Wall clock time and date at job start Tue Mar 31 2020 15:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29938 * 126.29049 * 2 1 4 4 O 1.21294 * 110.25415 * 179.97438 * 3 2 1 5 5 C 1.33644 * 109.81407 * 359.97438 * 4 3 2 6 6 C 1.50696 * 126.55379 * 180.02562 * 5 4 3 7 7 H 1.09001 * 110.88511 * 180.65925 * 6 5 4 8 8 C 1.55151 * 111.00926 * 56.77313 * 6 5 4 9 9 C 1.54366 * 102.92360 * 206.45237 * 8 6 5 10 10 N 1.47022 * 107.28632 * 22.14059 * 9 8 6 11 11 C 1.34774 * 125.64933 * 181.12589 * 10 9 8 12 12 O 1.21594 * 120.00332 * 174.20304 * 11 10 9 13 13 C 1.47639 * 120.00066 * 354.20826 * 11 10 9 14 14 C 1.40015 * 119.89518 * 7.14633 * 13 11 10 15 15 C 1.36316 * 120.10458 * 179.72130 * 14 13 11 16 16 C 1.40881 * 119.89509 * 0.57756 * 15 14 13 17 17 C 1.41107 * 120.10779 * 179.67913 * 16 15 14 18 18 H 1.08003 * 119.99857 * 214.81532 * 17 16 15 19 19 C 1.40228 * 119.99964 * 34.80282 * 17 16 15 20 20 N 1.30638 * 119.99974 * 355.54939 * 19 17 16 21 21 Si 1.86806 * 119.99897 * 175.54347 * 19 17 16 22 22 H 1.48496 * 109.46976 * 90.00487 * 21 19 17 23 23 H 1.48503 * 109.46815 * 210.00509 * 21 19 17 24 24 H 1.48498 * 109.47021 * 330.00508 * 21 19 17 25 25 C 1.40890 * 119.79307 * 359.69633 * 16 15 14 26 26 C 1.36315 * 119.88893 * 0.02562 * 25 16 15 27 27 C 1.47425 * 108.70592 * 1.09116 * 10 9 8 28 28 N 1.31132 * 106.89110 * 0.02562 * 5 4 3 29 29 H 1.09003 * 109.47584 * 270.00718 * 1 2 3 30 30 H 1.09002 * 109.47003 * 30.00928 * 1 2 3 31 31 H 1.09000 * 109.47483 * 150.00392 * 1 2 3 32 32 H 1.09004 * 110.71880 * 324.79189 * 8 6 5 33 33 H 1.09003 * 110.71990 * 88.06014 * 8 6 5 34 34 H 1.08996 * 109.85019 * 262.72961 * 9 8 6 35 35 H 1.09002 * 109.90163 * 141.57162 * 9 8 6 36 36 H 1.07997 * 119.94478 * 0.02562 * 14 13 11 37 37 H 1.08009 * 120.05327 * 180.25722 * 15 14 13 38 38 H 0.97001 * 120.00482 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.05355 * 179.97438 * 25 16 15 40 40 H 1.08008 * 119.94408 * 179.97438 * 26 25 16 41 41 H 1.08997 * 110.36951 * 217.04034 * 27 10 9 42 42 H 1.08995 * 110.36762 * 94.71072 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0473 0.0000 4 8 3.4418 0.7123 0.0005 5 6 3.5298 -0.6213 0.0015 6 6 4.7969 -1.4371 0.0029 7 1 4.5723 -2.5036 -0.0083 8 6 5.6934 -1.0701 1.2148 9 6 7.1109 -1.4208 0.7144 10 7 7.0700 -1.4124 -0.7552 11 6 8.1055 -1.6912 -1.5715 12 8 7.9319 -1.7569 -2.7732 13 6 9.4507 -1.9172 -1.0067 14 6 9.6216 -1.9901 0.3811 15 6 10.8609 -2.2042 0.9070 16 6 11.9725 -2.3401 0.0523 17 6 13.2584 -2.5551 0.5922 18 1 14.1250 -2.1275 0.1099 19 6 13.4110 -3.3237 1.7551 20 7 12.3577 -3.7678 2.3874 21 14 15.1206 -3.7127 2.3999 22 1 15.5468 -2.6496 3.3451 23 1 15.0987 -5.0206 3.1029 24 1 16.0752 -3.7770 1.2642 25 6 11.7965 -2.2602 -1.3432 26 6 10.5525 -2.0515 -1.8601 27 6 5.7083 -1.0491 -1.1882 28 7 2.3029 -1.0841 0.0009 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3634 -0.8900 -0.5138 32 1 5.6172 -0.0069 1.4429 33 1 5.4310 -1.6720 2.0849 34 1 7.3952 -2.4106 1.0716 35 1 7.8244 -0.6772 1.0695 36 1 8.7695 -1.8814 1.0356 37 1 10.9911 -2.2644 1.9775 38 1 12.4632 -4.2998 3.1917 39 1 12.6458 -2.3634 -2.0023 40 1 10.4165 -1.9898 -2.9298 41 1 5.4300 -1.6134 -2.0782 42 1 5.6447 0.0217 -1.3815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332098594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:21 Heat of formation + Delta-G solvation = 57.327637 kcal Electronic energy + Delta-G solvation = -26566.076540 eV Core-core repulsion = 22707.187727 eV Total energy + Delta-G solvation = -3858.888813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.70292 -41.36031 -39.23771 -38.42600 -37.15444 -35.61975 -34.81288 -32.68890 -31.72299 -31.34201 -30.28607 -29.85064 -27.82634 -25.69610 -24.76618 -24.07670 -23.05734 -22.45246 -21.42319 -20.72356 -19.30807 -19.13431 -18.57946 -18.05404 -17.68989 -17.19779 -16.58610 -15.92140 -15.79062 -15.39781 -14.99837 -14.80951 -14.70553 -14.52849 -14.45843 -14.21666 -14.00810 -13.92501 -13.64216 -13.53936 -13.27402 -13.21212 -13.01368 -12.82518 -12.62286 -12.38623 -12.28316 -12.19355 -12.16933 -11.88529 -11.72084 -11.18858 -11.06170 -10.94193 -10.65615 -9.75514 -9.51897 -9.22774 -8.61771 -6.48577 -0.00621 0.42913 1.10354 1.16716 1.42162 1.44099 1.55049 1.57607 2.02474 2.12247 2.21555 2.60432 2.82206 3.01502 3.25125 3.38557 3.66248 3.78300 4.05270 4.08013 4.14607 4.18463 4.45863 4.47333 4.50298 4.54738 4.57979 4.64306 4.67880 4.77492 4.84629 4.92440 4.98502 5.05757 5.09057 5.10291 5.17830 5.32887 5.37852 5.66815 5.83435 5.99779 6.05922 6.29117 6.51106 6.61861 6.84831 6.93815 7.05877 7.29624 8.29258 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026681 B = 0.002351 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.168853 B =11908.448073 C =12663.123672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.164 3.836 3 N -0.408 5.408 4 O 0.070 5.930 5 C 0.207 3.793 6 C -0.001 4.001 7 H 0.145 0.855 8 C -0.113 4.113 9 C 0.088 3.912 10 N -0.619 5.619 11 C 0.587 3.413 12 O -0.602 6.602 13 C -0.274 4.274 14 C -0.095 4.095 15 C -0.185 4.185 16 C 0.095 3.905 17 C -0.482 4.482 18 H 0.079 0.921 19 C 0.033 3.967 20 N -0.816 5.816 21 Si 0.989 3.011 22 H -0.259 1.259 23 H -0.267 1.267 24 H -0.263 1.263 25 C -0.241 4.241 26 C -0.044 4.044 27 C 0.115 3.885 28 N -0.496 5.496 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.169 0.831 37 H 0.125 0.875 38 H 0.292 0.708 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.430 3.931 4.706 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 N -0.119 5.119 4 O 0.015 5.985 5 C -0.013 4.013 6 C -0.022 4.022 7 H 0.163 0.837 8 C -0.152 4.152 9 C -0.033 4.033 10 N -0.351 5.351 11 C 0.383 3.617 12 O -0.486 6.486 13 C -0.278 4.278 14 C -0.113 4.113 15 C -0.205 4.205 16 C 0.092 3.908 17 C -0.511 4.511 18 H 0.097 0.903 19 C -0.183 4.183 20 N -0.441 5.441 21 Si 0.810 3.190 22 H -0.183 1.183 23 H -0.191 1.191 24 H -0.187 1.187 25 C -0.260 4.260 26 C -0.064 4.064 27 C -0.009 4.009 28 N -0.230 5.230 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.143 0.857 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.185 0.815 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.183 4.261 4.248 19.153 hybrid contribution 1.156 -0.290 -0.227 1.213 sum -17.027 3.971 4.022 17.941 Atomic orbital electron populations 1.20373 0.80226 1.05800 1.05725 1.26683 1.02222 0.82889 0.99052 1.74661 0.89616 1.24688 1.22943 1.85272 1.22393 1.24936 1.65877 1.28458 0.96393 0.81901 0.94592 1.20989 0.84431 0.99122 0.97630 0.83679 1.22949 0.90572 1.04822 0.96811 1.22757 0.98354 1.03271 0.78930 1.48101 1.09501 1.69821 1.07726 1.18159 0.84128 0.74642 0.84768 1.90640 1.85428 1.55989 1.16586 1.19182 0.91666 1.22397 0.94566 1.22330 0.99157 0.95850 0.93922 1.21355 0.92577 1.06226 1.00340 1.18264 0.94781 0.86245 0.91481 1.19981 0.93963 1.28668 1.08491 0.90316 1.26831 1.03049 0.93572 0.94836 1.69693 1.32668 1.26301 1.15447 0.85076 0.76491 0.78673 0.78771 1.18300 1.19123 1.18692 1.20970 0.96234 1.13545 0.95271 1.20536 0.92427 0.95343 0.98049 1.22163 0.80711 1.01098 0.96887 1.71948 0.99963 1.29911 1.21179 0.87589 0.88395 0.87877 0.88453 0.85651 0.88988 0.89145 0.81492 0.85743 0.89692 0.87926 0.88058 0.90413 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 71.24 0.75 0.06 16 2 C 0.16 3.29 8.22 138.46 1.14 4.43 16 3 N -0.41 -9.47 12.16 -60.35 -0.73 -10.20 16 4 O 0.07 1.57 11.23 74.83 0.84 2.41 16 5 C 0.21 4.14 7.12 88.38 0.63 4.77 16 6 C 0.00 -0.02 3.57 -10.15 -0.04 -0.05 16 7 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 8 C -0.11 -1.60 6.41 31.80 0.20 -1.40 16 9 C 0.09 1.92 4.86 86.74 0.42 2.34 16 10 N -0.62 -18.45 3.33 -834.35 -2.78 -21.23 16 11 C 0.59 23.90 7.80 86.73 0.68 24.58 16 12 O -0.60 -28.26 16.58 -4.01 -0.07 -28.33 16 13 C -0.27 -12.08 5.89 -19.93 -0.12 -12.20 16 14 C -0.10 -3.92 8.53 22.25 0.19 -3.73 16 15 C -0.19 -8.85 8.61 22.47 0.19 -8.65 16 16 C 0.10 4.89 5.55 -21.28 -0.12 4.77 16 17 C -0.48 -24.36 9.03 23.46 0.21 -24.15 16 18 H 0.08 3.85 7.85 -2.91 -0.02 3.82 16 19 C 0.03 1.54 5.42 85.35 0.46 2.00 16 20 N -0.82 -38.59 10.59 21.87 0.23 -38.36 16 21 Si 0.99 35.39 29.56 68.60 2.03 37.42 16 22 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 23 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 24 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 25 C -0.24 -11.83 9.73 22.47 0.22 -11.62 16 26 C -0.04 -2.10 9.52 22.25 0.21 -1.89 16 27 C 0.12 2.76 6.39 86.86 0.56 3.32 16 28 N -0.50 -10.71 11.55 -303.24 -3.50 -14.21 16 29 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 1.26 8.02 -2.38 -0.02 1.24 16 33 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.99 6.73 -2.39 -0.02 1.97 16 35 H 0.09 2.02 6.73 -2.39 -0.02 2.00 16 36 H 0.17 5.35 2.70 -10.20 -0.03 5.32 16 37 H 0.12 6.05 6.13 -2.91 -0.02 6.03 16 38 H 0.29 12.37 8.29 -92.71 -0.77 11.60 16 39 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 40 H 0.10 4.68 7.65 -2.91 -0.02 4.66 16 41 H 0.08 2.05 7.98 -2.39 -0.02 2.03 16 42 H 0.08 1.80 7.98 -2.39 -0.02 1.78 16 Total: -1.00 -66.75 352.33 2.66 -64.09 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 1.05 Total: 25.81 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 5.59 Total: -17.40 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -6.78 Total: -84.00 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: 0.77 Total: -25.91 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Total: -66.75 2.66 -64.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332098594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.416 kcal (2) G-P(sol) polarization free energy of solvation -66.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds