Wall clock time and date at job start Tue Mar 31 2020 16:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46993 * 2 1 4 4 C 1.38674 * 120.78849 * 269.97663 * 3 2 1 5 5 C 1.38184 * 119.16320 * 180.02562 * 4 3 2 6 6 N 1.31886 * 120.76232 * 359.75022 * 5 4 3 7 7 C 1.31856 * 121.72681 * 0.51713 * 6 5 4 8 8 C 1.50694 * 119.61568 * 179.75395 * 7 6 5 9 9 N 1.46496 * 109.47433 * 274.72794 * 8 7 6 10 10 S 1.65599 * 120.00176 * 164.99923 * 9 8 7 11 11 O 1.42096 * 106.40271 * 311.46484 * 10 9 8 12 12 O 1.42104 * 106.40293 * 178.54053 * 10 9 8 13 13 N 1.65603 * 107.21785 * 65.00401 * 10 9 8 14 14 C 1.46500 * 120.00003 * 270.00182 * 13 10 9 15 15 C 1.46496 * 120.00062 * 89.99674 * 13 10 9 16 16 H 1.09001 * 109.47464 * 0.02562 * 15 13 10 17 17 C 1.53006 * 109.46995 * 120.00453 * 15 13 10 18 18 C 1.50699 * 109.47248 * 240.00138 * 15 13 10 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99908 * 180.02562 * 18 15 13 21 21 N 1.31510 * 120.00364 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99946 * 180.02562 * 20 18 15 23 23 H 1.48505 * 109.46997 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47438 * 119.99776 * 22 20 18 25 25 H 1.48494 * 109.47197 * 239.99736 * 22 20 18 26 26 C 1.38227 * 120.76020 * 359.48495 * 7 6 5 27 27 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46538 * 299.99858 * 1 2 3 29 29 H 1.08994 * 109.47356 * 59.99737 * 1 2 3 30 30 H 1.08996 * 109.46825 * 240.00102 * 2 1 3 31 31 H 1.09000 * 109.47377 * 119.99815 * 2 1 3 32 32 H 1.08004 * 120.41620 * 0.04773 * 4 3 2 33 33 H 1.07996 * 119.61417 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.46964 * 154.72657 * 8 7 6 35 35 H 1.09004 * 109.47039 * 34.73151 * 8 7 6 36 36 H 0.97005 * 120.00284 * 345.00455 * 9 8 7 37 37 H 1.08998 * 109.46877 * 269.99776 * 14 13 10 38 38 H 1.09004 * 109.46845 * 29.99796 * 14 13 10 39 39 H 1.08994 * 109.47249 * 150.00027 * 14 13 10 40 40 H 1.09001 * 109.47002 * 299.99701 * 17 15 13 41 41 H 1.08993 * 109.46955 * 60.00138 * 17 15 13 42 42 H 1.09000 * 109.47050 * 179.97438 * 17 15 13 43 43 H 0.96999 * 120.00396 * 180.02562 * 21 20 18 44 44 H 1.08006 * 120.41685 * 180.27674 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2694 2.0899 -1.1913 5 6 2.7303 3.3921 -1.1521 6 7 2.9397 3.9991 -0.0002 7 6 2.7300 3.3924 1.1516 8 6 2.9903 4.1295 2.4399 9 7 4.4060 4.0063 2.7957 10 16 5.0617 5.0053 3.9421 11 8 4.6613 6.3252 3.6005 12 8 6.4216 4.6173 4.0821 13 7 4.3238 4.6505 5.3815 14 6 3.1038 5.3604 5.7738 15 6 4.8908 3.6266 6.2625 16 1 5.7902 3.2125 5.8067 17 6 5.2462 4.2547 7.6117 18 6 3.8809 2.5275 6.4706 19 1 2.9136 2.5857 5.9939 20 6 4.1920 1.4478 7.2696 21 7 5.3700 1.3766 7.8498 22 14 2.9404 0.0851 7.5270 23 1 1.7023 0.4007 6.7701 24 1 3.5026 -1.2014 7.0429 25 1 2.6211 -0.0272 8.9728 26 6 2.2690 2.0898 1.1908 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0956 1.5996 -2.1378 33 1 2.9177 3.9198 -2.0755 34 1 2.3777 3.7017 3.2334 35 1 2.7377 5.1823 2.3135 36 1 4.9595 3.3395 2.3597 37 1 3.3691 6.2537 6.3391 38 1 2.5474 5.6470 4.8813 39 1 2.4872 4.7086 6.3927 40 1 5.9767 5.0496 7.4613 41 1 4.3471 4.6689 8.0677 42 1 5.6677 3.4928 8.2674 43 1 5.5890 0.6168 8.4116 44 1 2.0950 1.5996 2.1373 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337829198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:46 Heat of formation + Delta-G solvation = -51.020950 kcal Electronic energy + Delta-G solvation = -26490.676105 eV Core-core repulsion = 22762.532897 eV Total energy + Delta-G solvation = -3728.143209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.46908 -36.67020 -36.15790 -35.68084 -35.21296 -34.65751 -32.61538 -31.18055 -30.51926 -29.08509 -26.24785 -25.47357 -25.19610 -24.52831 -22.97060 -20.90138 -20.71741 -18.85952 -17.28830 -16.96092 -16.77617 -16.43350 -16.34969 -15.86571 -15.36764 -14.95625 -14.40609 -14.27168 -14.14725 -13.69899 -13.49814 -13.32768 -13.19437 -12.92824 -12.69729 -12.62770 -12.07334 -11.96471 -11.77968 -11.72941 -11.50521 -11.44936 -11.35880 -11.22210 -11.12526 -10.97907 -10.89144 -10.42179 -10.22452 -10.09739 -9.66579 -9.51366 -9.38083 -9.20318 -9.11421 -8.50836 -7.96675 -6.11598 -4.20076 0.87177 1.12962 1.35872 3.20271 3.28710 3.30173 3.43601 3.78087 4.10089 4.23299 4.32359 4.35162 4.50002 4.89183 4.91532 4.98754 5.05163 5.07947 5.17779 5.19082 5.32563 5.48541 5.56064 5.59592 5.63793 5.69416 5.73663 5.89792 5.99354 6.04542 6.17750 6.20355 6.35216 6.58457 6.66312 6.88044 6.88425 7.11593 7.22527 7.52711 7.61639 7.77545 7.91214 8.04120 8.24508 8.82872 9.46025 10.93478 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.004822 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.103965 B = 5805.905482 C = 7919.003617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.040 4.040 4 C -0.172 4.172 5 C 0.099 3.901 6 N -0.473 5.473 7 C 0.125 3.875 8 C 0.175 3.825 9 N -1.121 6.121 10 S 2.784 3.216 11 O -0.995 6.995 12 O -0.980 6.980 13 N -0.990 5.990 14 C 0.105 3.895 15 C 0.267 3.733 16 H 0.059 0.941 17 C -0.145 4.145 18 C -0.524 4.524 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.895 3.105 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.151 4.151 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.413 0.587 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.012 0.988 41 H 0.032 0.968 42 H 0.092 0.908 43 H 0.263 0.737 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.250 -1.013 -14.613 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.048 4.048 4 C -0.193 4.193 5 C -0.058 4.058 6 N -0.183 5.183 7 C -0.014 4.014 8 C 0.047 3.953 9 N -0.879 5.879 10 S 2.793 3.207 11 O -0.978 6.978 12 O -0.964 6.964 13 N -0.833 5.833 14 C -0.042 4.042 15 C 0.164 3.836 16 H 0.077 0.923 17 C -0.204 4.204 18 C -0.563 4.563 19 H 0.081 0.919 20 C -0.139 4.139 21 N -0.524 5.524 22 Si 0.723 3.277 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.172 4.172 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.245 0.755 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.031 0.969 41 H 0.051 0.949 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.288 0.560 -14.530 16.737 hybrid contribution -1.027 -2.343 0.018 2.559 sum -9.315 -1.784 -14.512 17.336 Atomic orbital electron populations 1.21737 0.94187 1.02103 1.02364 1.20605 0.96552 0.91803 1.03612 1.20344 0.95101 0.96450 0.92904 1.22042 1.02118 0.96509 0.98588 1.22741 0.94932 0.92092 0.96052 1.67518 1.14585 1.38174 0.98023 1.21188 0.95009 0.91622 0.93538 1.20010 0.82654 1.00878 0.91718 1.55999 1.17928 1.55468 1.58503 1.01785 0.73204 0.73145 0.72583 1.93545 1.84048 1.36496 1.83757 1.93595 1.32939 1.83798 1.86074 1.57731 1.38543 1.51834 1.35183 1.21223 0.86890 0.96132 0.99961 1.18735 0.94218 0.83626 0.87000 0.92341 1.22053 0.98506 0.99501 1.00384 1.21400 1.01017 1.04184 1.29748 0.91857 1.24928 0.95375 0.98087 0.95486 1.69889 1.20352 1.30500 1.31662 0.86500 0.81325 0.81870 0.77983 1.19821 1.21063 1.21001 1.22024 1.00515 0.95320 0.99317 0.92020 0.92223 0.92577 0.90589 0.90159 0.84998 0.82750 0.89832 0.89064 0.75457 0.93782 0.93221 0.90147 0.96860 0.94861 0.88945 0.92700 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.71 16 2 C -0.09 -0.72 6.11 -27.88 -0.17 -0.89 16 3 C -0.04 -0.41 5.17 -104.32 -0.54 -0.95 16 4 C -0.17 -1.63 9.82 -39.44 -0.39 -2.02 16 5 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 6 N -0.47 -6.59 10.27 -9.48 -0.10 -6.69 16 7 C 0.13 1.71 6.18 -82.59 -0.51 1.20 16 8 C 0.17 2.53 6.55 -5.20 -0.03 2.50 16 9 N -1.12 -18.53 6.05 -11.66 -0.07 -18.60 16 10 S 2.78 55.31 6.10 -107.50 -0.66 54.65 16 11 O -1.00 -20.83 16.68 -57.17 -0.95 -21.79 16 12 O -0.98 -22.70 16.70 -57.17 -0.95 -23.65 16 13 N -0.99 -20.19 3.12 -115.85 -0.36 -20.55 16 14 C 0.10 1.81 9.28 59.85 0.56 2.37 16 15 C 0.27 6.42 2.62 -69.08 -0.18 6.24 16 16 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 17 C -0.14 -3.42 8.97 37.16 0.33 -3.09 16 18 C -0.52 -13.01 7.99 -34.44 -0.28 -13.28 16 19 H 0.06 1.51 7.33 -52.49 -0.38 1.12 16 20 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 21 N -0.89 -23.98 11.32 55.43 0.63 -23.35 16 22 Si 0.90 19.80 29.54 -169.99 -5.02 14.77 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.15 -1.83 9.43 -39.44 -0.37 -2.20 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 33 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 35 H 0.09 1.33 7.75 -51.93 -0.40 0.93 16 36 H 0.41 6.43 8.65 -34.47 -0.30 6.14 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 39 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 40 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 42 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 43 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 44 H 0.14 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 376.23 15.07 5.67 5.67 Total: -1.00 -31.97 376.23 -10.02 -42.00 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.70 Total: 5.94 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.50 Total: -8.41 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: 0.10 Total: -69.19 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -1.91 Total: -45.44 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 55.31 SS G_CDS: -0.66 Total: 54.65 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.97 -10.02 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337829198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.024 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds