Wall clock time and date at job start Tue Mar 31 2020 15:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29946 * 126.28855 * 2 1 4 4 O 1.21297 * 110.25125 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81239 * 0.02562 * 4 3 2 6 6 C 1.50707 * 126.54780 * 179.97438 * 5 4 3 7 7 H 1.08998 * 110.91315 * 182.47127 * 6 5 4 8 8 C 1.55158 * 111.00596 * 306.37529 * 6 5 4 9 9 C 1.54328 * 103.01900 * 153.38539 * 8 6 5 10 10 N 1.47021 * 107.26879 * 338.13561 * 9 8 6 11 11 C 1.34778 * 125.65157 * 178.85107 * 10 9 8 12 12 O 1.21551 * 120.00271 * 186.29049 * 11 10 9 13 13 C 1.47889 * 119.99729 * 6.28809 * 11 10 9 14 14 C 1.39918 * 120.02362 * 172.23378 * 13 11 10 15 15 C 1.38326 * 120.36163 * 179.97438 * 14 13 11 16 16 C 1.37751 * 120.40852 * 0.02562 * 15 14 13 17 17 C 1.40756 * 120.04404 * 359.97438 * 16 15 14 18 18 C 1.41433 * 120.18206 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99983 * 184.02577 * 18 17 16 20 20 C 1.39941 * 119.99799 * 4.02869 * 18 17 16 21 21 N 1.30827 * 119.99963 * 309.99331 * 20 18 17 22 22 Si 1.86799 * 119.99965 * 129.99413 * 20 18 17 23 23 H 1.48499 * 109.47225 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.46861 * 59.99809 * 22 20 18 25 25 H 1.48493 * 109.47204 * 300.00194 * 22 20 18 26 26 C 1.38992 * 120.02755 * 352.46167 * 13 11 10 27 27 C 1.47432 * 108.70249 * 358.59226 * 10 9 8 28 28 N 1.31130 * 106.90008 * 0.22425 * 5 4 3 29 29 H 1.09004 * 109.47241 * 90.02800 * 1 2 3 30 30 H 1.09000 * 109.47513 * 210.02202 * 1 2 3 31 31 H 1.08992 * 109.47497 * 330.02616 * 1 2 3 32 32 H 1.09000 * 110.71315 * 271.93995 * 8 6 5 33 33 H 1.08996 * 110.71783 * 35.03323 * 8 6 5 34 34 H 1.09001 * 109.99220 * 218.66703 * 9 8 6 35 35 H 1.09000 * 109.78425 * 97.49408 * 9 8 6 36 36 H 1.08009 * 119.81936 * 0.02562 * 14 13 11 37 37 H 1.07994 * 119.79646 * 180.02562 * 15 14 13 38 38 H 1.08005 * 119.98306 * 180.02562 * 16 15 14 39 39 H 0.96998 * 119.99863 * 354.75756 * 21 20 18 40 40 H 1.08006 * 120.20194 * 0.02562 * 26 13 11 41 41 H 1.08999 * 110.36816 * 143.19033 * 27 10 9 42 42 H 1.08996 * 110.36457 * 265.40545 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7123 0.0005 5 6 3.5298 -0.6212 0.0003 6 6 4.7970 -1.4370 0.0003 7 1 4.5735 -2.5029 -0.0438 8 6 5.7297 -1.0156 -1.1659 9 6 7.1327 -1.3848 -0.6397 10 7 7.0463 -1.4479 0.8266 11 6 8.0574 -1.7627 1.6603 12 8 7.8453 -1.8960 2.8497 13 6 9.4249 -1.9460 1.1279 14 6 10.5017 -2.1114 2.0059 15 6 11.7835 -2.2839 1.5155 16 6 12.0151 -2.2944 0.1577 17 6 10.9444 -2.1295 -0.7411 18 6 11.1789 -2.1392 -2.1358 19 1 10.3666 -1.9477 -2.8213 20 6 12.4635 -2.3969 -2.6275 21 7 13.4900 -1.7402 -2.1517 22 14 12.7124 -3.6787 -3.9634 23 1 14.1545 -3.7611 -4.3079 24 1 11.9370 -3.2932 -5.1698 25 1 12.2433 -5.0002 -3.4750 26 6 9.6421 -1.9493 -0.2449 27 6 5.6719 -1.1037 1.2344 28 7 2.3029 -1.0841 -0.0052 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 5.4942 -1.5770 -2.0700 33 1 5.6573 0.0564 -1.3494 34 1 7.8542 -0.6234 -0.9360 35 1 7.4315 -2.3555 -1.0355 36 1 10.3309 -2.1052 3.0724 37 1 12.6079 -2.4112 2.2015 38 1 13.0187 -2.4300 -0.2177 39 1 13.3532 -1.0224 -1.5138 40 1 8.8145 -1.8179 -0.9263 41 1 5.3675 -1.7073 2.0894 42 1 5.6023 -0.0430 1.4756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332081410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:07 Heat of formation + Delta-G solvation = 54.350813 kcal Electronic energy + Delta-G solvation = -26797.473969 eV Core-core repulsion = 22938.456072 eV Total energy + Delta-G solvation = -3859.017897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.72132 -41.49677 -39.27774 -38.60371 -37.17319 -35.87481 -34.90273 -32.69883 -31.83149 -31.36922 -30.27935 -29.80026 -27.00953 -26.24197 -24.84330 -24.12344 -23.12331 -22.58936 -21.49487 -21.16427 -19.56848 -19.17356 -18.57766 -18.04020 -17.74895 -16.91571 -16.61355 -15.93941 -15.82511 -15.68850 -15.31400 -14.91275 -14.83117 -14.56549 -14.48179 -14.29379 -14.04871 -13.93348 -13.62420 -13.53985 -13.37405 -13.25884 -13.05997 -12.72243 -12.66703 -12.26684 -12.23442 -12.19959 -11.97579 -11.93118 -11.84066 -11.32057 -11.00982 -10.77441 -10.62625 -9.90158 -9.66504 -9.56506 -9.35277 -6.37320 -0.02877 0.31169 1.00682 1.08512 1.51149 1.52700 1.61234 1.84328 1.90616 2.04847 2.28031 2.54181 2.58196 2.99878 3.17650 3.33852 3.53678 3.74841 3.83119 4.02136 4.10918 4.13967 4.34722 4.46099 4.48723 4.57049 4.61449 4.62318 4.64078 4.74372 4.81946 4.83011 4.88456 4.98522 5.02342 5.07702 5.12995 5.24618 5.38403 5.61976 5.80992 5.81998 5.96678 6.11864 6.32521 6.34983 6.77923 6.90399 7.03987 7.08259 7.77883 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.002786 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.300131 B =10048.072963 C =11259.660896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.165 3.835 3 N -0.408 5.408 4 O 0.070 5.930 5 C 0.206 3.794 6 C 0.001 3.999 7 H 0.149 0.851 8 C -0.114 4.114 9 C 0.089 3.911 10 N -0.611 5.611 11 C 0.579 3.421 12 O -0.584 6.584 13 C -0.101 4.101 14 C -0.237 4.237 15 C -0.083 4.083 16 C -0.261 4.261 17 C 0.065 3.935 18 C -0.547 4.547 19 H 0.091 0.909 20 C 0.026 3.974 21 N -0.765 5.765 22 Si 1.104 2.896 23 H -0.275 1.275 24 H -0.246 1.246 25 H -0.268 1.268 26 C -0.235 4.235 27 C 0.113 3.887 28 N -0.494 5.494 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.292 0.708 40 H 0.165 0.835 41 H 0.083 0.917 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.010 1.164 -4.340 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 N -0.119 5.119 4 O 0.015 5.985 5 C -0.014 4.014 6 C -0.020 4.020 7 H 0.166 0.834 8 C -0.152 4.152 9 C -0.032 4.032 10 N -0.343 5.343 11 C 0.372 3.628 12 O -0.465 6.465 13 C -0.104 4.104 14 C -0.257 4.257 15 C -0.102 4.102 16 C -0.281 4.281 17 C 0.063 3.937 18 C -0.572 4.572 19 H 0.109 0.891 20 C -0.200 4.200 21 N -0.383 5.383 22 Si 0.921 3.079 23 H -0.199 1.199 24 H -0.169 1.169 25 H -0.193 1.193 26 C -0.253 4.253 27 C -0.010 4.010 28 N -0.228 5.228 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.182 0.818 41 H 0.101 0.899 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.521 0.931 -4.526 19.088 hybrid contribution -0.359 0.992 1.633 1.945 sum -18.880 1.924 -2.893 19.197 Atomic orbital electron populations 1.20374 0.80204 1.05824 1.05733 1.26687 1.02222 0.82868 0.99006 1.74671 0.89603 1.24701 1.22923 1.85274 1.22420 1.24937 1.65867 1.28423 0.96370 0.81907 0.94727 1.20968 0.84488 0.99358 0.97149 0.83381 1.22943 0.90217 1.04494 0.97582 1.22760 0.98479 1.03393 0.78570 1.48161 1.09651 1.68455 1.08070 1.18378 0.84645 0.75105 0.84682 1.90655 1.84800 1.53827 1.17244 1.19490 0.91334 1.04802 0.94759 1.20409 0.92500 1.15202 0.97612 1.20715 0.95866 0.98432 0.95140 1.21438 0.98945 1.14239 0.93445 1.17815 0.92078 0.90291 0.93544 1.20683 0.98466 1.45722 0.92289 0.89086 1.28540 0.91670 0.98589 1.01156 1.70618 1.36104 1.12408 1.19197 0.83186 0.77507 0.73817 0.73416 1.19948 1.16938 1.19258 1.22602 0.98354 1.10623 0.93743 1.22235 0.80217 1.01639 0.96932 1.71950 0.99912 1.29878 1.21073 0.87599 0.87822 0.88394 0.85527 0.88552 0.89584 0.88819 0.88507 0.87150 0.88385 0.89600 0.81840 0.89862 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 71.23 0.75 0.06 16 2 C 0.16 3.30 8.22 138.46 1.14 4.44 16 3 N -0.41 -9.50 12.16 -60.34 -0.73 -10.23 16 4 O 0.07 1.58 11.21 74.87 0.84 2.42 16 5 C 0.21 4.12 7.12 88.38 0.63 4.75 16 6 C 0.00 0.02 3.58 -10.15 -0.04 -0.02 16 7 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 8 C -0.11 -1.72 6.41 31.78 0.20 -1.52 16 9 C 0.09 2.09 4.87 86.73 0.42 2.51 16 10 N -0.61 -18.45 3.33 -829.06 -2.76 -21.21 16 11 C 0.58 23.66 7.80 86.80 0.68 24.34 16 12 O -0.58 -27.04 16.59 -3.88 -0.06 -27.10 16 13 C -0.10 -4.54 5.87 -20.13 -0.12 -4.66 16 14 C -0.24 -11.30 9.60 22.70 0.22 -11.08 16 15 C -0.08 -3.94 10.01 22.18 0.22 -3.72 16 16 C -0.26 -13.12 8.60 22.77 0.20 -12.93 16 17 C 0.07 3.20 5.69 -21.32 -0.12 3.08 16 18 C -0.55 -25.73 8.81 23.47 0.21 -25.52 16 19 H 0.09 3.99 8.06 -2.91 -0.02 3.97 16 20 C 0.03 1.17 4.70 85.26 0.40 1.57 16 21 N -0.77 -36.91 12.00 21.83 0.26 -36.64 16 22 Si 1.10 37.95 30.06 68.60 2.06 40.01 16 23 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 24 H -0.25 -7.41 7.11 99.48 0.71 -6.70 16 25 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 26 C -0.23 -10.23 8.36 23.01 0.19 -10.04 16 27 C 0.11 2.69 6.39 86.85 0.56 3.25 16 28 N -0.49 -10.61 11.55 -303.21 -3.50 -14.11 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.36 7.95 -2.39 -0.02 1.34 16 34 H 0.09 2.21 6.72 -2.39 -0.02 2.20 16 35 H 0.09 2.20 6.77 -2.39 -0.02 2.18 16 36 H 0.10 4.56 7.66 -2.91 -0.02 4.54 16 37 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.10 5.05 5.55 -2.91 -0.02 5.03 16 39 H 0.29 14.63 7.43 -92.71 -0.69 13.94 16 40 H 0.16 5.86 2.74 -8.27 -0.02 5.84 16 41 H 0.08 2.12 7.98 -2.39 -0.02 2.10 16 42 H 0.08 1.83 8.03 -2.39 -0.02 1.81 16 Total: -1.00 -65.43 352.41 2.78 -62.65 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 1.14 Total: 29.71 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 5.53 Total: -25.49 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -6.73 Total: -82.19 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.78 Total: -24.69 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.06 Total: 40.01 kcal Total: -65.43 2.78 -62.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332081410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.004 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds