Wall clock time and date at job start Tue Mar 31 2020 15:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30828 * 125.90171 * 2 1 4 4 N 1.40089 * 108.20899 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.04116 * 179.97438 * 4 3 2 6 6 C 1.34952 * 107.91950 * 359.75683 * 4 3 2 7 7 C 1.35315 * 107.74947 * 0.38864 * 6 4 3 8 8 C 1.50700 * 126.04398 * 179.87604 * 7 6 4 9 9 H 1.08998 * 109.47027 * 144.69004 * 8 7 6 10 10 C 1.53000 * 109.46698 * 264.69190 * 8 7 6 11 11 N 1.46495 * 109.47033 * 24.68803 * 8 7 6 12 12 S 1.65601 * 120.00247 * 145.00374 * 11 8 7 13 13 O 1.42102 * 104.27176 * 308.92718 * 12 11 8 14 14 O 1.42096 * 104.27737 * 181.07292 * 12 11 8 15 15 C 1.81397 * 104.44810 * 64.99874 * 12 11 8 16 16 C 1.53003 * 109.47007 * 174.34873 * 15 12 11 17 17 C 1.50698 * 115.54935 * 295.21555 * 16 15 12 18 18 H 1.08001 * 119.99726 * 95.16712 * 17 16 15 19 19 C 1.37871 * 120.00139 * 274.88884 * 17 16 15 20 20 N 1.31511 * 120.00160 * 6.45471 * 19 17 16 21 21 Si 1.86801 * 120.00201 * 186.45126 * 19 17 16 22 22 H 1.48502 * 109.47104 * 59.99786 * 21 19 17 23 23 H 1.48496 * 109.47408 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47157 * 300.00310 * 21 19 17 25 25 C 1.52999 * 117.49873 * 80.88680 * 16 15 12 26 26 C 1.53005 * 117.49892 * 149.54709 * 16 15 12 27 27 H 1.08994 * 109.47475 * 270.03225 * 1 2 3 28 28 H 1.09008 * 109.46743 * 30.02964 * 1 2 3 29 29 H 1.08998 * 109.47432 * 150.02313 * 1 2 3 30 30 H 1.08997 * 109.47045 * 89.97532 * 5 4 3 31 31 H 1.08998 * 109.46843 * 209.97681 * 5 4 3 32 32 H 1.08998 * 109.47077 * 329.97732 * 5 4 3 33 33 H 1.07995 * 126.12820 * 180.23992 * 6 4 3 34 34 H 1.09004 * 109.47358 * 299.99056 * 10 8 7 35 35 H 1.08998 * 109.47532 * 60.00124 * 10 8 7 36 36 H 1.09010 * 109.46780 * 180.02562 * 10 8 7 37 37 H 0.97005 * 119.99752 * 325.00226 * 11 8 7 38 38 H 1.08992 * 109.47409 * 54.35140 * 15 12 11 39 39 H 1.09005 * 109.47230 * 294.34546 * 15 12 11 40 40 H 0.96998 * 120.00500 * 185.03880 * 20 19 17 41 41 H 1.09003 * 117.49965 * 215.00577 * 25 16 15 42 42 H 1.09003 * 117.49841 * 0.02562 * 25 16 15 43 43 H 1.08993 * 117.49683 * 359.97426 * 26 16 15 44 44 H 1.08994 * 117.49517 * 144.97407 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0597 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7900 1.5006 0.0003 6 6 3.6141 -0.7155 0.0064 7 6 2.3271 -1.1332 0.0007 8 6 1.8597 -2.5658 0.0014 9 1 0.9467 -2.6499 0.5908 10 6 1.5822 -3.0124 -1.4354 11 7 2.8983 -3.4180 0.5856 12 16 2.4740 -4.7345 1.4962 13 8 1.5513 -4.2203 2.4467 14 8 3.7152 -5.2912 1.9069 15 6 1.6353 -5.8409 0.3288 16 6 1.3149 -7.1663 1.0227 17 6 2.5083 -7.9814 1.4498 18 1 2.8843 -7.9005 2.4590 19 6 3.1166 -8.8348 0.5539 20 7 2.7380 -8.8448 -0.7055 21 14 4.4785 -9.9767 1.1288 22 1 3.9546 -10.8795 2.1851 23 1 4.9638 -10.7853 -0.0183 24 1 5.6004 -9.1726 1.6767 25 6 0.0710 -7.2155 1.9121 26 6 0.0712 -7.9256 0.5560 27 1 -0.3634 0.0006 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3634 -0.8902 -0.5135 30 1 5.0824 1.7166 1.0278 31 1 5.6096 0.9974 -0.5127 32 1 4.5567 2.4325 -0.5146 33 1 4.4889 -1.3488 0.0120 34 1 0.8093 -2.3785 -1.8701 35 1 2.4952 -2.9284 -2.0249 36 1 1.2437 -4.0486 -1.4348 37 1 3.8346 -3.2110 0.4390 38 1 2.2847 -6.0264 -0.5266 39 1 0.7099 -5.3760 -0.0116 40 1 3.1137 -9.4948 -1.3198 41 1 0.1157 -7.8374 2.8062 42 1 -0.5195 -6.3037 2.0026 43 1 -0.5189 -7.4806 -0.2450 44 1 0.1164 -9.0146 0.5576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331617704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:59 Heat of formation + Delta-G solvation = 0.678484 kcal Electronic energy + Delta-G solvation = -26663.961841 eV Core-core repulsion = 22938.060488 eV Total energy + Delta-G solvation = -3725.901353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.28256 -38.51965 -37.98899 -37.35326 -36.72918 -34.71113 -34.02249 -31.30850 -30.77266 -29.97665 -29.36394 -27.43201 -26.36974 -23.81038 -22.94943 -21.81890 -21.31693 -20.66048 -19.96787 -18.61241 -18.31601 -17.65518 -16.86593 -16.73559 -16.55715 -16.44221 -15.90691 -15.56321 -15.28262 -14.92894 -14.60546 -14.37844 -14.20892 -13.90236 -13.74019 -13.57742 -13.29050 -13.20165 -13.13397 -12.92928 -12.90261 -12.84897 -12.83669 -12.81062 -12.52766 -12.39243 -12.17135 -12.11832 -11.84715 -11.53956 -11.45819 -10.81939 -10.56892 -10.46134 -10.17296 -9.83547 -9.28169 -8.14568 -6.26760 -0.44435 0.90652 1.41880 1.44322 1.51372 1.65560 1.70635 2.08204 2.44526 3.02043 3.13738 3.40535 3.51265 3.55632 3.87270 3.97214 4.09008 4.21668 4.28928 4.38662 4.40981 4.43271 4.50295 4.53376 4.56124 4.67483 4.68156 4.84028 4.86832 4.89472 4.98752 5.01392 5.09388 5.16566 5.26737 5.34769 5.43990 5.53690 5.63781 5.74363 5.78138 6.10399 6.19102 6.28512 6.74326 6.78836 7.44576 8.92855 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.003642 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.355245 B = 7686.482073 C = 8309.052319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.074 3.926 3 N -0.329 5.329 4 N -0.381 5.381 5 C 0.093 3.907 6 C 0.062 3.938 7 C -0.250 4.250 8 C 0.224 3.776 9 H 0.093 0.907 10 C -0.172 4.172 11 N -1.111 6.111 12 S 2.621 3.379 13 O -0.997 6.997 14 O -0.991 6.991 15 C -0.548 4.548 16 C 0.010 3.990 17 C -0.524 4.524 18 H 0.047 0.953 19 C 0.043 3.957 20 N -0.892 5.892 21 Si 0.931 3.069 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.278 1.278 25 C -0.204 4.204 26 C -0.135 4.135 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.195 0.805 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.418 0.582 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.264 0.736 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 18.053 -4.616 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 N -0.153 5.153 4 N -0.162 5.162 5 C -0.046 4.046 6 C -0.085 4.085 7 C -0.263 4.263 8 C 0.117 3.883 9 H 0.111 0.889 10 C -0.231 4.231 11 N -0.871 5.871 12 S 2.718 3.282 13 O -0.987 6.987 14 O -0.981 6.981 15 C -0.681 4.681 16 C 0.008 3.992 17 C -0.561 4.561 18 H 0.065 0.935 19 C -0.160 4.160 20 N -0.528 5.528 21 Si 0.756 3.244 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.204 1.204 25 C -0.241 4.241 26 C -0.174 4.174 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.212 0.788 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.253 0.747 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.108 0.892 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.387 19.286 -3.842 19.669 hybrid contribution 1.213 -1.782 -0.349 2.184 sum 0.826 17.504 -4.191 18.018 Atomic orbital electron populations 1.20383 0.85026 1.04601 1.03879 1.22623 0.98167 0.89682 0.98724 1.77215 0.87524 1.23462 1.27052 1.48665 1.05844 1.05115 1.56591 1.22186 0.82940 0.95049 1.04452 1.22596 0.99822 0.85266 1.00808 1.20028 0.92899 0.95224 1.18107 1.19046 0.89607 0.84720 0.94974 0.88922 1.22451 1.03406 1.02213 0.94981 1.55594 1.15911 1.43567 1.71995 1.04408 0.74274 0.73778 0.75699 1.93470 1.66993 1.78683 1.59567 1.93501 1.44115 1.79072 1.81405 1.29946 1.13122 1.10010 1.15038 1.18436 0.89008 0.92465 0.99309 1.20674 1.12774 1.25437 0.97254 0.93454 1.25433 0.97899 0.97956 0.94672 1.70036 1.44585 1.35090 1.03097 0.86039 0.80545 0.79453 0.78339 1.19610 1.20025 1.20371 1.23308 1.02946 1.02998 0.94855 1.22489 1.01247 0.97992 0.95658 0.89964 0.89969 0.88659 0.89960 0.86875 0.88784 0.78820 0.89501 0.91486 0.91707 0.74682 0.85349 0.84743 0.92708 0.90022 0.88144 0.89152 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.21 71.24 0.73 -0.69 16 2 C 0.07 1.79 7.22 43.11 0.31 2.10 16 3 N -0.33 -8.42 12.58 -47.38 -0.60 -9.01 16 4 N -0.38 -8.00 4.01 -369.58 -1.48 -9.48 16 5 C 0.09 1.07 11.47 127.77 1.47 2.54 16 6 C 0.06 1.32 10.72 83.54 0.90 2.21 16 7 C -0.25 -5.96 5.23 -20.14 -0.11 -6.06 16 8 C 0.22 5.46 2.91 44.25 0.13 5.59 16 9 H 0.09 2.31 7.43 -2.39 -0.02 2.29 16 10 C -0.17 -3.52 9.46 71.98 0.68 -2.84 16 11 N -1.11 -31.55 5.28 -172.53 -0.91 -32.46 16 12 S 2.62 102.31 5.33 -56.49 -0.30 102.01 16 13 O -1.00 -42.26 17.39 -127.65 -2.22 -44.48 16 14 O -0.99 -47.30 17.10 -127.65 -2.18 -49.48 16 15 C -0.55 -21.48 4.88 71.98 0.35 -21.13 16 16 C 0.01 0.47 1.34 -52.93 -0.07 0.40 16 17 C -0.52 -28.63 7.66 25.60 0.20 -28.43 16 18 H 0.05 2.72 7.82 -2.91 -0.02 2.69 16 19 C 0.04 2.31 5.39 84.65 0.46 2.77 16 20 N -0.89 -48.09 12.93 21.44 0.28 -47.81 16 21 Si 0.93 43.61 29.55 68.60 2.03 45.64 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 25 C -0.20 -8.52 9.96 30.62 0.30 -8.22 16 26 C -0.13 -5.85 9.44 30.62 0.29 -5.56 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.09 1.36 7.70 -2.39 -0.02 1.34 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.19 2.98 7.08 -2.91 -0.02 2.96 16 34 H 0.09 1.43 7.88 -2.38 -0.02 1.42 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.39 5.97 -2.38 -0.01 1.37 16 37 H 0.42 10.15 7.31 -96.74 -0.71 9.44 16 38 H 0.13 5.25 8.14 -2.39 -0.02 5.23 16 39 H 0.13 4.20 7.11 -2.39 -0.02 4.18 16 40 H 0.26 13.61 8.32 -92.71 -0.77 12.84 16 41 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 42 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 43 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 44 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -75.17 377.54 0.54 -74.63 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.30 Total: 27.78 kcal Atomic # 6 Polarization: -62.96 SS G_CDS: 5.63 Total: -57.33 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -2.71 Total: -98.76 kcal Atomic # 8 Polarization: -89.56 SS G_CDS: -4.40 Total: -93.97 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 102.31 SS G_CDS: -0.30 Total: 102.01 kcal Total: -75.17 0.54 -74.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331617704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.307 kcal (2) G-P(sol) polarization free energy of solvation -75.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds