Wall clock time and date at job start Tue Mar 31 2020 15:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29946 * 126.28855 * 2 1 4 4 O 1.21297 * 110.25125 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81239 * 0.02562 * 4 3 2 6 6 C 1.50707 * 126.54780 * 179.97438 * 5 4 3 7 7 H 1.08998 * 110.91315 * 182.47127 * 6 5 4 8 8 C 1.55158 * 111.00596 * 306.37529 * 6 5 4 9 9 C 1.54328 * 103.01900 * 153.38539 * 8 6 5 10 10 N 1.47021 * 107.26879 * 338.13561 * 9 8 6 11 11 C 1.34778 * 125.65157 * 178.85107 * 10 9 8 12 12 O 1.21551 * 120.00271 * 186.29049 * 11 10 9 13 13 C 1.47889 * 119.99729 * 6.28809 * 11 10 9 14 14 C 1.39918 * 120.02362 * 172.23378 * 13 11 10 15 15 C 1.38326 * 120.36163 * 179.97438 * 14 13 11 16 16 C 1.37751 * 120.40852 * 0.02562 * 15 14 13 17 17 C 1.40756 * 120.04404 * 359.97438 * 16 15 14 18 18 C 1.41433 * 120.18206 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99983 * 184.02577 * 18 17 16 20 20 C 1.39941 * 119.99799 * 4.02869 * 18 17 16 21 21 N 1.30827 * 119.99963 * 309.99331 * 20 18 17 22 22 Si 1.86799 * 119.99965 * 129.99413 * 20 18 17 23 23 H 1.48499 * 109.47225 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.46861 * 59.99809 * 22 20 18 25 25 H 1.48493 * 109.47204 * 300.00194 * 22 20 18 26 26 C 1.38992 * 120.02755 * 352.46167 * 13 11 10 27 27 C 1.47432 * 108.70249 * 358.59226 * 10 9 8 28 28 N 1.31130 * 106.90008 * 0.22425 * 5 4 3 29 29 H 1.09004 * 109.47241 * 90.02800 * 1 2 3 30 30 H 1.09000 * 109.47513 * 210.02202 * 1 2 3 31 31 H 1.08992 * 109.47497 * 330.02616 * 1 2 3 32 32 H 1.09000 * 110.71315 * 271.93995 * 8 6 5 33 33 H 1.08996 * 110.71783 * 35.03323 * 8 6 5 34 34 H 1.09001 * 109.99220 * 218.66703 * 9 8 6 35 35 H 1.09000 * 109.78425 * 97.49408 * 9 8 6 36 36 H 1.08009 * 119.81936 * 0.02562 * 14 13 11 37 37 H 1.07994 * 119.79646 * 180.02562 * 15 14 13 38 38 H 1.08005 * 119.98306 * 180.02562 * 16 15 14 39 39 H 0.96998 * 119.99863 * 354.75756 * 21 20 18 40 40 H 1.08006 * 120.20194 * 0.02562 * 26 13 11 41 41 H 1.08999 * 110.36816 * 143.19033 * 27 10 9 42 42 H 1.08996 * 110.36457 * 265.40545 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7123 0.0005 5 6 3.5298 -0.6212 0.0003 6 6 4.7970 -1.4370 0.0003 7 1 4.5735 -2.5029 -0.0438 8 6 5.7297 -1.0156 -1.1659 9 6 7.1327 -1.3848 -0.6397 10 7 7.0463 -1.4479 0.8266 11 6 8.0574 -1.7627 1.6603 12 8 7.8453 -1.8960 2.8497 13 6 9.4249 -1.9460 1.1279 14 6 10.5017 -2.1114 2.0059 15 6 11.7835 -2.2839 1.5155 16 6 12.0151 -2.2944 0.1577 17 6 10.9444 -2.1295 -0.7411 18 6 11.1789 -2.1392 -2.1358 19 1 10.3666 -1.9477 -2.8213 20 6 12.4635 -2.3969 -2.6275 21 7 13.4900 -1.7402 -2.1517 22 14 12.7124 -3.6787 -3.9634 23 1 14.1545 -3.7611 -4.3079 24 1 11.9370 -3.2932 -5.1698 25 1 12.2433 -5.0002 -3.4750 26 6 9.6421 -1.9493 -0.2449 27 6 5.6719 -1.1037 1.2344 28 7 2.3029 -1.0841 -0.0052 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 5.4942 -1.5770 -2.0700 33 1 5.6573 0.0564 -1.3494 34 1 7.8542 -0.6234 -0.9360 35 1 7.4315 -2.3555 -1.0355 36 1 10.3309 -2.1052 3.0724 37 1 12.6079 -2.4112 2.2015 38 1 13.0187 -2.4300 -0.2177 39 1 13.3532 -1.0224 -1.5138 40 1 8.8145 -1.8179 -0.9263 41 1 5.3675 -1.7073 2.0894 42 1 5.6023 -0.0430 1.4756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332081410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:08 Heat of formation + Delta-G solvation = 71.929259 kcal Electronic energy + Delta-G solvation = -26796.711711 eV Core-core repulsion = 22938.456072 eV Total energy + Delta-G solvation = -3858.255639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.86230 -40.12239 -37.79772 -37.01669 -36.33532 -34.13699 -33.84104 -31.53750 -30.31880 -29.73910 -29.49485 -28.66917 -25.22865 -24.98412 -23.89275 -23.12659 -21.60558 -21.01344 -20.52027 -19.62379 -18.33996 -17.93850 -17.58986 -16.76706 -16.52225 -15.32288 -15.01112 -14.66080 -14.54700 -14.25757 -14.03155 -13.94638 -13.81846 -13.56780 -13.36230 -13.12006 -12.75572 -12.66541 -12.49095 -12.40626 -12.16494 -11.85682 -11.63002 -11.45577 -11.36405 -11.26069 -11.10882 -10.98084 -10.64173 -10.51329 -10.22344 -10.10141 -9.65189 -9.20530 -8.86391 -8.52004 -7.86645 -7.78958 -7.53827 -4.53319 0.83406 1.91147 2.05086 2.42972 2.74884 3.02413 3.08054 3.15170 3.27878 3.40696 3.67884 3.75409 3.83613 4.11572 4.24732 4.28308 4.51702 4.84212 4.97287 5.00700 5.05842 5.12810 5.24570 5.28388 5.36680 5.47102 5.56817 5.64427 5.66713 5.72862 5.80090 5.91499 6.07923 6.35466 6.42235 6.65044 6.77797 6.97613 7.17740 7.42292 7.56647 7.64370 7.70248 7.88510 7.90982 7.92920 8.15319 8.59899 8.64317 8.72301 9.61697 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.002786 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.300131 B =10048.072963 C =11259.660896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.386 5.386 4 O 0.081 5.919 5 C 0.202 3.798 6 C -0.014 4.014 7 H 0.133 0.867 8 C -0.130 4.130 9 C 0.099 3.901 10 N -0.619 5.619 11 C 0.583 3.417 12 O -0.550 6.550 13 C -0.092 4.092 14 C -0.215 4.215 15 C -0.082 4.082 16 C -0.231 4.231 17 C 0.091 3.909 18 C -0.534 4.534 19 H 0.081 0.919 20 C 0.059 3.941 21 N -0.750 5.750 22 Si 1.054 2.946 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.240 4.240 27 C 0.117 3.883 28 N -0.480 5.480 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.304 0.696 40 H 0.132 0.868 41 H 0.089 0.911 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.709 1.651 -2.241 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 N -0.094 5.094 4 O 0.023 5.977 5 C -0.018 4.018 6 C -0.035 4.035 7 H 0.151 0.849 8 C -0.168 4.168 9 C -0.024 4.024 10 N -0.354 5.354 11 C 0.377 3.623 12 O -0.429 6.429 13 C -0.095 4.095 14 C -0.235 4.235 15 C -0.101 4.101 16 C -0.250 4.250 17 C 0.088 3.912 18 C -0.558 4.558 19 H 0.099 0.901 20 C -0.171 4.171 21 N -0.369 5.369 22 Si 0.876 3.124 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.259 4.259 27 C -0.007 4.007 28 N -0.214 5.214 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.149 0.851 41 H 0.107 0.893 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.197 1.386 -2.403 16.433 hybrid contribution -0.994 0.784 0.956 1.586 sum -17.191 2.170 -1.447 17.388 Atomic orbital electron populations 1.20139 0.82867 1.04714 1.04325 1.25935 1.00650 0.83518 1.00542 1.74665 0.89349 1.23881 1.21520 1.85296 1.22310 1.24599 1.65486 1.28330 0.96208 0.82087 0.95220 1.21054 0.85263 0.98709 0.98503 0.84906 1.22974 0.93359 1.03365 0.97137 1.22641 0.95929 1.03404 0.80406 1.48244 1.09412 1.70664 1.07069 1.18684 0.84336 0.74559 0.84741 1.90681 1.84304 1.51965 1.15921 1.19191 0.90180 1.05619 0.94537 1.20264 0.91889 1.13929 0.97392 1.20534 0.95213 0.99147 0.95179 1.21429 0.99134 1.11721 0.92730 1.17430 0.91100 0.89700 0.92955 1.20424 0.97675 1.45446 0.92291 0.90090 1.27186 0.92120 0.97842 0.99939 1.70523 1.35641 1.12016 1.18722 0.83816 0.77333 0.76258 0.75014 1.19809 1.19702 1.19499 1.22157 0.98102 1.12302 0.93295 1.22090 0.81523 1.01450 0.95656 1.71926 0.99562 1.29373 1.20537 0.89288 0.88972 0.89481 0.88548 0.89463 0.88831 0.89147 0.88261 0.88852 0.87291 0.88255 0.85078 0.89269 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.00 0.38 -0.04 16 2 C 0.17 1.84 8.22 -156.37 -1.28 0.55 16 3 N -0.39 -4.80 12.16 30.89 0.38 -4.43 16 4 O 0.08 0.98 11.21 18.11 0.20 1.18 16 5 C 0.20 2.25 7.12 -13.06 -0.09 2.16 16 6 C -0.01 -0.14 3.58 -89.62 -0.32 -0.46 16 7 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 8 C -0.13 -1.20 6.41 -24.89 -0.16 -1.36 16 9 C 0.10 1.27 4.87 -3.06 -0.01 1.25 16 10 N -0.62 -9.71 3.33 -176.01 -0.59 -10.30 16 11 C 0.58 11.89 7.80 -12.31 -0.10 11.80 16 12 O -0.55 -12.56 16.59 5.32 0.09 -12.47 16 13 C -0.09 -2.06 5.87 -105.04 -0.62 -2.67 16 14 C -0.21 -4.98 9.60 -38.92 -0.37 -5.35 16 15 C -0.08 -1.89 10.01 -39.73 -0.40 -2.29 16 16 C -0.23 -5.64 8.60 -38.81 -0.33 -5.97 16 17 C 0.09 2.21 5.69 -106.87 -0.61 1.60 16 18 C -0.53 -12.68 8.81 -37.73 -0.33 -13.01 16 19 H 0.08 1.84 8.06 -52.48 -0.42 1.41 16 20 C 0.06 1.34 4.70 -17.34 -0.08 1.26 16 21 N -0.75 -17.88 12.00 55.55 0.67 -17.22 16 22 Si 1.05 19.49 30.06 -169.99 -5.11 14.38 16 23 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 25 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 26 C -0.24 -5.26 8.36 -38.44 -0.32 -5.58 16 27 C 0.12 1.48 6.39 -2.52 -0.02 1.46 16 28 N -0.48 -5.71 11.55 -9.87 -0.11 -5.82 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.77 7.95 -51.93 -0.41 0.35 16 34 H 0.09 1.30 6.72 -51.93 -0.35 0.95 16 35 H 0.09 1.19 6.77 -51.93 -0.35 0.84 16 36 H 0.10 2.25 7.66 -52.48 -0.40 1.85 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.11 2.70 5.55 -52.48 -0.29 2.41 16 39 H 0.30 7.38 7.43 -40.82 -0.30 7.08 16 40 H 0.13 2.45 2.74 -58.19 -0.16 2.29 16 41 H 0.09 1.18 7.98 -51.93 -0.41 0.76 16 42 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -29.62 352.41 -8.69 -38.31 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -4.86 Total: 7.71 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -4.67 Total: -16.66 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.34 Total: -37.77 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.29 Total: -11.29 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.11 Total: 14.38 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.62 -8.69 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332081410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.239 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds