 2.06 16 20 N -0.88 -23.77 12.93 55.43 0.72 -23.05 16 21 Si 0.89 21.24 29.55 -169.99 -5.02 16.22 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.21 -4.62 9.96 -26.69 -0.27 -4.88 16 26 C -0.14 -3.09 9.44 -26.69 -0.25 -3.34 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 29 H 0.08 0.67 7.70 -51.93 -0.40 0.27 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.17 1.52 7.08 -52.49 -0.37 1.15 16 34 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.84 5.97 -51.92 -0.31 0.53 16 37 H 0.41 5.24 7.31 -34.47 -0.25 4.99 16 38 H 0.14 2.83 8.14 -51.93 -0.42 2.41 16 39 H 0.10 1.68 7.11 -51.92 -0.37 1.31 16 40 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 41 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -35.17 377.54 -8.78 -43.94 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.69 Total: 7.18 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: -1.03 Total: -30.64 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.84 Total: -48.02 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -1.98 Total: -45.51 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 51.71 SS G_CDS: -0.57 Total: 51.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.17 -8.78 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331617704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.296 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds