Wall clock time and date at job start Tue Mar 31 2020 15:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29943 * 126.28620 * 2 1 4 4 O 1.21306 * 110.25187 * 180.02562 * 3 2 1 5 5 C 1.33648 * 109.80628 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.54738 * 179.97438 * 5 4 3 7 7 H 1.08995 * 110.88721 * 182.44774 * 6 5 4 8 8 C 1.55160 * 111.03731 * 306.35785 * 6 5 4 9 9 C 1.54325 * 102.94044 * 153.59044 * 8 6 5 10 10 N 1.47286 * 107.30704 * 337.81855 * 9 8 6 11 11 C 1.34782 * 125.79115 * 178.93084 * 10 9 8 12 12 O 1.21581 * 119.99606 * 174.85416 * 11 10 9 13 13 C 1.47645 * 119.99751 * 354.85010 * 11 10 9 14 14 C 1.40012 * 119.89694 * 7.97456 * 13 11 10 15 15 C 1.36316 * 120.10366 * 179.71829 * 14 13 11 16 16 C 1.40889 * 119.89404 * 0.57069 * 15 14 13 17 17 C 1.41106 * 120.10520 * 179.67602 * 16 15 14 18 18 H 1.07992 * 120.00281 * 214.82288 * 17 16 15 19 19 C 1.40230 * 119.99659 * 34.82542 * 17 16 15 20 20 N 1.30641 * 120.00284 * 355.51628 * 19 17 16 21 21 Si 1.86801 * 119.99542 * 175.51476 * 19 17 16 22 22 H 1.48505 * 109.47057 * 90.00213 * 21 19 17 23 23 H 1.48500 * 109.47119 * 209.99727 * 21 19 17 24 24 H 1.48494 * 109.47527 * 330.00192 * 21 19 17 25 25 C 1.40888 * 119.79245 * 359.70236 * 16 15 14 26 26 C 1.36318 * 119.89088 * 359.97438 * 25 16 15 27 27 C 1.47423 * 108.56013 * 358.92153 * 10 9 8 28 28 N 1.31127 * 106.89916 * 0.22429 * 5 4 3 29 29 H 1.09000 * 109.47698 * 89.97634 * 1 2 3 30 30 H 1.09008 * 109.47280 * 209.97592 * 1 2 3 31 31 H 1.09003 * 109.47078 * 329.97284 * 1 2 3 32 32 H 1.09003 * 110.71360 * 271.95095 * 8 6 5 33 33 H 1.08997 * 110.71917 * 35.04805 * 8 6 5 34 34 H 1.08999 * 109.88223 * 97.22293 * 9 8 6 35 35 H 1.09003 * 109.87635 * 218.38417 * 9 8 6 36 36 H 1.07998 * 119.94813 * 359.97438 * 14 13 11 37 37 H 1.08005 * 120.05388 * 180.29339 * 15 14 13 38 38 H 0.96998 * 120.00177 * 179.97438 * 20 19 17 39 39 H 1.07994 * 120.05659 * 180.02562 * 25 16 15 40 40 H 1.08003 * 119.95043 * 179.97438 * 26 25 16 41 41 H 1.08998 * 110.36791 * 265.26867 * 27 10 9 42 42 H 1.09000 * 110.36762 * 143.05217 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0015 6 6 4.7969 -1.4370 -0.0029 7 1 4.5728 -2.5028 -0.0469 8 6 5.7292 -1.0159 -1.1695 9 6 7.1309 -1.3913 -0.6444 10 7 7.0473 -1.4499 0.8249 11 6 8.0570 -1.7660 1.6599 12 8 7.8968 -1.6916 2.8628 13 6 9.3573 -2.2028 1.1138 14 6 9.5959 -2.1290 -0.2639 15 6 10.7970 -2.5257 -0.7720 16 6 11.7947 -3.0218 0.0901 17 6 13.0372 -3.4401 -0.4319 18 1 13.5568 -4.2751 0.0142 19 6 13.5972 -2.7715 -1.5300 20 7 12.9296 -1.8188 -2.1246 21 14 15.2977 -3.2430 -2.1425 22 1 15.1760 -4.3087 -3.1696 23 1 15.9564 -2.0534 -2.7393 24 1 16.1126 -3.7419 -1.0058 25 6 11.5479 -3.0996 1.4750 26 6 10.3461 -2.6943 1.9747 27 6 5.6728 -1.1044 1.2308 28 7 2.3030 -1.0841 -0.0064 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8903 0.5135 31 1 -0.3633 0.8898 0.5143 32 1 5.4929 -1.5771 -2.0736 33 1 5.6573 0.0561 -1.3528 34 1 7.4257 -2.3643 -1.0375 35 1 7.8544 -0.6333 -0.9446 36 1 8.8286 -1.7533 -0.9246 37 1 10.9818 -2.4640 -1.8343 38 1 13.3171 -1.3561 -2.8839 39 1 12.3098 -3.4788 2.1398 40 1 10.1557 -2.7538 3.0361 41 1 5.6034 -0.0433 1.4703 42 1 5.3672 -1.7065 2.0865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332098593.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:18 Heat of formation + Delta-G solvation = 74.864352 kcal Electronic energy + Delta-G solvation = -26561.321014 eV Core-core repulsion = 22703.192650 eV Total energy + Delta-G solvation = -3858.128364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.84293 -39.97849 -37.73854 -36.84675 -36.31501 -33.98848 -33.65779 -31.46537 -30.34380 -29.62205 -29.42889 -28.78611 -26.18441 -24.44534 -23.77585 -23.09544 -21.45431 -20.88590 -20.47411 -19.25367 -18.28991 -17.64673 -17.47350 -16.79293 -16.49552 -15.55408 -15.10796 -14.63392 -14.43524 -14.29185 -13.93475 -13.84498 -13.65312 -13.36558 -13.07658 -13.01383 -12.74760 -12.65549 -12.54416 -12.31567 -12.10397 -11.84396 -11.56990 -11.42671 -11.33353 -11.26474 -11.15227 -11.04920 -10.82990 -10.59235 -10.09467 -10.01242 -9.48856 -9.34542 -9.04974 -8.41604 -7.73152 -7.43187 -6.88409 -4.64197 0.85240 1.92821 2.15940 2.45770 2.92252 2.96828 2.99333 3.02152 3.16189 3.47893 3.73679 3.77342 3.83138 4.16299 4.30524 4.50832 4.59752 4.86698 4.99380 5.01615 5.07380 5.15079 5.26174 5.45436 5.47906 5.50388 5.58386 5.67462 5.70836 5.79151 5.83190 5.91649 6.09876 6.28382 6.52829 6.76084 6.87208 7.01555 7.13680 7.46683 7.57731 7.77845 7.87461 7.90143 8.01188 8.09519 8.43222 8.66189 8.75197 8.88352 10.00155 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026815 B = 0.002348 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.940352 B =11922.596190 C =12674.560755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.386 5.386 4 O 0.081 5.919 5 C 0.203 3.797 6 C -0.015 4.015 7 H 0.133 0.867 8 C -0.130 4.130 9 C 0.101 3.899 10 N -0.625 5.625 11 C 0.590 3.410 12 O -0.567 6.567 13 C -0.267 4.267 14 C -0.106 4.106 15 C -0.167 4.167 16 C 0.124 3.876 17 C -0.449 4.449 18 H 0.081 0.919 19 C 0.070 3.930 20 N -0.792 5.792 21 Si 0.919 3.081 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.261 1.261 25 C -0.227 4.227 26 C -0.031 4.031 27 C 0.120 3.880 28 N -0.481 5.481 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.283 0.717 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.234 2.214 -3.253 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.095 5.095 4 O 0.023 5.977 5 C -0.018 4.018 6 C -0.036 4.036 7 H 0.150 0.850 8 C -0.168 4.168 9 C -0.022 4.022 10 N -0.360 5.360 11 C 0.387 3.613 12 O -0.448 6.448 13 C -0.271 4.271 14 C -0.124 4.124 15 C -0.187 4.187 16 C 0.121 3.879 17 C -0.478 4.478 18 H 0.099 0.901 19 C -0.148 4.148 20 N -0.417 5.417 21 Si 0.743 3.257 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.185 1.185 25 C -0.246 4.246 26 C -0.050 4.050 27 C -0.005 4.005 28 N -0.215 5.215 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.862 2.917 -2.758 17.334 hybrid contribution 0.904 -0.051 -0.362 0.975 sum -15.958 2.866 -3.120 16.511 Atomic orbital electron populations 1.20140 0.82883 1.04711 1.04301 1.25932 1.00646 0.83538 1.00558 1.74665 0.89360 1.23894 1.21548 1.85300 1.22290 1.24625 1.65502 1.28356 0.96231 0.82071 0.95117 1.21068 0.85247 0.98641 0.98624 0.84957 1.22961 0.93523 1.03238 0.97113 1.22599 0.95674 1.02865 0.81068 1.48287 1.09500 1.71654 1.06608 1.18414 0.83073 0.75009 0.84781 1.90664 1.83095 1.56015 1.15016 1.18868 0.94348 1.19442 0.94484 1.21859 0.98326 0.98264 0.93935 1.21317 0.91745 1.04853 1.00742 1.17905 0.92065 0.87261 0.90638 1.19762 1.03271 1.13956 1.10811 0.90059 1.26035 1.00248 0.93736 0.94799 1.69663 1.37514 1.17343 1.17225 0.86118 0.80942 0.78978 0.79622 1.19207 1.20027 1.18452 1.20854 0.97326 1.11162 0.95301 1.20383 0.92372 0.94700 0.97574 1.22016 0.81825 1.01317 0.95310 1.71922 0.99579 1.29374 1.20594 0.89306 0.88977 0.89491 0.88678 0.89532 0.89358 0.89445 0.85636 0.85115 0.90575 0.88283 0.88112 0.91123 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.17 1.83 8.22 -156.38 -1.28 0.55 16 3 N -0.39 -4.80 12.16 30.90 0.38 -4.43 16 4 O 0.08 0.98 11.22 18.09 0.20 1.18 16 5 C 0.20 2.26 7.12 -13.06 -0.09 2.16 16 6 C -0.01 -0.15 3.57 -89.62 -0.32 -0.47 16 7 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 8 C -0.13 -1.15 6.41 -24.89 -0.16 -1.31 16 9 C 0.10 1.23 4.87 -2.92 -0.01 1.21 16 10 N -0.62 -9.79 3.34 -176.21 -0.59 -10.37 16 11 C 0.59 12.08 7.80 -12.42 -0.10 11.98 16 12 O -0.57 -13.17 16.65 5.29 0.09 -13.08 16 13 C -0.27 -5.86 5.89 -104.73 -0.62 -6.47 16 14 C -0.11 -2.20 8.53 -39.61 -0.34 -2.54 16 15 C -0.17 -3.94 8.61 -39.27 -0.34 -4.27 16 16 C 0.12 3.10 5.55 -106.80 -0.59 2.50 16 17 C -0.45 -11.03 9.03 -37.75 -0.34 -11.38 16 18 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 19 C 0.07 1.62 5.42 -17.31 -0.09 1.53 16 20 N -0.79 -18.76 10.59 55.56 0.59 -18.18 16 21 Si 0.92 17.42 29.56 -169.99 -5.03 12.39 16 22 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 25 C -0.23 -5.37 9.73 -39.27 -0.38 -5.75 16 26 C -0.03 -0.71 9.52 -39.61 -0.38 -1.09 16 27 C 0.12 1.53 6.34 -2.53 -0.02 1.52 16 28 N -0.48 -5.71 11.55 -9.87 -0.11 -5.82 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.73 7.95 -51.93 -0.41 0.32 16 34 H 0.09 1.08 6.68 -51.93 -0.35 0.73 16 35 H 0.09 1.11 6.79 -51.93 -0.35 0.75 16 36 H 0.13 2.13 2.73 -58.61 -0.16 1.97 16 37 H 0.13 3.14 6.13 -52.48 -0.32 2.82 16 38 H 0.28 6.09 8.29 -40.82 -0.34 5.75 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.10 2.24 7.65 -52.48 -0.40 1.83 16 41 H 0.07 0.90 8.03 -51.93 -0.42 0.48 16 42 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -30.06 352.49 -8.76 -38.82 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.92 Total: 6.04 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -4.69 Total: -11.86 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.26 Total: -38.80 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.29 Total: -11.90 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.06 -8.76 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332098593.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.684 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds