Wall clock time and date at job start Tue Mar 31 2020 15:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29943 * 126.28783 * 2 1 4 4 O 1.21299 * 110.24938 * 179.97438 * 3 2 1 5 5 C 1.33645 * 109.81245 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.54879 * 180.02562 * 5 4 3 7 7 H 1.08991 * 110.88682 * 177.55197 * 6 5 4 8 8 C 1.55158 * 111.00327 * 53.62861 * 6 5 4 9 9 C 1.54327 * 102.94286 * 206.42242 * 8 6 5 10 10 N 1.47022 * 107.27099 * 22.19392 * 9 8 6 11 11 C 1.34777 * 125.65055 * 181.09959 * 10 9 8 12 12 O 1.21543 * 120.00230 * 173.89968 * 11 10 9 13 13 C 1.47885 * 119.99754 * 353.89377 * 11 10 9 14 14 C 1.39918 * 120.02368 * 187.44229 * 13 11 10 15 15 C 1.38332 * 120.35760 * 179.78533 * 14 13 11 16 16 C 1.37759 * 120.41169 * 0.47320 * 15 14 13 17 17 C 1.40754 * 120.03630 * 359.78359 * 16 15 14 18 18 C 1.41435 * 120.17421 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00178 * 183.10502 * 18 17 16 20 20 C 1.39943 * 120.00326 * 3.10895 * 18 17 16 21 21 N 1.30821 * 119.99550 * 324.06876 * 20 18 17 22 22 Si 1.86792 * 120.00274 * 144.06605 * 20 18 17 23 23 H 1.48503 * 109.46983 * 94.99908 * 22 20 18 24 24 H 1.48499 * 109.47526 * 214.99978 * 22 20 18 25 25 H 1.48505 * 109.47214 * 334.99984 * 22 20 18 26 26 C 1.38994 * 120.02702 * 7.71489 * 13 11 10 27 27 C 1.47433 * 108.70337 * 1.05960 * 10 9 8 28 28 N 1.31129 * 106.89843 * 359.97438 * 5 4 3 29 29 H 1.09003 * 109.47324 * 270.00247 * 1 2 3 30 30 H 1.08992 * 109.46973 * 30.00375 * 1 2 3 31 31 H 1.08998 * 109.47081 * 150.00210 * 1 2 3 32 32 H 1.09005 * 110.72079 * 324.78538 * 8 6 5 33 33 H 1.08996 * 110.71851 * 88.05731 * 8 6 5 34 34 H 1.09004 * 109.88111 * 262.77852 * 9 8 6 35 35 H 1.09000 * 110.01299 * 141.68171 * 9 8 6 36 36 H 1.07998 * 119.82199 * 359.97438 * 14 13 11 37 37 H 1.08000 * 119.79416 * 180.20727 * 15 14 13 38 38 H 1.07998 * 119.98030 * 179.76425 * 16 15 14 39 39 H 0.96996 * 120.00126 * 179.97438 * 21 20 18 40 40 H 1.08003 * 120.19948 * 0.02562 * 26 13 11 41 41 H 1.08998 * 110.36773 * 217.03646 * 27 10 9 42 42 H 1.08993 * 110.36537 * 94.71223 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7123 0.0005 5 6 3.5298 -0.6213 0.0015 6 6 4.7969 -1.4371 0.0029 7 1 4.5729 -2.5028 0.0469 8 6 5.7287 -1.0151 1.1695 9 6 7.1309 -1.3899 0.6449 10 7 7.0469 -1.4484 -0.8217 11 6 8.0583 -1.7650 -1.6544 12 8 7.8486 -1.8906 -2.8450 13 6 9.4232 -1.9595 -1.1194 14 6 10.5003 -2.1337 -1.9954 15 6 11.7805 -2.3117 -1.5025 16 6 12.0086 -2.3293 -0.1441 17 6 10.9367 -2.1611 0.7526 18 6 11.1675 -2.1792 2.1478 19 1 10.3369 -2.1001 2.8337 20 6 12.4721 -2.2995 2.6399 21 7 13.3411 -3.0496 2.0125 22 14 12.9725 -1.3889 4.1921 23 1 12.8266 -2.2901 5.3634 24 1 14.3874 -0.9532 4.0761 25 1 12.1015 -0.1996 4.3710 26 6 9.6362 -1.9750 0.2540 27 6 5.6729 -1.1043 -1.2307 28 7 2.3030 -1.0842 0.0020 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 5.6587 0.0575 1.3504 33 1 5.4926 -1.5760 2.0738 34 1 7.4260 -2.3627 1.0384 35 1 7.8559 -0.6333 0.9448 36 1 10.3317 -2.1260 -3.0621 37 1 12.6057 -2.4420 -2.1869 38 1 13.0104 -2.4726 0.2331 39 1 14.2454 -3.1328 2.3533 40 1 8.8071 -1.8458 0.9339 41 1 5.3691 -1.7083 -2.0857 42 1 5.6030 -0.0435 -1.4707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332081411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:13 Heat of formation + Delta-G solvation = 78.057470 kcal Electronic energy + Delta-G solvation = -26769.583265 eV Core-core repulsion = 22911.593366 eV Total energy + Delta-G solvation = -3857.989900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.83958 -40.06628 -37.71067 -36.88582 -36.31308 -33.97129 -33.77014 -31.49089 -30.27460 -29.87406 -29.46872 -28.60015 -25.43072 -24.95605 -23.85872 -23.08172 -21.58765 -20.88384 -20.43950 -19.46274 -18.29741 -17.73839 -17.36690 -16.70057 -16.19382 -15.52388 -14.99624 -14.79406 -14.61162 -14.46089 -13.92971 -13.88707 -13.64503 -13.44651 -13.12972 -13.10154 -12.74850 -12.64109 -12.56812 -12.34326 -12.16852 -11.94758 -11.43884 -11.41944 -11.30884 -11.24789 -11.11457 -10.97620 -10.65597 -10.56260 -10.21621 -10.07821 -9.57243 -9.20311 -8.89314 -8.46786 -7.74540 -7.59505 -7.04097 -4.45206 0.85688 1.93334 2.16137 2.45803 2.67924 2.95665 2.99117 3.12197 3.15558 3.44057 3.73667 3.76787 3.79244 4.15453 4.30769 4.41195 4.54852 4.87459 5.00759 5.02279 5.09120 5.15918 5.26691 5.34532 5.50274 5.54934 5.58870 5.67285 5.71581 5.76915 5.84544 5.96072 6.18592 6.41743 6.48435 6.78389 6.81829 7.04467 7.18463 7.34135 7.62861 7.82166 7.86304 7.90679 7.98486 8.07404 8.46761 8.68346 8.72632 8.83163 9.84484 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.002819 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.629908 B = 9931.858404 C =11311.728670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.386 5.386 4 O 0.081 5.919 5 C 0.203 3.797 6 C -0.015 4.015 7 H 0.133 0.867 8 C -0.129 4.129 9 C 0.098 3.902 10 N -0.619 5.619 11 C 0.584 3.416 12 O -0.552 6.552 13 C -0.107 4.107 14 C -0.192 4.192 15 C -0.108 4.108 16 C -0.180 4.180 17 C 0.093 3.907 18 C -0.459 4.459 19 H 0.082 0.918 20 C 0.084 3.916 21 N -0.763 5.763 22 Si 0.902 3.098 23 H -0.269 1.269 24 H -0.273 1.273 25 H -0.256 1.256 26 C -0.236 4.236 27 C 0.117 3.883 28 N -0.481 5.481 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.284 0.716 40 H 0.131 0.869 41 H 0.088 0.912 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.665 4.060 2.277 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.095 5.095 4 O 0.023 5.977 5 C -0.018 4.018 6 C -0.036 4.036 7 H 0.151 0.849 8 C -0.168 4.168 9 C -0.024 4.024 10 N -0.354 5.354 11 C 0.378 3.622 12 O -0.431 6.431 13 C -0.110 4.110 14 C -0.212 4.212 15 C -0.126 4.126 16 C -0.199 4.199 17 C 0.090 3.910 18 C -0.486 4.486 19 H 0.100 0.900 20 C -0.138 4.138 21 N -0.385 5.385 22 Si 0.725 3.275 23 H -0.194 1.194 24 H -0.198 1.198 25 H -0.180 1.180 26 C -0.255 4.255 27 C -0.007 4.007 28 N -0.214 5.214 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.159 0.841 39 H 0.096 0.904 40 H 0.148 0.852 41 H 0.107 0.893 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.117 4.369 1.586 16.773 hybrid contribution 0.469 0.309 0.667 0.872 sum -15.648 4.678 2.253 16.487 Atomic orbital electron populations 1.20138 0.82890 1.04701 1.04308 1.25932 1.00643 0.83533 1.00560 1.74662 0.89361 1.23887 1.21541 1.85297 1.22293 1.24613 1.65496 1.28346 0.96220 0.82073 0.95154 1.21069 0.85257 0.98691 0.98578 0.84926 1.22978 0.93425 1.03307 0.97116 1.22654 0.95898 1.03445 0.80431 1.48242 1.09408 1.70734 1.07048 1.18686 0.84302 0.74467 0.84742 1.90675 1.84287 1.52278 1.15870 1.19144 0.90192 1.07132 0.94567 1.20396 0.92248 1.11227 0.97369 1.20700 0.95133 1.01066 0.95745 1.22224 1.01127 1.04842 0.91708 1.17537 0.90601 0.89439 0.93406 1.19520 0.92968 1.44151 0.91991 0.89951 1.26039 0.96575 0.92448 0.98724 1.69833 1.06072 1.24833 1.37810 0.86407 0.78809 0.81217 0.81088 1.19388 1.19833 1.17994 1.22226 0.98150 1.11825 0.93282 1.22083 0.81594 1.01401 0.95609 1.71926 0.99577 1.29365 1.20564 0.89300 0.89499 0.88980 0.89453 0.88575 0.89111 0.88769 0.88356 0.88882 0.84084 0.90449 0.85167 0.89315 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.17 1.84 8.22 -156.37 -1.28 0.56 16 3 N -0.39 -4.81 12.16 30.90 0.38 -4.44 16 4 O 0.08 0.98 11.22 18.10 0.20 1.18 16 5 C 0.20 2.27 7.12 -13.05 -0.09 2.17 16 6 C -0.01 -0.15 3.58 -89.62 -0.32 -0.47 16 7 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 8 C -0.13 -1.20 6.41 -24.89 -0.16 -1.36 16 9 C 0.10 1.25 4.87 -3.06 -0.01 1.24 16 10 N -0.62 -9.73 3.33 -175.88 -0.59 -10.31 16 11 C 0.58 11.92 7.81 -12.31 -0.10 11.83 16 12 O -0.55 -12.64 16.59 5.33 0.09 -12.55 16 13 C -0.11 -2.39 5.87 -105.04 -0.62 -3.01 16 14 C -0.19 -4.46 9.60 -38.92 -0.37 -4.83 16 15 C -0.11 -2.50 10.01 -39.72 -0.40 -2.90 16 16 C -0.18 -4.45 9.05 -38.81 -0.35 -4.80 16 17 C 0.09 2.27 5.73 -106.87 -0.61 1.65 16 18 C -0.46 -10.93 8.97 -37.73 -0.34 -11.27 16 19 H 0.08 1.83 8.04 -52.48 -0.42 1.41 16 20 C 0.08 1.91 5.08 -17.34 -0.09 1.82 16 21 N -0.76 -17.90 10.63 55.55 0.59 -17.31 16 22 Si 0.90 16.84 29.68 -169.99 -5.04 11.79 16 23 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 24 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 25 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 26 C -0.24 -5.16 8.36 -38.44 -0.32 -5.48 16 27 C 0.12 1.49 6.40 -2.52 -0.02 1.47 16 28 N -0.48 -5.74 11.55 -9.87 -0.11 -5.86 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.76 7.95 -51.93 -0.41 0.35 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.19 6.74 -51.93 -0.35 0.84 16 35 H 0.09 1.28 6.74 -51.93 -0.35 0.93 16 36 H 0.10 2.23 7.65 -52.49 -0.40 1.83 16 37 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.14 3.57 5.14 -52.49 -0.27 3.30 16 39 H 0.28 5.98 8.30 -40.82 -0.34 5.65 16 40 H 0.13 2.41 2.74 -58.02 -0.16 2.25 16 41 H 0.09 1.18 7.98 -51.93 -0.41 0.76 16 42 H 0.07 0.90 8.03 -51.93 -0.42 0.49 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -29.78 352.11 -8.75 -38.54 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.87 Total: 7.06 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -4.71 Total: -13.42 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.27 Total: -37.91 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.29 Total: -11.36 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.04 Total: 11.79 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.78 -8.75 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332081411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.594 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds