Wall clock time and date at job start Tue Mar 31 2020 15:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29943 * 126.28783 * 2 1 4 4 O 1.21299 * 110.24938 * 179.97438 * 3 2 1 5 5 C 1.33645 * 109.81245 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.54879 * 180.02562 * 5 4 3 7 7 H 1.08991 * 110.88682 * 177.55197 * 6 5 4 8 8 C 1.55158 * 111.00327 * 53.62861 * 6 5 4 9 9 C 1.54327 * 102.94286 * 206.42242 * 8 6 5 10 10 N 1.47022 * 107.27099 * 22.19392 * 9 8 6 11 11 C 1.34777 * 125.65055 * 181.09959 * 10 9 8 12 12 O 1.21543 * 120.00230 * 173.89968 * 11 10 9 13 13 C 1.47885 * 119.99754 * 353.89377 * 11 10 9 14 14 C 1.39918 * 120.02368 * 187.44229 * 13 11 10 15 15 C 1.38332 * 120.35760 * 179.78533 * 14 13 11 16 16 C 1.37759 * 120.41169 * 0.47320 * 15 14 13 17 17 C 1.40754 * 120.03630 * 359.78359 * 16 15 14 18 18 C 1.41435 * 120.17421 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00178 * 183.10502 * 18 17 16 20 20 C 1.39943 * 120.00326 * 3.10895 * 18 17 16 21 21 N 1.30821 * 119.99550 * 324.06876 * 20 18 17 22 22 Si 1.86792 * 120.00274 * 144.06605 * 20 18 17 23 23 H 1.48503 * 109.46983 * 94.99908 * 22 20 18 24 24 H 1.48499 * 109.47526 * 214.99978 * 22 20 18 25 25 H 1.48505 * 109.47214 * 334.99984 * 22 20 18 26 26 C 1.38994 * 120.02702 * 7.71489 * 13 11 10 27 27 C 1.47433 * 108.70337 * 1.05960 * 10 9 8 28 28 N 1.31129 * 106.89843 * 359.97438 * 5 4 3 29 29 H 1.09003 * 109.47324 * 270.00247 * 1 2 3 30 30 H 1.08992 * 109.46973 * 30.00375 * 1 2 3 31 31 H 1.08998 * 109.47081 * 150.00210 * 1 2 3 32 32 H 1.09005 * 110.72079 * 324.78538 * 8 6 5 33 33 H 1.08996 * 110.71851 * 88.05731 * 8 6 5 34 34 H 1.09004 * 109.88111 * 262.77852 * 9 8 6 35 35 H 1.09000 * 110.01299 * 141.68171 * 9 8 6 36 36 H 1.07998 * 119.82199 * 359.97438 * 14 13 11 37 37 H 1.08000 * 119.79416 * 180.20727 * 15 14 13 38 38 H 1.07998 * 119.98030 * 179.76425 * 16 15 14 39 39 H 0.96996 * 120.00126 * 179.97438 * 21 20 18 40 40 H 1.08003 * 120.19948 * 0.02562 * 26 13 11 41 41 H 1.08998 * 110.36773 * 217.03646 * 27 10 9 42 42 H 1.08993 * 110.36537 * 94.71223 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7123 0.0005 5 6 3.5298 -0.6213 0.0015 6 6 4.7969 -1.4371 0.0029 7 1 4.5729 -2.5028 0.0469 8 6 5.7287 -1.0151 1.1695 9 6 7.1309 -1.3899 0.6449 10 7 7.0469 -1.4484 -0.8217 11 6 8.0583 -1.7650 -1.6544 12 8 7.8486 -1.8906 -2.8450 13 6 9.4232 -1.9595 -1.1194 14 6 10.5003 -2.1337 -1.9954 15 6 11.7805 -2.3117 -1.5025 16 6 12.0086 -2.3293 -0.1441 17 6 10.9367 -2.1611 0.7526 18 6 11.1675 -2.1792 2.1478 19 1 10.3369 -2.1001 2.8337 20 6 12.4721 -2.2995 2.6399 21 7 13.3411 -3.0496 2.0125 22 14 12.9725 -1.3889 4.1921 23 1 12.8266 -2.2901 5.3634 24 1 14.3874 -0.9532 4.0761 25 1 12.1015 -0.1996 4.3710 26 6 9.6362 -1.9750 0.2540 27 6 5.6729 -1.1043 -1.2307 28 7 2.3030 -1.0842 0.0020 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 5.6587 0.0575 1.3504 33 1 5.4926 -1.5760 2.0738 34 1 7.4260 -2.3627 1.0384 35 1 7.8559 -0.6333 0.9448 36 1 10.3317 -2.1260 -3.0621 37 1 12.6057 -2.4420 -2.1869 38 1 13.0104 -2.4726 0.2331 39 1 14.2454 -3.1328 2.3533 40 1 8.8071 -1.8458 0.9339 41 1 5.3691 -1.7083 -2.0857 42 1 5.6030 -0.0435 -1.4707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332081411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:12 Heat of formation + Delta-G solvation = 60.251417 kcal Electronic energy + Delta-G solvation = -26770.355394 eV Core-core repulsion = 22911.593366 eV Total energy + Delta-G solvation = -3858.762028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.70115 -41.43530 -39.15162 -38.50218 -37.15431 -35.65265 -34.86613 -32.64355 -31.88518 -31.39195 -30.24398 -29.75392 -27.20070 -26.19926 -24.80826 -24.07573 -23.10549 -22.42052 -21.43690 -20.99542 -19.24352 -19.06242 -18.48705 -17.73468 -17.71743 -17.20440 -16.47877 -16.40985 -15.87543 -15.41722 -15.07994 -14.82044 -14.79858 -14.52497 -14.45896 -14.30098 -13.99069 -13.91788 -13.66153 -13.54692 -13.25478 -13.04769 -12.93326 -12.83769 -12.69915 -12.24916 -12.20863 -12.17484 -12.12595 -11.90266 -11.86587 -11.25255 -10.97729 -10.82677 -10.58928 -9.82258 -9.54486 -9.37496 -8.76093 -6.26351 -0.00843 0.42812 0.99673 1.10331 1.42717 1.52099 1.55193 1.63286 1.95023 2.09555 2.20468 2.59039 2.68983 3.01534 3.21568 3.37736 3.71829 3.78380 3.90448 4.05796 4.14482 4.18732 4.46052 4.48143 4.52072 4.58090 4.64069 4.67134 4.70052 4.78410 4.84643 4.91702 5.03439 5.06157 5.07453 5.09879 5.19506 5.31308 5.41614 5.60156 5.89050 6.06710 6.12908 6.23726 6.40401 6.66325 6.89347 7.02351 7.05908 7.14692 8.16052 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.002819 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.629908 B = 9931.858404 C =11311.728670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.164 3.836 3 N -0.408 5.408 4 O 0.071 5.929 5 C 0.207 3.793 6 C 0.000 4.000 7 H 0.147 0.853 8 C -0.114 4.114 9 C 0.089 3.911 10 N -0.611 5.611 11 C 0.580 3.420 12 O -0.586 6.586 13 C -0.114 4.114 14 C -0.218 4.218 15 C -0.108 4.108 16 C -0.216 4.216 17 C 0.066 3.934 18 C -0.480 4.480 19 H 0.095 0.905 20 C 0.044 3.956 21 N -0.790 5.790 22 Si 0.977 3.023 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.253 1.253 26 C -0.231 4.231 27 C 0.114 3.886 28 N -0.495 5.495 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.293 0.707 40 H 0.165 0.835 41 H 0.081 0.919 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.577 4.654 4.646 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 N -0.119 5.119 4 O 0.016 5.984 5 C -0.014 4.014 6 C -0.021 4.021 7 H 0.165 0.835 8 C -0.152 4.152 9 C -0.033 4.033 10 N -0.344 5.344 11 C 0.373 3.627 12 O -0.468 6.468 13 C -0.117 4.117 14 C -0.238 4.238 15 C -0.126 4.126 16 C -0.236 4.236 17 C 0.064 3.936 18 C -0.507 4.507 19 H 0.113 0.887 20 C -0.176 4.176 21 N -0.413 5.413 22 Si 0.797 3.203 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.176 1.176 26 C -0.250 4.250 27 C -0.010 4.010 28 N -0.229 5.229 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.144 0.856 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.149 0.851 39 H 0.105 0.895 40 H 0.181 0.819 41 H 0.100 0.900 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.047 4.962 3.979 19.135 hybrid contribution 1.002 0.099 -0.069 1.010 sum -17.044 5.062 3.910 18.205 Atomic orbital electron populations 1.20372 0.80236 1.05803 1.05716 1.26681 1.02212 0.82881 0.99050 1.74667 0.89613 1.24680 1.22918 1.85274 1.22394 1.24914 1.65857 1.28429 0.96359 0.81907 0.94661 1.20979 0.84521 0.99284 0.97296 0.83537 1.22950 0.90260 1.04498 0.97492 1.22782 0.98506 1.03457 0.78539 1.48156 1.09628 1.68527 1.08084 1.18388 0.84639 0.74990 0.84674 1.90647 1.84804 1.54133 1.17224 1.19446 0.91284 1.06167 0.94828 1.20516 0.92846 1.12911 0.97561 1.20861 0.95776 1.00342 0.95664 1.22246 1.01098 1.07733 0.92486 1.17947 0.91538 0.90023 0.94126 1.19873 0.94232 1.44585 0.92013 0.88691 1.26953 0.96143 0.92526 1.01930 1.69854 1.06743 1.25477 1.39276 0.85273 0.78276 0.79769 0.77022 1.18296 1.19637 1.17627 1.22664 0.98406 1.10259 0.93678 1.22224 0.80297 1.01622 0.96833 1.71950 0.99952 1.29900 1.21120 0.87611 0.88394 0.87866 0.88394 0.85627 0.88970 0.89208 0.88634 0.87360 0.85139 0.89518 0.81857 0.90013 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.51 71.24 0.75 0.05 16 2 C 0.16 3.31 8.22 138.46 1.14 4.45 16 3 N -0.41 -9.51 12.16 -60.33 -0.73 -10.24 16 4 O 0.07 1.59 11.22 74.82 0.84 2.43 16 5 C 0.21 4.17 7.12 88.38 0.63 4.80 16 6 C 0.00 0.00 3.58 -10.15 -0.04 -0.04 16 7 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 8 C -0.11 -1.72 6.41 31.78 0.20 -1.52 16 9 C 0.09 2.07 4.87 86.73 0.42 2.49 16 10 N -0.61 -18.58 3.33 -828.65 -2.76 -21.34 16 11 C 0.58 23.86 7.81 86.80 0.68 24.54 16 12 O -0.59 -27.37 16.59 -3.85 -0.06 -27.44 16 13 C -0.11 -5.18 5.87 -20.13 -0.12 -5.30 16 14 C -0.22 -10.48 9.60 22.70 0.22 -10.26 16 15 C -0.11 -5.20 10.01 22.18 0.22 -4.98 16 16 C -0.22 -11.06 9.05 22.77 0.21 -10.86 16 17 C 0.07 3.28 5.73 -21.32 -0.12 3.16 16 18 C -0.48 -22.71 8.97 23.47 0.21 -22.50 16 19 H 0.10 4.09 8.04 -2.91 -0.02 4.07 16 20 C 0.04 1.99 5.08 85.26 0.43 2.42 16 21 N -0.79 -37.35 10.63 21.83 0.23 -37.12 16 22 Si 0.98 33.52 29.68 68.60 2.04 35.55 16 23 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 24 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 25 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 26 C -0.23 -10.12 8.36 23.01 0.19 -9.93 16 27 C 0.11 2.73 6.40 86.85 0.56 3.28 16 28 N -0.50 -10.74 11.55 -303.21 -3.50 -14.25 16 29 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 1.36 7.95 -2.38 -0.02 1.34 16 33 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 2.20 6.74 -2.38 -0.02 2.18 16 35 H 0.09 2.25 6.74 -2.39 -0.02 2.24 16 36 H 0.10 4.53 7.65 -2.91 -0.02 4.51 16 37 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 38 H 0.13 6.87 5.14 -2.91 -0.01 6.86 16 39 H 0.29 12.36 8.30 -92.71 -0.77 11.59 16 40 H 0.16 5.84 2.74 -8.11 -0.02 5.82 16 41 H 0.08 2.12 7.98 -2.39 -0.02 2.10 16 42 H 0.08 1.85 8.03 -2.39 -0.02 1.83 16 Total: -1.00 -66.00 352.11 2.69 -63.31 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 1.06 Total: 29.26 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 5.58 Total: -20.17 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -6.76 Total: -82.94 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: 0.78 Total: -25.01 kcal Atomic # 14 Polarization: 33.52 SS G_CDS: 2.04 Total: 35.55 kcal Total: -66.00 2.69 -63.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332081411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.559 kcal (2) G-P(sol) polarization free energy of solvation -65.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds