Wall clock time and date at job start Tue Mar 31 2020 15:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29943 * 126.28620 * 2 1 4 4 O 1.21306 * 110.25187 * 180.02562 * 3 2 1 5 5 C 1.33648 * 109.80628 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.54738 * 179.97438 * 5 4 3 7 7 H 1.08995 * 110.88721 * 182.44774 * 6 5 4 8 8 C 1.55160 * 111.03731 * 306.35785 * 6 5 4 9 9 C 1.54325 * 102.94044 * 153.59044 * 8 6 5 10 10 N 1.47286 * 107.30704 * 337.81855 * 9 8 6 11 11 C 1.34782 * 125.79115 * 178.93084 * 10 9 8 12 12 O 1.21581 * 119.99606 * 174.85416 * 11 10 9 13 13 C 1.47645 * 119.99751 * 354.85010 * 11 10 9 14 14 C 1.40012 * 119.89694 * 7.97456 * 13 11 10 15 15 C 1.36316 * 120.10366 * 179.71829 * 14 13 11 16 16 C 1.40889 * 119.89404 * 0.57069 * 15 14 13 17 17 C 1.41106 * 120.10520 * 179.67602 * 16 15 14 18 18 H 1.07992 * 120.00281 * 214.82288 * 17 16 15 19 19 C 1.40230 * 119.99659 * 34.82542 * 17 16 15 20 20 N 1.30641 * 120.00284 * 355.51628 * 19 17 16 21 21 Si 1.86801 * 119.99542 * 175.51476 * 19 17 16 22 22 H 1.48505 * 109.47057 * 90.00213 * 21 19 17 23 23 H 1.48500 * 109.47119 * 209.99727 * 21 19 17 24 24 H 1.48494 * 109.47527 * 330.00192 * 21 19 17 25 25 C 1.40888 * 119.79245 * 359.70236 * 16 15 14 26 26 C 1.36318 * 119.89088 * 359.97438 * 25 16 15 27 27 C 1.47423 * 108.56013 * 358.92153 * 10 9 8 28 28 N 1.31127 * 106.89916 * 0.22429 * 5 4 3 29 29 H 1.09000 * 109.47698 * 89.97634 * 1 2 3 30 30 H 1.09008 * 109.47280 * 209.97592 * 1 2 3 31 31 H 1.09003 * 109.47078 * 329.97284 * 1 2 3 32 32 H 1.09003 * 110.71360 * 271.95095 * 8 6 5 33 33 H 1.08997 * 110.71917 * 35.04805 * 8 6 5 34 34 H 1.08999 * 109.88223 * 97.22293 * 9 8 6 35 35 H 1.09003 * 109.87635 * 218.38417 * 9 8 6 36 36 H 1.07998 * 119.94813 * 359.97438 * 14 13 11 37 37 H 1.08005 * 120.05388 * 180.29339 * 15 14 13 38 38 H 0.96998 * 120.00177 * 179.97438 * 20 19 17 39 39 H 1.07994 * 120.05659 * 180.02562 * 25 16 15 40 40 H 1.08003 * 119.95043 * 179.97438 * 26 25 16 41 41 H 1.08998 * 110.36791 * 265.26867 * 27 10 9 42 42 H 1.09000 * 110.36762 * 143.05217 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0015 6 6 4.7969 -1.4370 -0.0029 7 1 4.5728 -2.5028 -0.0469 8 6 5.7292 -1.0159 -1.1695 9 6 7.1309 -1.3913 -0.6444 10 7 7.0473 -1.4499 0.8249 11 6 8.0570 -1.7660 1.6599 12 8 7.8968 -1.6916 2.8628 13 6 9.3573 -2.2028 1.1138 14 6 9.5959 -2.1290 -0.2639 15 6 10.7970 -2.5257 -0.7720 16 6 11.7947 -3.0218 0.0901 17 6 13.0372 -3.4401 -0.4319 18 1 13.5568 -4.2751 0.0142 19 6 13.5972 -2.7715 -1.5300 20 7 12.9296 -1.8188 -2.1246 21 14 15.2977 -3.2430 -2.1425 22 1 15.1760 -4.3087 -3.1696 23 1 15.9564 -2.0534 -2.7393 24 1 16.1126 -3.7419 -1.0058 25 6 11.5479 -3.0996 1.4750 26 6 10.3461 -2.6943 1.9747 27 6 5.6728 -1.1044 1.2308 28 7 2.3030 -1.0841 -0.0064 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8903 0.5135 31 1 -0.3633 0.8898 0.5143 32 1 5.4929 -1.5771 -2.0736 33 1 5.6573 0.0561 -1.3528 34 1 7.4257 -2.3643 -1.0375 35 1 7.8544 -0.6333 -0.9446 36 1 8.8286 -1.7533 -0.9246 37 1 10.9818 -2.4640 -1.8343 38 1 13.3171 -1.3561 -2.8839 39 1 12.3098 -3.4788 2.1398 40 1 10.1557 -2.7538 3.0361 41 1 5.6034 -0.0433 1.4703 42 1 5.3672 -1.7065 2.0865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332098593.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:17 Heat of formation + Delta-G solvation = 56.715794 kcal Electronic energy + Delta-G solvation = -26562.107994 eV Core-core repulsion = 22703.192650 eV Total energy + Delta-G solvation = -3858.915344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.70155 -41.34499 -39.23445 -38.42829 -37.15491 -35.61758 -34.80571 -32.68446 -31.72362 -31.34123 -30.27530 -29.85996 -27.82846 -25.70067 -24.75270 -24.07925 -23.05311 -22.45607 -21.41712 -20.72203 -19.30771 -19.13468 -18.58280 -18.02631 -17.69137 -17.20570 -16.64986 -15.91154 -15.75028 -15.37688 -14.97159 -14.81650 -14.70177 -14.54758 -14.46567 -14.18928 -14.10146 -13.91388 -13.60520 -13.53540 -13.28693 -13.21052 -12.99050 -12.82390 -12.63510 -12.36444 -12.29260 -12.19140 -12.17642 -11.88846 -11.72281 -11.18968 -11.05999 -10.95011 -10.66192 -9.76233 -9.51804 -9.22729 -8.61766 -6.48531 -0.00890 0.43071 1.10143 1.16759 1.42147 1.44092 1.55076 1.57200 2.03167 2.11960 2.21484 2.60286 2.82243 3.01569 3.24966 3.38356 3.66258 3.78229 4.04124 4.08352 4.14158 4.20472 4.45418 4.47263 4.50194 4.54229 4.57963 4.64046 4.68674 4.76385 4.84400 4.92496 4.98386 5.06100 5.09016 5.10667 5.17897 5.32692 5.37696 5.66931 5.83488 5.99914 6.06015 6.29202 6.50962 6.61955 6.84915 6.93883 7.05671 7.29548 8.29224 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026815 B = 0.002348 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.940352 B =11922.596190 C =12674.560755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.164 3.836 3 N -0.408 5.408 4 O 0.070 5.930 5 C 0.207 3.793 6 C 0.000 4.000 7 H 0.147 0.853 8 C -0.114 4.114 9 C 0.089 3.911 10 N -0.619 5.619 11 C 0.587 3.413 12 O -0.602 6.602 13 C -0.273 4.273 14 C -0.094 4.094 15 C -0.185 4.185 16 C 0.095 3.905 17 C -0.482 4.482 18 H 0.079 0.921 19 C 0.033 3.967 20 N -0.816 5.816 21 Si 0.989 3.011 22 H -0.258 1.258 23 H -0.268 1.268 24 H -0.263 1.263 25 C -0.241 4.241 26 C -0.044 4.044 27 C 0.116 3.884 28 N -0.495 5.495 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.167 0.833 37 H 0.125 0.875 38 H 0.292 0.708 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.729 2.439 -5.101 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 N -0.119 5.119 4 O 0.015 5.985 5 C -0.014 4.014 6 C -0.021 4.021 7 H 0.165 0.835 8 C -0.152 4.152 9 C -0.033 4.033 10 N -0.352 5.352 11 C 0.383 3.617 12 O -0.487 6.487 13 C -0.278 4.278 14 C -0.112 4.112 15 C -0.205 4.205 16 C 0.092 3.908 17 C -0.511 4.511 18 H 0.097 0.903 19 C -0.183 4.183 20 N -0.442 5.442 21 Si 0.810 3.190 22 H -0.182 1.182 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.260 4.260 26 C -0.063 4.063 27 C -0.008 4.008 28 N -0.229 5.229 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.184 0.816 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.388 3.151 -4.637 19.224 hybrid contribution 1.200 -0.075 0.258 1.230 sum -17.188 3.076 -4.379 18.001 Atomic orbital electron populations 1.20375 0.80217 1.05804 1.05728 1.26687 1.02226 0.82894 0.99035 1.74669 0.89615 1.24707 1.22950 1.85276 1.22396 1.24964 1.65884 1.28466 0.96412 0.81894 0.94598 1.20986 0.84481 0.99261 0.97347 0.83486 1.22939 0.90409 1.04412 0.97465 1.22793 0.98314 1.03324 0.78838 1.48175 1.09620 1.69502 1.07896 1.18160 0.83584 0.75286 0.84664 1.90639 1.83788 1.57693 1.16533 1.19178 0.95051 1.18595 0.94938 1.22288 0.98348 0.96491 0.94045 1.21356 0.92595 1.06170 1.00358 1.18264 0.92938 0.88244 0.91320 1.19980 1.03833 1.14887 1.12370 0.90268 1.26836 1.03786 0.93307 0.94373 1.69696 1.39107 1.17777 1.17605 0.85074 0.76039 0.78942 0.78946 1.18237 1.19211 1.18670 1.20968 0.97890 1.11827 0.95305 1.20535 0.92717 0.95119 0.97977 1.22134 0.80689 1.01319 0.96630 1.71946 0.99949 1.29892 1.21154 0.87585 0.87853 0.88409 0.85550 0.88568 0.88745 0.89368 0.81620 0.85745 0.89718 0.87907 0.88048 0.90910 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 71.24 0.75 0.06 16 2 C 0.16 3.30 8.22 138.46 1.14 4.43 16 3 N -0.41 -9.51 12.16 -60.30 -0.73 -10.25 16 4 O 0.07 1.57 11.22 74.78 0.84 2.41 16 5 C 0.21 4.14 7.12 88.38 0.63 4.77 16 6 C 0.00 0.00 3.57 -10.15 -0.04 -0.04 16 7 H 0.15 2.16 8.14 -2.39 -0.02 2.15 16 8 C -0.11 -1.61 6.41 31.78 0.20 -1.40 16 9 C 0.09 1.93 4.87 86.68 0.42 2.35 16 10 N -0.62 -18.49 3.34 -829.67 -2.77 -21.26 16 11 C 0.59 23.93 7.80 86.73 0.68 24.60 16 12 O -0.60 -28.33 16.65 -3.97 -0.07 -28.40 16 13 C -0.27 -12.04 5.89 -19.93 -0.12 -12.16 16 14 C -0.09 -3.88 8.53 22.25 0.19 -3.69 16 15 C -0.19 -8.83 8.61 22.47 0.19 -8.64 16 16 C 0.10 4.88 5.55 -21.28 -0.12 4.76 16 17 C -0.48 -24.30 9.03 23.46 0.21 -24.09 16 18 H 0.08 3.86 7.85 -2.91 -0.02 3.83 16 19 C 0.03 1.53 5.42 85.35 0.46 1.99 16 20 N -0.82 -38.75 10.59 21.87 0.23 -38.52 16 21 Si 0.99 35.41 29.56 68.60 2.03 37.44 16 22 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 23 H -0.27 -9.16 7.11 99.48 0.71 -8.46 16 24 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 25 C -0.24 -11.79 9.73 22.47 0.22 -11.57 16 26 C -0.04 -2.09 9.52 22.25 0.21 -1.88 16 27 C 0.12 2.80 6.34 86.86 0.55 3.35 16 28 N -0.50 -10.67 11.55 -303.18 -3.50 -14.17 16 29 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 1.26 7.95 -2.39 -0.02 1.24 16 34 H 0.09 2.02 6.68 -2.39 -0.02 2.00 16 35 H 0.09 1.98 6.79 -2.39 -0.02 1.97 16 36 H 0.17 5.32 2.73 -8.66 -0.02 5.29 16 37 H 0.12 6.04 6.13 -2.91 -0.02 6.02 16 38 H 0.29 12.42 8.29 -92.71 -0.77 11.65 16 39 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 40 H 0.10 4.67 7.65 -2.91 -0.02 4.65 16 41 H 0.07 1.76 8.03 -2.39 -0.02 1.74 16 42 H 0.08 2.03 8.09 -2.39 -0.02 2.02 16 Total: -1.00 -66.87 352.49 2.67 -64.20 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 1.06 Total: 25.70 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 5.59 Total: -17.15 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -6.77 Total: -84.20 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: 0.77 Total: -25.99 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Total: -66.87 2.67 -64.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332098593.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.917 kcal (2) G-P(sol) polarization free energy of solvation -66.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds