Wall clock time and date at job start Tue Mar 31 2020 16:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.46993 * 2 1 4 4 C 1.38674 * 120.78849 * 269.97663 * 3 2 1 5 5 C 1.38184 * 119.16320 * 180.02562 * 4 3 2 6 6 N 1.31886 * 120.76232 * 359.75022 * 5 4 3 7 7 C 1.31856 * 121.72681 * 0.51713 * 6 5 4 8 8 C 1.50694 * 119.61568 * 179.75395 * 7 6 5 9 9 N 1.46496 * 109.47433 * 274.72794 * 8 7 6 10 10 S 1.65599 * 120.00176 * 164.99923 * 9 8 7 11 11 O 1.42096 * 106.40271 * 311.46484 * 10 9 8 12 12 O 1.42104 * 106.40293 * 178.54053 * 10 9 8 13 13 N 1.65603 * 107.21785 * 65.00401 * 10 9 8 14 14 C 1.46500 * 120.00003 * 270.00182 * 13 10 9 15 15 C 1.46496 * 120.00062 * 89.99674 * 13 10 9 16 16 H 1.09001 * 109.47464 * 0.02562 * 15 13 10 17 17 C 1.53006 * 109.46995 * 120.00453 * 15 13 10 18 18 C 1.50699 * 109.47248 * 240.00138 * 15 13 10 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99908 * 180.02562 * 18 15 13 21 21 N 1.31510 * 120.00364 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99946 * 180.02562 * 20 18 15 23 23 H 1.48505 * 109.46997 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47438 * 119.99776 * 22 20 18 25 25 H 1.48494 * 109.47197 * 239.99736 * 22 20 18 26 26 C 1.38227 * 120.76020 * 359.48495 * 7 6 5 27 27 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46538 * 299.99858 * 1 2 3 29 29 H 1.08994 * 109.47356 * 59.99737 * 1 2 3 30 30 H 1.08996 * 109.46825 * 240.00102 * 2 1 3 31 31 H 1.09000 * 109.47377 * 119.99815 * 2 1 3 32 32 H 1.08004 * 120.41620 * 0.04773 * 4 3 2 33 33 H 1.07996 * 119.61417 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.46964 * 154.72657 * 8 7 6 35 35 H 1.09004 * 109.47039 * 34.73151 * 8 7 6 36 36 H 0.97005 * 120.00284 * 345.00455 * 9 8 7 37 37 H 1.08998 * 109.46877 * 269.99776 * 14 13 10 38 38 H 1.09004 * 109.46845 * 29.99796 * 14 13 10 39 39 H 1.08994 * 109.47249 * 150.00027 * 14 13 10 40 40 H 1.09001 * 109.47002 * 299.99701 * 17 15 13 41 41 H 1.08993 * 109.46955 * 60.00138 * 17 15 13 42 42 H 1.09000 * 109.47050 * 179.97438 * 17 15 13 43 43 H 0.96999 * 120.00396 * 180.02562 * 21 20 18 44 44 H 1.08006 * 120.41685 * 180.27674 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2694 2.0899 -1.1913 5 6 2.7303 3.3921 -1.1521 6 7 2.9397 3.9991 -0.0002 7 6 2.7300 3.3924 1.1516 8 6 2.9903 4.1295 2.4399 9 7 4.4060 4.0063 2.7957 10 16 5.0617 5.0053 3.9421 11 8 4.6613 6.3252 3.6005 12 8 6.4216 4.6173 4.0821 13 7 4.3238 4.6505 5.3815 14 6 3.1038 5.3604 5.7738 15 6 4.8908 3.6266 6.2625 16 1 5.7902 3.2125 5.8067 17 6 5.2462 4.2547 7.6117 18 6 3.8809 2.5275 6.4706 19 1 2.9136 2.5857 5.9939 20 6 4.1920 1.4478 7.2696 21 7 5.3700 1.3766 7.8498 22 14 2.9404 0.0851 7.5270 23 1 1.7023 0.4007 6.7701 24 1 3.5026 -1.2014 7.0429 25 1 2.6211 -0.0272 8.9728 26 6 2.2690 2.0898 1.1908 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0956 1.5996 -2.1378 33 1 2.9177 3.9198 -2.0755 34 1 2.3777 3.7017 3.2334 35 1 2.7377 5.1823 2.3135 36 1 4.9595 3.3395 2.3597 37 1 3.3691 6.2537 6.3391 38 1 2.5474 5.6470 4.8813 39 1 2.4872 4.7086 6.3927 40 1 5.9767 5.0496 7.4613 41 1 4.3471 4.6689 8.0677 42 1 5.6677 3.4928 8.2674 43 1 5.5890 0.6168 8.4116 44 1 2.0950 1.5996 2.1373 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337829198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:45 Heat of formation + Delta-G solvation = -73.173361 kcal Electronic energy + Delta-G solvation = -26491.636706 eV Core-core repulsion = 22762.532897 eV Total energy + Delta-G solvation = -3729.103809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.33403 -38.36084 -37.88543 -36.92068 -36.72405 -35.57995 -34.48441 -32.16824 -31.24265 -30.90952 -27.37392 -27.19220 -26.93531 -25.25900 -23.81106 -22.61764 -21.67417 -20.40188 -18.83133 -18.47211 -18.24826 -17.72579 -17.54796 -17.04448 -16.74778 -16.24349 -15.82797 -15.23214 -15.09693 -14.96853 -14.78159 -14.49360 -14.43304 -14.36635 -13.90584 -13.70833 -13.47337 -13.38577 -13.21868 -13.16316 -13.12107 -12.96735 -12.74151 -12.65860 -12.55074 -12.33829 -12.15129 -12.11247 -11.87928 -11.79393 -11.17073 -10.56617 -10.48666 -10.47314 -10.38815 -10.05468 -9.65023 -8.06166 -6.20871 -0.39118 0.15253 0.30815 1.46497 1.49442 1.59205 2.01025 2.47802 2.58051 2.85355 3.19235 3.22771 3.45077 3.61209 3.78038 4.04858 4.11412 4.16673 4.25121 4.35739 4.45304 4.48100 4.62248 4.71490 4.75795 4.80002 4.82505 4.85283 4.99382 5.00935 5.05260 5.06460 5.15809 5.17546 5.28851 5.35993 5.44525 5.63227 5.68231 5.77335 5.85792 6.00091 6.14587 6.31419 6.88734 7.03362 7.48727 8.98825 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.004822 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.103965 B = 5805.905482 C = 7919.003617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.043 4.043 4 C -0.161 4.161 5 C 0.090 3.910 6 N -0.505 5.505 7 C 0.106 3.894 8 C 0.171 3.829 9 N -1.113 6.113 10 S 2.801 3.199 11 O -1.005 7.005 12 O -1.018 7.018 13 N -0.994 5.994 14 C 0.097 3.903 15 C 0.272 3.728 16 H 0.024 0.976 17 C -0.139 4.139 18 C -0.525 4.525 19 H 0.074 0.926 20 C 0.015 3.985 21 N -0.920 5.920 22 Si 0.959 3.041 23 H -0.258 1.258 24 H -0.287 1.287 25 H -0.286 1.286 26 C -0.161 4.161 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.181 0.819 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.417 0.583 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.017 0.983 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.262 0.738 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.443 -1.973 -16.357 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.051 4.051 4 C -0.181 4.181 5 C -0.067 4.067 6 N -0.216 5.216 7 C -0.032 4.032 8 C 0.045 3.955 9 N -0.874 5.874 10 S 2.810 3.190 11 O -0.989 6.989 12 O -1.002 7.002 13 N -0.836 5.836 14 C -0.049 4.049 15 C 0.168 3.832 16 H 0.042 0.958 17 C -0.199 4.199 18 C -0.564 4.564 19 H 0.092 0.908 20 C -0.185 4.185 21 N -0.559 5.559 22 Si 0.785 3.215 23 H -0.182 1.182 24 H -0.213 1.213 25 H -0.212 1.212 26 C -0.182 4.182 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.184 0.816 33 H 0.198 0.802 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.251 0.749 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.503 -0.376 -16.278 19.376 hybrid contribution -0.364 -2.025 0.440 2.104 sum -10.868 -2.401 -15.838 19.358 Atomic orbital electron populations 1.21726 0.93517 1.02835 1.02106 1.20660 0.97018 0.90393 1.04328 1.20665 0.94384 0.97455 0.92571 1.22400 1.00147 0.95854 0.99690 1.23250 0.94469 0.92998 0.95993 1.67461 1.15823 1.39391 0.98911 1.21012 0.96809 0.92284 0.93115 1.20154 0.81135 1.01145 0.93084 1.55697 1.19174 1.55020 1.57497 1.01099 0.72289 0.72996 0.72636 1.93525 1.84042 1.37381 1.83920 1.93539 1.35627 1.84329 1.86693 1.57587 1.39516 1.51382 1.35106 1.21455 0.85887 0.96105 1.01444 1.18426 0.93149 0.84456 0.87207 0.95844 1.21949 0.99030 0.98907 1.00013 1.21657 1.01338 1.04204 1.29195 0.90761 1.25706 0.96956 1.00389 0.95427 1.70033 1.22195 1.31191 1.32521 0.85500 0.79562 0.78796 0.77681 1.18194 1.21343 1.21216 1.22097 1.00865 0.94921 1.00277 0.90818 0.93346 0.91982 0.88733 0.90627 0.81642 0.80249 0.88735 0.89389 0.74934 0.93008 0.90619 0.90004 0.96410 0.93581 0.91202 0.92871 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 71.98 0.71 -1.03 16 2 C -0.09 -1.18 6.11 29.85 0.18 -0.99 16 3 C -0.04 -0.78 5.17 -19.67 -0.10 -0.88 16 4 C -0.16 -2.57 9.82 22.36 0.22 -2.35 16 5 C 0.09 1.77 11.18 84.67 0.95 2.71 16 6 N -0.51 -13.57 10.27 -183.89 -1.89 -15.46 16 7 C 0.11 2.82 6.18 42.55 0.26 3.08 16 8 C 0.17 4.87 6.55 85.63 0.56 5.43 16 9 N -1.11 -36.82 6.05 -190.80 -1.15 -37.97 16 10 S 2.80 111.97 6.10 -56.49 -0.34 111.63 16 11 O -1.01 -41.74 16.68 -128.00 -2.14 -43.87 16 12 O -1.02 -48.43 16.70 -128.00 -2.14 -50.57 16 13 N -0.99 -40.29 3.12 -520.45 -1.62 -41.91 16 14 C 0.10 3.21 9.28 127.77 1.19 4.40 16 15 C 0.27 13.21 2.62 44.25 0.12 13.33 16 16 H 0.02 1.31 6.91 -2.39 -0.02 1.30 16 17 C -0.14 -6.67 8.97 71.98 0.65 -6.02 16 18 C -0.52 -25.83 7.99 25.60 0.20 -25.63 16 19 H 0.07 3.42 7.33 -2.91 -0.02 3.40 16 20 C 0.01 0.75 5.30 84.66 0.45 1.20 16 21 N -0.92 -50.58 11.32 21.45 0.24 -50.34 16 22 Si 0.96 40.14 29.54 68.60 2.03 42.17 16 23 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 26 C -0.16 -3.71 9.43 22.36 0.21 -3.49 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 31 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 33 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.09 2.43 8.04 -2.39 -0.02 2.41 16 35 H 0.09 2.53 7.75 -2.39 -0.02 2.51 16 36 H 0.42 13.16 8.65 -96.74 -0.84 12.32 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 2.11 7.79 -2.38 -0.02 2.09 16 39 H 0.08 2.70 7.02 -2.39 -0.02 2.69 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 2.02 7.67 -2.39 -0.02 2.00 16 42 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 43 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 44 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -68.66 376.23 -1.26 -69.91 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.16 Total: 26.68 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 5.60 Total: -10.25 kcal Atomic # 7 Polarization: -141.26 SS G_CDS: -4.42 Total: -145.68 kcal Atomic # 8 Polarization: -90.17 SS G_CDS: -4.27 Total: -94.45 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 111.97 SS G_CDS: -0.34 Total: 111.63 kcal Total: -68.66 -1.26 -69.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337829198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.262 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds