Wall clock time and date at job start Tue Mar 31 2020 16:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47168 * 2 1 4 4 C 1.38671 * 120.79221 * 269.98397 * 3 2 1 5 5 C 1.38176 * 119.16439 * 180.02562 * 4 3 2 6 6 N 1.31880 * 120.76640 * 0.02562 * 5 4 3 7 7 C 1.31859 * 121.72659 * 359.67913 * 6 5 4 8 8 C 1.50698 * 119.62399 * 180.29293 * 7 6 5 9 9 N 1.46505 * 109.47017 * 275.29225 * 8 7 6 10 10 S 1.65596 * 119.99814 * 164.32905 * 9 8 7 11 11 O 1.42099 * 106.39867 * 179.13760 * 10 9 8 12 12 O 1.42101 * 106.40483 * 312.05027 * 10 9 8 13 13 N 1.65591 * 107.22034 * 65.59713 * 10 9 8 14 14 C 1.46496 * 120.00242 * 90.01466 * 13 10 9 15 15 C 1.52999 * 109.47359 * 94.06075 * 14 13 10 16 16 C 1.46503 * 119.99652 * 270.00880 * 13 10 9 17 17 C 1.50700 * 109.47132 * 100.93509 * 16 13 10 18 18 H 1.08001 * 119.99569 * 3.24803 * 17 16 13 19 19 C 1.37878 * 120.00451 * 183.25587 * 17 16 13 20 20 N 1.31509 * 119.99492 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00222 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46993 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47066 * 119.99700 * 21 19 17 24 24 H 1.48502 * 109.47331 * 239.99900 * 21 19 17 25 25 C 1.38231 * 120.76032 * 0.58508 * 7 6 5 26 26 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46959 * 299.99704 * 1 2 3 28 28 H 1.08999 * 109.47282 * 59.99574 * 1 2 3 29 29 H 1.09005 * 109.46871 * 240.00721 * 2 1 3 30 30 H 1.08999 * 109.47282 * 120.00426 * 2 1 3 31 31 H 1.08003 * 120.41490 * 0.04052 * 4 3 2 32 32 H 1.08000 * 119.61650 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46847 * 35.28489 * 8 7 6 34 34 H 1.08997 * 109.47601 * 155.28678 * 8 7 6 35 35 H 0.96996 * 119.99736 * 344.32511 * 9 8 7 36 36 H 1.09009 * 109.47088 * 214.06043 * 14 13 10 37 37 H 1.08998 * 109.47041 * 334.05773 * 14 13 10 38 38 H 1.08997 * 109.47303 * 305.05310 * 15 14 13 39 39 H 1.08999 * 109.47232 * 65.05361 * 15 14 13 40 40 H 1.09003 * 109.46829 * 185.05394 * 15 14 13 41 41 H 1.09000 * 109.47203 * 220.92943 * 16 13 10 42 42 H 1.08997 * 109.47689 * 340.93509 * 16 13 10 43 43 H 0.97000 * 119.99690 * 180.02562 * 20 19 17 44 44 H 1.07993 * 120.41811 * 179.72709 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2693 2.0900 -1.1912 5 6 2.7302 3.3921 -1.1520 6 7 2.9449 3.9972 -0.0001 7 6 2.7252 3.3940 1.1517 8 6 2.9805 4.1328 2.4401 9 7 4.3962 4.0152 2.7982 10 16 5.0501 5.0284 3.9332 11 8 6.4138 4.6527 4.0682 12 8 4.6369 6.3424 3.5838 13 7 4.3233 4.6786 5.3793 14 6 4.9039 3.6665 6.2651 15 6 5.8212 4.3461 7.2838 16 6 3.0996 5.3814 5.7730 17 6 1.9071 4.4970 5.5146 18 1 2.0501 3.4912 5.1482 19 6 0.6335 4.9718 5.7458 20 7 0.4594 6.1965 6.1924 21 14 -0.8447 3.8757 5.4248 22 1 -0.3826 2.5543 4.9291 23 1 -1.6082 3.6928 6.6852 24 1 -1.7182 4.5089 4.4044 25 6 2.2691 2.0897 1.1909 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0955 1.5997 -2.1377 32 1 2.9176 3.9200 -2.0753 33 1 2.7241 5.1846 2.3128 34 1 2.3683 3.7030 3.2329 35 1 4.9505 3.3439 2.3704 36 1 4.1054 3.1410 6.7890 37 1 5.4809 2.9549 5.6746 38 1 6.5661 4.9447 6.7595 39 1 5.2287 4.9906 7.9331 40 1 6.3223 3.5871 7.8846 41 1 3.1468 5.6267 6.8340 42 1 3.0043 6.2986 5.1919 43 1 -0.4366 6.5305 6.3554 44 1 2.0952 1.5995 2.1374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337199952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:37 Heat of formation + Delta-G solvation = -79.103675 kcal Electronic energy + Delta-G solvation = -26694.593113 eV Core-core repulsion = 22965.232146 eV Total energy + Delta-G solvation = -3729.360967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32653 -38.35183 -37.69010 -36.91007 -36.70189 -35.57567 -34.65383 -32.16289 -31.50391 -31.23375 -28.50801 -27.25405 -25.25088 -24.92612 -23.80332 -23.27170 -21.65136 -20.41214 -18.79417 -18.59162 -18.34676 -17.64842 -17.52046 -17.06543 -16.68420 -16.33632 -15.87474 -15.45796 -15.15148 -14.86466 -14.78884 -14.60682 -14.40848 -14.35199 -13.88989 -13.74662 -13.62876 -13.40395 -13.34001 -13.17954 -13.12295 -13.04485 -12.74355 -12.64587 -12.55199 -12.33214 -12.25935 -12.05973 -11.78645 -11.68562 -11.56387 -10.57044 -10.52597 -10.45536 -10.37706 -10.05086 -9.76033 -8.13770 -6.26701 -0.38486 0.15867 0.32208 1.43815 1.45934 1.55926 2.00670 2.44140 2.56861 2.85837 3.17714 3.24174 3.47018 3.63569 3.79466 3.99705 4.11635 4.17403 4.28351 4.37212 4.44652 4.46632 4.50598 4.52698 4.66671 4.75103 4.80377 4.85326 4.92763 5.00886 5.01617 5.06515 5.17097 5.18862 5.31255 5.37059 5.43476 5.44817 5.55268 5.78714 5.80222 5.88912 6.13920 6.14504 6.85465 7.06665 7.42838 8.94928 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009705 B = 0.005279 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.443549 B = 5302.931427 C = 6989.068217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.042 4.042 4 C -0.161 4.161 5 C 0.089 3.911 6 N -0.511 5.511 7 C 0.106 3.894 8 C 0.173 3.827 9 N -1.107 6.107 10 S 2.801 3.199 11 O -1.002 7.002 12 O -1.018 7.018 13 N -0.993 5.993 14 C 0.121 3.879 15 C -0.168 4.168 16 C 0.257 3.743 17 C -0.534 4.534 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.929 5.929 21 Si 0.950 3.050 22 H -0.248 1.248 23 H -0.283 1.283 24 H -0.288 1.288 25 C -0.160 4.160 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.179 0.821 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.419 0.581 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.264 0.736 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -15.775 -11.829 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.050 4.050 4 C -0.181 4.181 5 C -0.069 4.069 6 N -0.222 5.222 7 C -0.032 4.032 8 C 0.047 3.953 9 N -0.868 5.868 10 S 2.809 3.191 11 O -0.986 6.986 12 O -1.002 7.002 13 N -0.834 5.834 14 C -0.004 4.004 15 C -0.227 4.227 16 C 0.133 3.867 17 C -0.573 4.573 18 H 0.099 0.901 19 C -0.187 4.187 20 N -0.568 5.568 21 Si 0.775 3.225 22 H -0.171 1.171 23 H -0.209 1.209 24 H -0.214 1.214 25 C -0.181 4.181 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.186 0.814 32 H 0.196 0.804 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.254 0.746 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.291 -13.970 -11.804 18.583 hybrid contribution -1.280 -0.893 0.101 1.564 sum 2.011 -14.863 -11.703 19.024 Atomic orbital electron populations 1.21756 0.94064 1.02901 1.01835 1.20647 0.96498 0.90037 1.04738 1.20702 0.94218 0.97753 0.92312 1.22403 1.00135 0.95678 0.99839 1.23269 0.94589 0.93164 0.95833 1.67462 1.16195 1.39435 0.99063 1.21074 0.96855 0.92397 0.92874 1.20143 0.81492 1.00357 0.93354 1.55558 1.18778 1.54341 1.58169 1.01116 0.72084 0.73028 0.72911 1.93528 1.33661 1.84507 1.86947 1.93531 1.83821 1.39246 1.83607 1.57615 1.39267 1.52338 1.34223 1.21274 0.96802 0.89675 0.92642 1.22199 0.99235 1.01838 0.99442 1.18793 0.80430 0.91660 0.95829 1.21826 0.90760 1.00478 1.44213 0.90112 1.25783 1.01917 0.96068 0.94919 1.70081 1.23093 1.17491 1.46170 0.85622 0.79329 0.79904 0.77652 1.17076 1.20948 1.21407 1.22075 1.00918 0.94620 1.00486 0.90401 0.93898 0.92291 0.88330 0.89942 0.81363 0.80366 0.91960 0.88299 0.74622 0.89557 0.89622 0.93804 0.93240 0.88998 0.96336 0.96297 0.92721 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.89 71.98 0.71 -1.28 16 2 C -0.08 -1.09 6.11 29.85 0.18 -0.90 16 3 C -0.04 -0.82 5.17 -19.67 -0.10 -0.92 16 4 C -0.16 -2.85 9.82 22.36 0.22 -2.63 16 5 C 0.09 2.01 11.18 84.67 0.95 2.96 16 6 N -0.51 -16.14 10.27 -183.89 -1.89 -18.03 16 7 C 0.11 3.35 6.18 42.55 0.26 3.61 16 8 C 0.17 6.37 6.47 85.63 0.55 6.92 16 9 N -1.11 -38.24 6.04 -190.78 -1.15 -39.40 16 10 S 2.80 114.75 6.11 -56.49 -0.34 114.41 16 11 O -1.00 -40.96 17.09 -128.00 -2.19 -43.15 16 12 O -1.02 -50.84 16.09 -128.00 -2.06 -52.90 16 13 N -0.99 -40.58 2.84 -519.84 -1.48 -42.06 16 14 C 0.12 4.01 6.01 86.38 0.52 4.53 16 15 C -0.17 -5.14 10.24 71.98 0.74 -4.41 16 16 C 0.26 12.76 5.48 85.63 0.47 13.23 16 17 C -0.53 -26.50 7.94 25.60 0.20 -26.29 16 18 H 0.08 3.68 6.74 -2.91 -0.02 3.66 16 19 C 0.01 0.66 5.46 84.66 0.46 1.13 16 20 N -0.93 -53.27 13.29 21.45 0.28 -52.99 16 21 Si 0.95 40.47 29.54 68.60 2.03 42.50 16 22 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 25 C -0.16 -4.08 9.43 22.36 0.21 -3.87 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 0.88 8.10 -2.38 -0.02 0.86 16 30 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 31 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.18 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.06 2.68 7.72 -2.38 -0.02 2.66 16 34 H 0.10 3.71 5.48 -2.39 -0.01 3.70 16 35 H 0.42 12.11 8.65 -96.75 -0.84 11.27 16 36 H 0.09 2.78 8.05 -2.38 -0.02 2.76 16 37 H 0.09 2.42 7.64 -2.39 -0.02 2.41 16 38 H 0.04 1.42 8.11 -2.39 -0.02 1.41 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.02 1.08 6.83 -2.39 -0.02 1.06 16 43 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 44 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -70.95 378.74 -1.26 -72.21 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.16 Total: 27.34 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.38 Total: -7.92 kcal Atomic # 7 Polarization: -148.24 SS G_CDS: -4.24 Total: -152.48 kcal Atomic # 8 Polarization: -91.80 SS G_CDS: -4.25 Total: -96.05 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 16 Polarization: 114.75 SS G_CDS: -0.34 Total: 114.41 kcal Total: -70.95 -1.26 -72.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337199952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.895 kcal (2) G-P(sol) polarization free energy of solvation -70.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds