Wall clock time and date at job start Tue Mar 31 2020 15:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29938 * 126.29049 * 2 1 4 4 O 1.21294 * 110.25415 * 179.97438 * 3 2 1 5 5 C 1.33644 * 109.81407 * 359.97438 * 4 3 2 6 6 C 1.50696 * 126.55379 * 180.02562 * 5 4 3 7 7 H 1.09001 * 110.88511 * 180.65925 * 6 5 4 8 8 C 1.55151 * 111.00926 * 56.77313 * 6 5 4 9 9 C 1.54366 * 102.92360 * 206.45237 * 8 6 5 10 10 N 1.47022 * 107.28632 * 22.14059 * 9 8 6 11 11 C 1.34774 * 125.64933 * 181.12589 * 10 9 8 12 12 O 1.21594 * 120.00332 * 174.20304 * 11 10 9 13 13 C 1.47639 * 120.00066 * 354.20826 * 11 10 9 14 14 C 1.40015 * 119.89518 * 7.14633 * 13 11 10 15 15 C 1.36316 * 120.10458 * 179.72130 * 14 13 11 16 16 C 1.40881 * 119.89509 * 0.57756 * 15 14 13 17 17 C 1.41107 * 120.10779 * 179.67913 * 16 15 14 18 18 H 1.08003 * 119.99857 * 214.81532 * 17 16 15 19 19 C 1.40228 * 119.99964 * 34.80282 * 17 16 15 20 20 N 1.30638 * 119.99974 * 355.54939 * 19 17 16 21 21 Si 1.86806 * 119.99897 * 175.54347 * 19 17 16 22 22 H 1.48496 * 109.46976 * 90.00487 * 21 19 17 23 23 H 1.48503 * 109.46815 * 210.00509 * 21 19 17 24 24 H 1.48498 * 109.47021 * 330.00508 * 21 19 17 25 25 C 1.40890 * 119.79307 * 359.69633 * 16 15 14 26 26 C 1.36315 * 119.88893 * 0.02562 * 25 16 15 27 27 C 1.47425 * 108.70592 * 1.09116 * 10 9 8 28 28 N 1.31132 * 106.89110 * 0.02562 * 5 4 3 29 29 H 1.09003 * 109.47584 * 270.00718 * 1 2 3 30 30 H 1.09002 * 109.47003 * 30.00928 * 1 2 3 31 31 H 1.09000 * 109.47483 * 150.00392 * 1 2 3 32 32 H 1.09004 * 110.71880 * 324.79189 * 8 6 5 33 33 H 1.09003 * 110.71990 * 88.06014 * 8 6 5 34 34 H 1.08996 * 109.85019 * 262.72961 * 9 8 6 35 35 H 1.09002 * 109.90163 * 141.57162 * 9 8 6 36 36 H 1.07997 * 119.94478 * 0.02562 * 14 13 11 37 37 H 1.08009 * 120.05327 * 180.25722 * 15 14 13 38 38 H 0.97001 * 120.00482 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.05355 * 179.97438 * 25 16 15 40 40 H 1.08008 * 119.94408 * 179.97438 * 26 25 16 41 41 H 1.08997 * 110.36951 * 217.04034 * 27 10 9 42 42 H 1.08995 * 110.36762 * 94.71072 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0473 0.0000 4 8 3.4418 0.7123 0.0005 5 6 3.5298 -0.6213 0.0015 6 6 4.7969 -1.4371 0.0029 7 1 4.5723 -2.5036 -0.0083 8 6 5.6934 -1.0701 1.2148 9 6 7.1109 -1.4208 0.7144 10 7 7.0700 -1.4124 -0.7552 11 6 8.1055 -1.6912 -1.5715 12 8 7.9319 -1.7569 -2.7732 13 6 9.4507 -1.9172 -1.0067 14 6 9.6216 -1.9901 0.3811 15 6 10.8609 -2.2042 0.9070 16 6 11.9725 -2.3401 0.0523 17 6 13.2584 -2.5551 0.5922 18 1 14.1250 -2.1275 0.1099 19 6 13.4110 -3.3237 1.7551 20 7 12.3577 -3.7678 2.3874 21 14 15.1206 -3.7127 2.3999 22 1 15.5468 -2.6496 3.3451 23 1 15.0987 -5.0206 3.1029 24 1 16.0752 -3.7770 1.2642 25 6 11.7965 -2.2602 -1.3432 26 6 10.5525 -2.0515 -1.8601 27 6 5.7083 -1.0491 -1.1882 28 7 2.3029 -1.0841 0.0009 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3634 -0.8900 -0.5138 32 1 5.6172 -0.0069 1.4429 33 1 5.4310 -1.6720 2.0849 34 1 7.3952 -2.4106 1.0716 35 1 7.8244 -0.6772 1.0695 36 1 8.7695 -1.8814 1.0356 37 1 10.9911 -2.2644 1.9775 38 1 12.4632 -4.2998 3.1917 39 1 12.6458 -2.3634 -2.0023 40 1 10.4165 -1.9898 -2.9298 41 1 5.4300 -1.6134 -2.0782 42 1 5.6447 0.0217 -1.3815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332098594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:22 Heat of formation + Delta-G solvation = 75.427890 kcal Electronic energy + Delta-G solvation = -26565.291654 eV Core-core repulsion = 22707.187727 eV Total energy + Delta-G solvation = -3858.103927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.84461 -39.99589 -37.73863 -36.84473 -36.31431 -33.99534 -33.65990 -31.47017 -30.34490 -29.62491 -29.43221 -28.77886 -26.18184 -24.43859 -23.79278 -23.09018 -21.45832 -20.88540 -20.47600 -19.25542 -18.29029 -17.64768 -17.47280 -16.80331 -16.49351 -15.54761 -15.06263 -14.59755 -14.53040 -14.29962 -13.93440 -13.83772 -13.64729 -13.36520 -13.11888 -12.99063 -12.71447 -12.62621 -12.53408 -12.34459 -12.13236 -11.83550 -11.57284 -11.42267 -11.33293 -11.26546 -11.12056 -11.08719 -10.81271 -10.59481 -10.09148 -10.01028 -9.48662 -9.34346 -9.04678 -8.40969 -7.73109 -7.43213 -6.88504 -4.64215 0.85437 1.93002 2.15764 2.46091 2.92249 2.96739 2.99424 3.02125 3.16415 3.47935 3.73706 3.77460 3.83222 4.16398 4.30642 4.51210 4.59519 4.86902 4.99506 5.01686 5.07237 5.15088 5.26305 5.46184 5.48282 5.50246 5.58433 5.67325 5.70527 5.80770 5.83263 5.91767 6.09732 6.28424 6.53298 6.76089 6.87154 7.01622 7.13678 7.46720 7.57755 7.77824 7.87494 7.90312 8.01263 8.09534 8.43215 8.66173 8.75225 8.88321 10.00056 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026681 B = 0.002351 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.168853 B =11908.448073 C =12663.123672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.386 5.386 4 O 0.081 5.919 5 C 0.203 3.797 6 C -0.015 4.015 7 H 0.132 0.868 8 C -0.129 4.129 9 C 0.100 3.900 10 N -0.625 5.625 11 C 0.590 3.410 12 O -0.567 6.567 13 C -0.267 4.267 14 C -0.107 4.107 15 C -0.167 4.167 16 C 0.124 3.876 17 C -0.449 4.449 18 H 0.081 0.919 19 C 0.070 3.930 20 N -0.792 5.792 21 Si 0.919 3.081 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.261 1.261 25 C -0.227 4.227 26 C -0.031 4.031 27 C 0.119 3.881 28 N -0.481 5.481 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.283 0.717 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.786 4.062 2.860 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.095 5.095 4 O 0.023 5.977 5 C -0.018 4.018 6 C -0.036 4.036 7 H 0.150 0.850 8 C -0.168 4.168 9 C -0.022 4.022 10 N -0.360 5.360 11 C 0.387 3.613 12 O -0.448 6.448 13 C -0.272 4.272 14 C -0.125 4.125 15 C -0.187 4.187 16 C 0.121 3.879 17 C -0.478 4.478 18 H 0.099 0.901 19 C -0.148 4.148 20 N -0.418 5.418 21 Si 0.743 3.257 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.185 1.185 25 C -0.246 4.246 26 C -0.050 4.050 27 C -0.006 4.006 28 N -0.215 5.215 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.510 4.376 2.373 17.244 hybrid contribution 0.815 -0.369 0.394 0.977 sum -15.695 4.007 2.767 16.433 Atomic orbital electron populations 1.20139 0.82887 1.04708 1.04303 1.25930 1.00645 0.83538 1.00562 1.74657 0.89364 1.23892 1.21560 1.85295 1.22290 1.24626 1.65506 1.28361 0.96234 0.82066 0.95103 1.21076 0.85238 0.98644 0.98669 0.84992 1.22972 0.93712 1.03473 0.96639 1.22567 0.95638 1.02862 0.81165 1.48213 1.09454 1.71950 1.06399 1.18418 0.83596 0.74350 0.84922 1.90665 1.84790 1.54274 1.15102 1.18867 0.90861 1.23361 0.94067 1.21892 0.98662 0.98092 0.93828 1.21315 0.91772 1.04837 1.00728 1.17905 0.93772 0.85386 0.90803 1.19765 0.94021 1.27044 1.06964 0.90060 1.26034 0.99195 0.94356 0.95224 1.69663 1.30889 1.26173 1.15029 0.86118 0.81468 0.78534 0.79545 1.19208 1.20021 1.18451 1.20856 0.95692 1.12829 0.95270 1.20384 0.92028 0.94945 0.97661 1.22042 0.81775 1.00923 0.95841 1.71924 0.99584 1.29375 1.20603 0.89303 0.89493 0.88982 0.89536 0.88677 0.89489 0.89321 0.85547 0.85121 0.90580 0.88283 0.88107 0.89447 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.00 0.38 -0.04 16 2 C 0.17 1.83 8.22 -156.38 -1.28 0.55 16 3 N -0.39 -4.79 12.16 30.89 0.38 -4.41 16 4 O 0.08 0.97 11.23 18.10 0.20 1.18 16 5 C 0.20 2.26 7.12 -13.06 -0.09 2.17 16 6 C -0.02 -0.15 3.57 -89.63 -0.32 -0.47 16 7 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 8 C -0.13 -1.15 6.41 -24.88 -0.16 -1.31 16 9 C 0.10 1.23 4.86 -3.04 -0.01 1.21 16 10 N -0.62 -9.77 3.33 -177.69 -0.59 -10.36 16 11 C 0.59 12.07 7.80 -12.42 -0.10 11.97 16 12 O -0.57 -13.15 16.58 5.28 0.09 -13.06 16 13 C -0.27 -5.86 5.89 -104.73 -0.62 -6.48 16 14 C -0.11 -2.22 8.53 -39.61 -0.34 -2.56 16 15 C -0.17 -3.94 8.61 -39.27 -0.34 -4.27 16 16 C 0.12 3.10 5.55 -106.81 -0.59 2.51 16 17 C -0.45 -11.04 9.03 -37.75 -0.34 -11.38 16 18 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 19 C 0.07 1.63 5.42 -17.31 -0.09 1.53 16 20 N -0.79 -18.73 10.59 55.56 0.59 -18.14 16 21 Si 0.92 17.41 29.56 -169.99 -5.03 12.38 16 22 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 23 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 24 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 25 C -0.23 -5.37 9.73 -39.27 -0.38 -5.76 16 26 C -0.03 -0.71 9.52 -39.61 -0.38 -1.09 16 27 C 0.12 1.51 6.39 -2.53 -0.02 1.50 16 28 N -0.48 -5.73 11.55 -9.88 -0.11 -5.84 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.72 8.02 -51.93 -0.42 0.31 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.08 6.73 -51.93 -0.35 0.73 16 35 H 0.09 1.11 6.73 -51.93 -0.35 0.76 16 36 H 0.13 2.15 2.70 -60.24 -0.16 1.98 16 37 H 0.13 3.14 6.13 -52.48 -0.32 2.82 16 38 H 0.28 6.07 8.29 -40.82 -0.34 5.73 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.10 2.24 7.65 -52.48 -0.40 1.84 16 41 H 0.09 1.19 7.98 -51.93 -0.41 0.77 16 42 H 0.07 0.89 7.98 -51.93 -0.41 0.48 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -30.01 352.33 -8.77 -38.78 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.91 Total: 6.11 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -4.69 Total: -11.93 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.26 Total: -38.76 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.29 Total: -11.89 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.01 -8.77 -38.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332098594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.203 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds