Wall clock time and date at job start Tue Mar 31 2020 16:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47168 * 2 1 4 4 C 1.38671 * 120.79221 * 269.98397 * 3 2 1 5 5 C 1.38176 * 119.16439 * 180.02562 * 4 3 2 6 6 N 1.31880 * 120.76640 * 0.02562 * 5 4 3 7 7 C 1.31859 * 121.72659 * 359.67913 * 6 5 4 8 8 C 1.50698 * 119.62399 * 180.29293 * 7 6 5 9 9 N 1.46505 * 109.47017 * 275.29225 * 8 7 6 10 10 S 1.65596 * 119.99814 * 164.32905 * 9 8 7 11 11 O 1.42099 * 106.39867 * 179.13760 * 10 9 8 12 12 O 1.42101 * 106.40483 * 312.05027 * 10 9 8 13 13 N 1.65591 * 107.22034 * 65.59713 * 10 9 8 14 14 C 1.46496 * 120.00242 * 90.01466 * 13 10 9 15 15 C 1.52999 * 109.47359 * 94.06075 * 14 13 10 16 16 C 1.46503 * 119.99652 * 270.00880 * 13 10 9 17 17 C 1.50700 * 109.47132 * 100.93509 * 16 13 10 18 18 H 1.08001 * 119.99569 * 3.24803 * 17 16 13 19 19 C 1.37878 * 120.00451 * 183.25587 * 17 16 13 20 20 N 1.31509 * 119.99492 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00222 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46993 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47066 * 119.99700 * 21 19 17 24 24 H 1.48502 * 109.47331 * 239.99900 * 21 19 17 25 25 C 1.38231 * 120.76032 * 0.58508 * 7 6 5 26 26 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46959 * 299.99704 * 1 2 3 28 28 H 1.08999 * 109.47282 * 59.99574 * 1 2 3 29 29 H 1.09005 * 109.46871 * 240.00721 * 2 1 3 30 30 H 1.08999 * 109.47282 * 120.00426 * 2 1 3 31 31 H 1.08003 * 120.41490 * 0.04052 * 4 3 2 32 32 H 1.08000 * 119.61650 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46847 * 35.28489 * 8 7 6 34 34 H 1.08997 * 109.47601 * 155.28678 * 8 7 6 35 35 H 0.96996 * 119.99736 * 344.32511 * 9 8 7 36 36 H 1.09009 * 109.47088 * 214.06043 * 14 13 10 37 37 H 1.08998 * 109.47041 * 334.05773 * 14 13 10 38 38 H 1.08997 * 109.47303 * 305.05310 * 15 14 13 39 39 H 1.08999 * 109.47232 * 65.05361 * 15 14 13 40 40 H 1.09003 * 109.46829 * 185.05394 * 15 14 13 41 41 H 1.09000 * 109.47203 * 220.92943 * 16 13 10 42 42 H 1.08997 * 109.47689 * 340.93509 * 16 13 10 43 43 H 0.97000 * 119.99690 * 180.02562 * 20 19 17 44 44 H 1.07993 * 120.41811 * 179.72709 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2693 2.0900 -1.1912 5 6 2.7302 3.3921 -1.1520 6 7 2.9449 3.9972 -0.0001 7 6 2.7252 3.3940 1.1517 8 6 2.9805 4.1328 2.4401 9 7 4.3962 4.0152 2.7982 10 16 5.0501 5.0284 3.9332 11 8 6.4138 4.6527 4.0682 12 8 4.6369 6.3424 3.5838 13 7 4.3233 4.6786 5.3793 14 6 4.9039 3.6665 6.2651 15 6 5.8212 4.3461 7.2838 16 6 3.0996 5.3814 5.7730 17 6 1.9071 4.4970 5.5146 18 1 2.0501 3.4912 5.1482 19 6 0.6335 4.9718 5.7458 20 7 0.4594 6.1965 6.1924 21 14 -0.8447 3.8757 5.4248 22 1 -0.3826 2.5543 4.9291 23 1 -1.6082 3.6928 6.6852 24 1 -1.7182 4.5089 4.4044 25 6 2.2691 2.0897 1.1909 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0955 1.5997 -2.1377 32 1 2.9176 3.9200 -2.0753 33 1 2.7241 5.1846 2.3128 34 1 2.3683 3.7030 3.2329 35 1 4.9505 3.3439 2.3704 36 1 4.1054 3.1410 6.7890 37 1 5.4809 2.9549 5.6746 38 1 6.5661 4.9447 6.7595 39 1 5.2287 4.9906 7.9331 40 1 6.3223 3.5871 7.8846 41 1 3.1468 5.6267 6.8340 42 1 3.0043 6.2986 5.1919 43 1 -0.4366 6.5305 6.3554 44 1 2.0952 1.5995 2.1374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337199952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:38 Heat of formation + Delta-G solvation = -56.876984 kcal Electronic energy + Delta-G solvation = -26693.629291 eV Core-core repulsion = 22965.232146 eV Total energy + Delta-G solvation = -3728.397145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.33127 -36.63505 -36.04766 -35.54202 -35.15609 -34.53185 -32.74002 -31.05699 -30.42026 -29.92448 -26.68391 -25.98666 -24.42911 -23.16162 -22.83378 -21.69175 -20.68400 -18.81610 -17.21098 -16.92059 -16.69192 -16.50995 -16.21896 -15.75074 -15.31130 -14.94579 -14.37009 -14.24517 -14.05365 -13.84551 -13.54938 -13.30232 -13.05721 -12.90182 -12.61530 -12.56370 -12.06571 -12.03209 -11.88627 -11.67741 -11.65953 -11.44207 -11.35849 -11.28335 -11.09362 -11.02749 -10.96104 -10.52635 -10.38800 -10.03971 -9.81368 -9.55019 -9.35667 -9.05485 -8.98858 -8.54308 -8.05555 -6.15102 -4.21976 0.99760 1.24530 1.42771 3.20024 3.27537 3.29600 3.52245 3.87449 4.21795 4.30904 4.35984 4.44365 4.59376 4.98911 5.01495 5.09397 5.12286 5.18632 5.19303 5.27388 5.44264 5.51727 5.61559 5.68606 5.74476 5.76997 5.82243 5.87430 5.97095 6.00006 6.13394 6.26251 6.29620 6.35337 6.39655 6.68623 6.71532 6.73661 7.28714 7.37904 7.45772 7.68267 7.82444 8.07728 8.12502 8.82496 9.43543 10.92741 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009705 B = 0.005279 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.443549 B = 5302.931427 C = 6989.068217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.043 4.043 4 C -0.176 4.176 5 C 0.099 3.901 6 N -0.472 5.472 7 C 0.131 3.869 8 C 0.166 3.834 9 N -1.123 6.123 10 S 2.787 3.213 11 O -0.999 6.999 12 O -0.977 6.977 13 N -0.992 5.992 14 C 0.131 3.869 15 C -0.169 4.169 16 C 0.242 3.758 17 C -0.541 4.541 18 H 0.065 0.935 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.888 3.112 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.282 1.282 25 C -0.155 4.155 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.154 0.846 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.035 0.965 42 H 0.055 0.945 43 H 0.264 0.736 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.766 -12.095 -10.139 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.051 4.051 4 C -0.196 4.196 5 C -0.058 4.058 6 N -0.182 5.182 7 C -0.008 4.008 8 C 0.040 3.960 9 N -0.881 5.881 10 S 2.795 3.205 11 O -0.984 6.984 12 O -0.960 6.960 13 N -0.834 5.834 14 C 0.005 3.995 15 C -0.229 4.229 16 C 0.120 3.880 17 C -0.580 4.580 18 H 0.083 0.917 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.715 3.285 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.208 1.208 25 C -0.175 4.175 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.149 0.851 32 H 0.171 0.829 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.238 0.762 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.462 -10.253 -10.120 14.816 hybrid contribution -1.407 -2.005 -0.334 2.472 sum 2.055 -12.258 -10.454 16.241 Atomic orbital electron populations 1.21752 0.94213 1.01997 1.02609 1.20573 0.96567 0.91876 1.03253 1.20323 0.95322 0.96450 0.92987 1.22000 1.02572 0.96589 0.98451 1.22757 0.94886 0.92022 0.96166 1.67577 1.14649 1.37951 0.98032 1.21420 0.94167 0.91394 0.93797 1.20365 0.81816 1.02083 0.91748 1.55932 1.18644 1.54561 1.58931 1.01717 0.72381 0.73630 0.72817 1.93544 1.33487 1.84588 1.86743 1.93583 1.83225 1.36311 1.82898 1.57744 1.40397 1.51738 1.33473 1.20958 0.96222 0.89957 0.92383 1.22201 0.99776 1.01212 0.99669 1.19231 0.78745 0.92462 0.97607 1.21549 0.90800 1.00040 1.45607 0.91713 1.24949 0.98879 0.94941 0.94965 1.69938 1.22572 1.15427 1.44292 0.86615 0.83024 0.80725 0.78128 1.19581 1.20916 1.20820 1.21996 1.00969 0.95499 0.99052 0.92100 0.92113 0.92500 0.90717 0.90448 0.85144 0.82861 0.88551 0.87550 0.76242 0.90063 0.92030 0.92672 0.92144 0.92432 0.94659 0.92687 0.92561 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.09 -0.73 6.11 -27.88 -0.17 -0.90 16 3 C -0.04 -0.48 5.17 -104.32 -0.54 -1.02 16 4 C -0.18 -1.87 9.82 -39.44 -0.39 -2.26 16 5 C 0.10 1.23 11.18 -17.55 -0.20 1.03 16 6 N -0.47 -7.53 10.27 -9.48 -0.10 -7.62 16 7 C 0.13 2.08 6.18 -82.58 -0.51 1.57 16 8 C 0.17 2.97 6.47 -5.19 -0.03 2.93 16 9 N -1.12 -19.18 6.04 -11.65 -0.07 -19.25 16 10 S 2.79 55.87 6.11 -107.50 -0.66 55.21 16 11 O -1.00 -20.59 17.09 -57.17 -0.98 -21.56 16 12 O -0.98 -23.17 16.09 -57.17 -0.92 -24.09 16 13 N -0.99 -19.95 2.84 -115.66 -0.33 -20.28 16 14 C 0.13 2.24 6.01 -4.04 -0.02 2.21 16 15 C -0.17 -2.67 10.24 37.16 0.38 -2.29 16 16 C 0.24 5.78 5.48 -5.19 -0.03 5.75 16 17 C -0.54 -13.25 7.94 -34.44 -0.27 -13.52 16 18 H 0.06 1.50 6.74 -52.49 -0.35 1.14 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.88 -24.53 13.29 55.43 0.74 -23.79 16 21 Si 0.89 19.73 29.54 -169.99 -5.02 14.70 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.15 -2.09 9.43 -39.44 -0.37 -2.46 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.10 1.94 7.72 -51.93 -0.40 1.54 16 34 H 0.11 1.96 5.48 -51.93 -0.28 1.67 16 35 H 0.41 5.95 8.65 -34.47 -0.30 5.66 16 36 H 0.08 1.36 8.05 -51.92 -0.42 0.95 16 37 H 0.06 0.94 7.64 -51.93 -0.40 0.54 16 38 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 1.47 6.83 -51.93 -0.35 1.11 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -31.69 378.74 -10.22 -41.91 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.71 Total: 7.29 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.88 Total: -8.22 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: 0.24 Total: -70.95 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -1.90 Total: -45.66 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 55.87 SS G_CDS: -0.66 Total: 55.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.69 -10.22 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337199952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.969 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds